Wall clock time and date at job start Tue Mar 31 2020 06:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46610 * 