Wall clock time and date at job start Tue Mar 31 2020 06:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46813 * 2 1 4 4 H 1.09004 * 109.46873 * 56.44316 * 3 2 1 5 5 C 1.50697 * 109.47048 * 176.44122 * 3 2 1 6 6 H 1.07999 * 119.99623 * 119.72489 * 5 3 2 7 7 C 1.37875 * 120.00193 * 299.99984 * 5 3 2 8 8 N 1.31513 * 119.99842 * 359.72560 * 7 5 3 9 9 Si 1.86799 * 120.00061 * 179.72745 * 7 5 3 10 10 H 1.48496 * 109.47390 * 90.00093 * 9 7 5 11 11 H 1.48506 * 109.46988 * 209.99801 * 9 7 5 12 12 H 1.48503 * 109.47155 * 329.99691 * 9 7 5 13 13 N 1.46903 * 109.47016 * 296.44283 * 3 2 1 14 14 C 1.46894 * 110.99724 * 169.91365 * 13 3 2 15 15 C 1.46894 * 110.99753 * 293.86686 * 13 3 2 16 16 C 1.50704 * 109.46885 * 163.26046 * 15 13 3 17 17 O 1.20830 * 120.00189 * 0.02562 * 16 15 13 18 18 O 1.34231 * 120.00150 * 179.97438 * 16 15 13 19 19 C 1.45197 * 117.00332 * 180.02562 * 18 16 15 20 20 C 1.50697 * 109.47222 * 180.02562 * 19 18 16 21 21 C 1.38237 * 120.00097 * 269.72751 * 20 19 18 22 22 C 1.38233 * 119.99918 * 179.76856 * 21 20 19 23 23 C 1.38235 * 119.99874 * 0.50480 * 22 21 20 24 24 C 1.38236 * 120.00118 * 359.75293 * 23 22 21 25 25 C 1.38229 * 119.99971 * 359.97438 * 24 23 22 26 26 H 1.08997 * 109.47034 * 55.16807 * 1 2 3 27 27 H 1.09004 * 109.46667 * 175.16096 * 1 2 3 28 28 H 1.08993 * 109.47733 * 295.16085 * 1 2 3 29 29 H 1.09001 * 109.47669 * 240.00327 * 2 1 3 30 30 H 1.08999 * 109.47082 * 119.99629 * 2 1 3 31 31 H 0.97005 * 119.99861 * 180.02562 * 8 7 5 32 32 H 1.09005 * 109.47089 * 60.00207 * 14 13 3 33 33 H 1.09001 * 109.46922 * 179.97438 * 14 13 3 34 34 H 1.09001 * 109.47876 * 299.99760 * 14 13 3 35 35 H 1.08993 * 109.47618 * 283.26307 * 15 13 3 36 36 H 1.09002 * 109.47247 * 43.26794 * 15 13 3 37 37 H 1.08998 * 109.47152 * 300.00753 * 19 18 16 38 38 H 1.09002 * 109.46759 * 60.00180 * 19 18 16 39 39 H 1.07998 * 119.99825 * 0.02562 * 21 20 19 40 40 H 1.07996 * 119.99982 * 180.23626 * 22 21 20 41 41 H 1.08003 * 119.99902 * 179.72888 * 23 22 21 42 42 H 1.07996 * 120.00033 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.00360 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6254 1.9745 0.8564 5 6 3.5443 1.4436 0.0882 6 1 4.1311 1.8908 -0.7005 7 6 4.1717 0.8685 1.1729 8 7 3.4571 0.3240 2.1333 9 14 6.0367 0.8630 1.2785 10 1 6.4966 2.0898 1.9775 11 1 6.4862 -0.3345 2.0330 12 1 6.6099 0.8292 -0.0910 13 7 1.6216 2.1098 -1.2401 14 6 1.8822 3.5540 -1.1745 15 6 2.2785 1.5088 -2.4085 16 6 1.5448 1.9142 -3.6610 17 8 0.5746 2.6306 -3.5877 18 8 1.9697 1.4802 -4.8580 19 6 1.2150 1.9108 -6.0213 20 6 1.8347 1.3290 -7.2657 21 6 2.8187 2.0279 -7.9396 22 6 3.3904 1.4920 -9.0783 23 6 2.9708 0.2619 -9.5491 24 6 1.9830 -0.4347 -8.8782 25 6 1.4153 0.0987 -7.7363 26 1 -0.3633 0.5870 -0.8435 27 1 -0.3633 -1.0241 -0.0867 28 1 -0.3634 0.4369 0.9301 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8985 -0.0803 2.8967 32 1 2.9489 3.7244 -1.0286 33 1 1.5637 4.0232 -2.1054 34 1 1.3279 3.9859 -0.3413 35 1 3.3103 1.8555 -2.4636 36 1 2.2645 0.4229 -2.3147 37 1 0.1846 1.5665 -5.9337 38 1 1.2305 2.9990 -6.0819 39 1 3.1436 2.9908 -7.5740 40 1 4.1618 2.0363 -9.6027 41 1 3.4144 -0.1548 -10.4413 42 1 1.6549 -1.3955 -9.2462 43 1 0.6433 -0.4453 -7.2123 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255177013.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:35 Heat of formation + Delta-G solvation = -55.514320 kcal Electronic energy + Delta-G solvation = -23116.953171 eV Core-core repulsion = 19741.389929 eV Total energy + Delta-G solvation = -3375.563242 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.22187 -39.22535 -37.28435 -35.86574 -32.81052 -32.28851 -31.23850 -31.11783 -28.38799 -26.81021 -26.28869 -24.09558 -22.79744 -22.22682 -21.48984 -20.69482 -18.94067 -17.34803 -17.22444 -16.57445 -16.32648 -15.80606 -15.25525 -15.02013 -14.70035 -14.15459 -13.82185 -13.63356 -13.53431 -13.09316 -12.94694 -12.83941 -12.55665 -12.15517 -11.96295 -11.53394 -11.36161 -11.29299 -11.27493 -11.03906 -10.98076 -10.86345 -10.64423 -10.42393 -10.06464 -9.91979 -9.69997 -9.48451 -9.16259 -9.12900 -9.01365 -8.42332 -7.25551 -6.04971 -4.19349 1.00237 1.19562 2.71546 2.96830 3.24104 3.31870 3.34137 3.70874 4.35144 4.53214 4.61210 4.78449 4.90500 5.07589 5.11291 5.17343 5.22593 5.32139 5.44068 5.54041 5.74739 5.82523 5.92610 6.15049 6.17853 6.21525 6.28075 6.37967 6.40109 6.47456 6.52034 6.67081 6.67603 6.75600 6.80157 7.06083 7.16859 7.25765 7.51637 7.68311 7.85477 8.05455 8.14564 8.29398 8.38670 8.89210 9.48992 10.94622 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017595 B = 0.003591 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.987289 B = 7794.854011 C = 8418.765976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C 0.215 3.785 4 H 0.046 0.954 5 C -0.551 4.551 6 H 0.057 0.943 7 C 0.071 3.929 8 N -0.883 5.883 9 Si 0.888 3.112 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.524 5.524 14 C 0.033 3.967 15 C 0.072 3.928 16 C 0.458 3.542 17 O -0.497 6.497 18 O -0.359 6.359 19 C 0.107 3.893 20 C -0.091 4.091 21 C -0.096 4.096 22 C -0.124 4.124 23 C -0.114 4.114 24 C -0.124 4.124 25 C -0.095 4.095 26 H 0.051 0.949 27 H 0.026 0.974 28 H 0.039 0.961 29 H 0.032 0.968 30 H 0.095 0.905 31 H 0.262 0.738 32 H 0.028 0.972 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.115 0.885 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.004 0.204 -18.894 19.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.151 4.151 3 C 0.109 3.891 4 H 0.064 0.936 5 C -0.590 4.590 6 H 0.075 0.925 7 C -0.132 4.132 8 N -0.520 5.520 9 Si 0.716 3.284 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.248 5.248 14 C -0.115 4.115 15 C -0.057 4.057 16 C 0.300 3.700 17 O -0.383 6.383 18 O -0.277 6.277 19 C 0.033 3.967 20 C -0.091 4.091 21 C -0.114 4.114 22 C -0.142 4.142 23 C -0.132 4.132 24 C -0.142 4.142 25 C -0.114 4.114 26 H 0.070 0.930 27 H 0.045 0.955 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.113 0.887 31 H 0.073 0.927 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.133 0.867 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.817 0.267 -18.758 18.971 hybrid contribution 1.867 0.143 0.177 1.881 sum -0.950 0.411 -18.582 18.610 Atomic orbital electron populations 1.21740 0.98666 0.98651 1.00867 1.21644 0.92455 0.99003 1.01978 1.19375 0.93057 0.91244 0.85377 0.93591 1.21721 0.92474 1.38413 1.06353 0.92499 1.24897 0.98040 0.94799 0.95474 1.69872 1.35058 1.37641 1.09465 0.86658 0.85960 0.77604 0.78180 1.20693 1.21116 1.19928 1.62115 1.56874 1.02994 1.02856 1.22234 0.99197 0.89283 1.00828 1.21514 0.95736 1.02751 0.85693 1.24552 0.83453 0.77297 0.84664 1.90595 1.26354 1.34562 1.86809 1.86615 1.56162 1.69730 1.15162 1.21685 0.94716 0.99225 0.81047 1.19596 0.98250 0.95734 0.95560 1.21119 0.95097 1.00050 0.95174 1.21153 1.00163 0.96181 0.96744 1.21216 0.97109 0.95082 0.99817 1.21158 0.97197 1.00066 0.95784 1.21129 0.99688 0.94461 0.96077 0.93001 0.95511 0.94150 0.94940 0.88714 0.92748 0.95353 0.92996 0.92232 0.90594 0.86726 0.90514 0.90649 0.85777 0.85830 0.85989 0.85792 0.85682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.85 37.16 0.37 -2.54 16 2 C -0.11 -2.59 5.16 -26.73 -0.14 -2.73 16 3 C 0.21 5.16 1.72 -68.86 -0.12 5.05 16 4 H 0.05 1.23 8.06 -51.93 -0.42 0.81 16 5 C -0.55 -14.13 7.20 -34.44 -0.25 -14.38 16 6 H 0.06 1.45 6.00 -52.49 -0.31 1.13 16 7 C 0.07 1.87 5.29 -17.82 -0.09 1.77 16 8 N -0.88 -24.08 11.31 55.43 0.63 -23.45 16 9 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 13 N -0.52 -11.22 3.63 -237.73 -0.86 -12.09 16 14 C 0.03 0.67 9.04 60.06 0.54 1.21 16 15 C 0.07 1.41 4.65 -4.98 -0.02 1.39 16 16 C 0.46 8.34 7.67 36.01 0.28 8.61 16 17 O -0.50 -9.94 14.66 -18.75 -0.27 -10.22 16 18 O -0.36 -5.79 10.20 -39.26 -0.40 -6.19 16 19 C 0.11 1.41 5.59 36.00 0.20 1.61 16 20 C -0.09 -1.07 5.52 -104.62 -0.58 -1.65 16 21 C -0.10 -1.02 9.70 -39.58 -0.38 -1.41 16 22 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 23 C -0.11 -0.99 10.05 -39.58 -0.40 -1.39 16 24 C -0.12 -1.14 10.05 -39.59 -0.40 -1.54 16 25 C -0.10 -1.02 9.70 -39.58 -0.38 -1.40 16 26 H 0.05 1.07 7.57 -51.93 -0.39 0.67 16 27 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.03 0.72 6.15 -51.93 -0.32 0.40 16 30 H 0.09 2.43 5.99 -51.93 -0.31 2.12 16 31 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 32 H 0.03 0.58 7.15 -51.93 -0.37 0.21 16 33 H 0.05 0.99 6.45 -51.93 -0.33 0.66 16 34 H 0.06 1.17 8.12 -51.93 -0.42 0.75 16 35 H 0.08 1.49 6.75 -51.93 -0.35 1.14 16 36 H 0.12 2.25 5.88 -51.93 -0.31 1.94 16 37 H 0.08 0.97 8.08 -51.93 -0.42 0.55 16 38 H 0.08 0.94 8.08 -51.93 -0.42 0.52 16 39 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 42 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 43 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 351.04 15.07 5.29 5.29 Total: -1.00 -28.73 351.04 -8.89 -37.62 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -6.47 Total: 2.49 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -1.77 Total: -8.93 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: -0.24 Total: -35.53 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.68 Total: -16.41 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.73 -8.89 -37.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177013.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.892 kcal (2) G-P(sol) polarization free energy of solvation -28.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds