Wall clock time and date at job start Tue Mar 31 2020 06:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46813 * 2 1 4 4 H 1.09004 * 109.46873 * 56.44316 * 3 2 1 5 5 C 1.50697 * 109.47048 * 176.44122 * 3 2 1 6 6 H 1.07999 * 119.99623 * 119.72489 * 5 3 2 7 7 C 1.37875 * 120.00193 * 299.99984 * 5 3 2 8 8 N 1.31513 * 119.99842 * 359.72560 * 7 5 3 9 9 Si 1.86799 * 120.00061 * 179.72745 * 7 5 3 10 10 H 1.48496 * 109.47390 * 90.00093 * 9 7 5 11 11 H 1.48506 * 109.46988 * 209.99801 * 9 7 5 12 12 H 1.48503 * 109.47155 * 329.99691 * 9 7 5 13 13 N 1.46903 * 109.47016 * 296.44283 * 3 2 1 14 14 C 1.46894 * 110.99724 * 169.91365 * 13 3 2 15 15 C 1.46894 * 110.99753 * 293.86686 * 13 3 2 16 16 C 1.50704 * 109.46885 * 163.26046 * 15 13 3 17 17 O 1.20830 * 120.00189 * 0.02562 * 16 15 13 18 18 O 1.34231 * 120.00150 * 179.97438 * 16 15 13 19 19 C 1.45197 * 117.00332 * 180.02562 * 18 16 15 20 20 C 1.50697 * 109.47222 * 180.02562 * 19 18 16 21 21 C 1.38237 * 120.00097 * 269.72751 * 20 19 18 22 22 C 1.38233 * 119.99918 * 179.76856 * 21 20 19 23 23 C 1.38235 * 119.99874 * 0.50480 * 22 21 20 24 24 C 1.38236 * 120.00118 * 359.75293 * 23 22 21 25 25 C 1.38229 * 119.99971 * 359.97438 * 24 23 22 26 26 H 1.08997 * 109.47034 * 55.16807 * 1 2 3 27 27 H 1.09004 * 109.46667 * 175.16096 * 1 2 3 28 28 H 1.08993 * 109.47733 * 295.16085 * 1 2 3 29 29 H 1.09001 * 109.47669 * 240.00327 * 2 1 3 30 30 H 1.08999 * 109.47082 * 119.99629 * 2 1 3 31 31 H 0.97005 * 119.99861 * 180.02562 * 8 7 5 32 32 H 1.09005 * 109.47089 * 60.00207 * 14 13 3 33 33 H 1.09001 * 109.46922 * 179.97438 * 14 13 3 34 34 H 1.09001 * 109.47876 * 299.99760 * 14 13 3 35 35 H 1.08993 * 109.47618 * 283.26307 * 15 13 3 36 36 H 1.09002 * 109.47247 * 43.26794 * 15 13 3 37 37 H 1.08998 * 109.47152 * 300.00753 * 19 18 16 38 38 H 1.09002 * 109.46759 * 60.00180 * 19 18 16 39 39 H 1.07998 * 119.99825 * 0.02562 * 21 20 19 40 40 H 1.07996 * 119.99982 * 180.23626 * 22 21 20 41 41 H 1.08003 * 119.99902 * 179.72888 * 23 22 21 42 42 H 1.07996 * 120.00033 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.00360 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6254 1.9745 0.8564 5 6 3.5443 1.4436 0.0882 6 1 4.1311 1.8908 -0.7005 7 6 4.1717 0.8685 1.1729 8 7 3.4571 0.3240 2.1333 9 14 6.0367 0.8630 1.2785 10 1 6.4966 2.0898 1.9775 11 1 6.4862 -0.3345 2.0330 12 1 6.6099 0.8292 -0.0910 13 7 1.6216 2.1098 -1.2401 14 6 1.8822 3.5540 -1.1745 15 6 2.2785 1.5088 -2.4085 16 6 1.5448 1.9142 -3.6610 17 8 0.5746 2.6306 -3.5877 18 8 1.9697 1.4802 -4.8580 19 6 1.2150 1.9108 -6.0213 20 6 1.8347 1.3290 -7.2657 21 6 2.8187 2.0279 -7.9396 22 6 3.3904 1.4920 -9.0783 23 6 2.9708 0.2619 -9.5491 24 6 1.9830 -0.4347 -8.8782 25 6 1.4153 0.0987 -7.7363 26 1 -0.3633 0.5870 -0.8435 27 1 -0.3633 -1.0241 -0.0867 28 1 -0.3634 0.4369 0.9301 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8985 -0.0803 2.8967 32 1 2.9489 3.7244 -1.0286 33 1 1.5637 4.0232 -2.1054 34 1 1.3279 3.9859 -0.3413 35 1 3.3103 1.8555 -2.4636 36 1 2.2645 0.4229 -2.3147 37 1 0.1846 1.5665 -5.9337 38 1 1.2305 2.9990 -6.0819 39 1 3.1436 2.9908 -7.5740 40 1 4.1618 2.0363 -9.6027 41 1 3.4144 -0.1548 -10.4413 42 1 1.6549 -1.3955 -9.2462 43 1 0.6433 -0.4453 -7.2123 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255177013.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:34 Heat of formation + Delta-G solvation = -69.354922 kcal Electronic energy + Delta-G solvation = -23117.553345 eV Core-core repulsion = 19741.389929 eV Total energy + Delta-G solvation = -3376.163416 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.57037 -40.09048 -38.93240 -37.30125 -34.70508 -33.20132 -33.04334 -31.83542 -29.89402 -28.67962 -27.36058 -25.90116 -23.89719 -23.52353 -22.50904 -22.05888 -20.74619 -18.87256 -18.48765 -17.91847 -17.61886 -17.10065 -16.69333 -16.17580 -15.96121 -15.65706 -15.48060 -14.98544 -14.58519 -14.36225 -14.20518 -13.99864 -13.83788 -13.67238 -13.37598 -13.18042 -13.16707 -12.82578 -12.70407 -12.57126 -12.44736 -12.08480 -12.04352 -11.93883 -11.63314 -11.57417 -11.47320 -11.24228 -11.00376 -10.43108 -9.85886 -9.82407 -9.04138 -8.03469 -6.25686 0.20037 0.46692 1.25121 1.41047 1.44024 1.51792 1.73965 2.42489 2.88649 3.17317 3.44245 3.62728 3.80218 3.96400 4.13721 4.22185 4.26547 4.29112 4.36633 4.51308 4.53192 4.60134 4.70509 4.73493 4.74695 4.84878 4.92114 5.00386 5.07427 5.12090 5.20384 5.37040 5.42353 5.45800 5.52445 5.57706 5.59790 5.60498 5.77389 5.98235 6.05342 6.11815 6.33448 6.46151 6.87249 6.91499 7.45679 8.93205 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017595 B = 0.003591 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.987289 B = 7794.854011 C = 8418.765976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.107 4.107 3 C 0.222 3.778 4 H 0.013 0.987 5 C -0.557 4.557 6 H 0.056 0.944 7 C 0.026 3.974 8 N -0.909 5.909 9 Si 0.947 3.053 10 H -0.280 1.280 11 H -0.284 1.284 12 H -0.269 1.269 13 N -0.528 5.528 14 C 0.039 3.961 15 C 0.074 3.926 16 C 0.470 3.530 17 O -0.517 6.517 18 O -0.360 6.360 19 C 0.106 3.894 20 C -0.113 4.113 21 C -0.110 4.110 22 C -0.129 4.129 23 C -0.113 4.113 24 C -0.129 4.129 25 C -0.110 4.110 26 H 0.050 0.950 27 H 0.048 0.952 28 H 0.034 0.966 29 H 0.037 0.963 30 H 0.069 0.931 31 H 0.262 0.738 32 H 0.021 0.979 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.114 0.886 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.129 0.871 40 H 0.147 0.853 41 H 0.150 0.850 42 H 0.147 0.853 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.255 -0.275 -21.072 21.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.146 4.146 3 C 0.116 3.884 4 H 0.031 0.969 5 C -0.596 4.596 6 H 0.075 0.925 7 C -0.174 4.174 8 N -0.547 5.547 9 Si 0.773 3.227 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.193 1.193 13 N -0.252 5.252 14 C -0.110 4.110 15 C -0.055 4.055 16 C 0.313 3.687 17 O -0.405 6.405 18 O -0.277 6.277 19 C 0.033 3.967 20 C -0.113 4.113 21 C -0.128 4.128 22 C -0.147 4.147 23 C -0.131 4.131 24 C -0.146 4.146 25 C -0.128 4.128 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.040 0.960 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.131 0.869 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.147 0.853 40 H 0.164 0.836 41 H 0.168 0.832 42 H 0.165 0.835 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.065 -0.210 -20.964 21.066 hybrid contribution 1.631 0.288 0.733 1.811 sum -0.433 0.078 -20.231 20.236 Atomic orbital electron populations 1.21603 0.96650 1.00002 1.00487 1.21500 0.94209 0.98010 1.00862 1.19138 0.92184 0.91592 0.85496 0.96942 1.21957 0.93438 1.37972 1.06251 0.92550 1.25574 1.01847 0.94694 0.95318 1.69994 1.36488 1.38355 1.09899 0.85735 0.81363 0.77391 0.78219 1.20645 1.20975 1.19328 1.62040 1.57102 1.03505 1.02550 1.22197 0.98730 0.88673 1.01350 1.21434 0.95763 1.02531 0.85795 1.24055 0.82783 0.76833 0.85021 1.90586 1.27126 1.35509 1.87260 1.86584 1.56461 1.69377 1.15243 1.21900 0.94726 0.99669 0.80400 1.19592 0.99601 0.96766 0.95367 1.21316 0.95122 1.00461 0.95900 1.21482 1.00364 0.96590 0.96247 1.21620 0.96435 0.94687 1.00358 1.21485 0.97007 1.00987 0.95164 1.21324 1.00178 0.94311 0.96947 0.93082 0.93296 0.94699 0.94425 0.91309 0.92819 0.96008 0.91895 0.92335 0.90689 0.86868 0.90273 0.90251 0.85268 0.83571 0.83235 0.83546 0.85244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.25 9.85 71.98 0.71 -4.54 16 2 C -0.11 -4.98 5.16 30.60 0.16 -4.82 16 3 C 0.22 10.82 1.72 44.17 0.08 10.90 16 4 H 0.01 0.70 8.06 -2.38 -0.02 0.68 16 5 C -0.56 -28.74 7.20 25.60 0.18 -28.56 16 6 H 0.06 2.86 6.00 -2.91 -0.02 2.85 16 7 C 0.03 1.38 5.29 84.65 0.45 1.83 16 8 N -0.91 -50.19 11.31 21.45 0.24 -49.95 16 9 Si 0.95 41.96 29.54 68.60 2.03 43.99 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 13 N -0.53 -22.63 3.63 -906.04 -3.29 -25.92 16 14 C 0.04 1.57 9.04 127.69 1.15 2.72 16 15 C 0.07 2.86 4.65 85.56 0.40 3.25 16 16 C 0.47 16.82 7.67 71.24 0.55 17.37 16 17 O -0.52 -20.34 14.66 21.95 0.32 -20.02 16 18 O -0.36 -11.34 10.20 -51.43 -0.52 -11.86 16 19 C 0.11 2.72 5.59 71.24 0.40 3.12 16 20 C -0.11 -2.55 5.52 -19.87 -0.11 -2.66 16 21 C -0.11 -2.19 9.70 22.27 0.22 -1.97 16 22 C -0.13 -2.06 10.05 22.27 0.22 -1.84 16 23 C -0.11 -1.64 10.05 22.27 0.22 -1.42 16 24 C -0.13 -2.06 10.05 22.27 0.22 -1.84 16 25 C -0.11 -2.19 9.70 22.27 0.22 -1.98 16 26 H 0.05 2.06 7.57 -2.39 -0.02 2.04 16 27 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.04 1.67 6.15 -2.39 -0.01 1.65 16 30 H 0.07 3.58 5.99 -2.39 -0.01 3.56 16 31 H 0.26 13.88 8.31 -92.70 -0.77 13.11 16 32 H 0.02 0.89 7.15 -2.38 -0.02 0.87 16 33 H 0.06 2.38 6.45 -2.39 -0.02 2.37 16 34 H 0.06 2.33 8.12 -2.39 -0.02 2.31 16 35 H 0.08 2.92 6.75 -2.39 -0.02 2.90 16 36 H 0.11 4.39 5.88 -2.39 -0.01 4.38 16 37 H 0.08 1.97 8.08 -2.39 -0.02 1.95 16 38 H 0.08 1.94 8.08 -2.39 -0.02 1.93 16 39 H 0.13 2.31 8.06 -2.91 -0.02 2.29 16 40 H 0.15 1.60 8.06 -2.91 -0.02 1.57 16 41 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 42 H 0.15 1.61 8.06 -2.91 -0.02 1.58 16 43 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -60.55 351.04 4.83 -55.72 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 0.99 Total: 18.47 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: 5.06 Total: -10.43 kcal Atomic # 7 Polarization: -72.83 SS G_CDS: -3.05 Total: -75.88 kcal Atomic # 8 Polarization: -31.68 SS G_CDS: -0.20 Total: -31.88 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -60.55 4.83 -55.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177013.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.631 kcal (2) G-P(sol) polarization free energy of solvation -60.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds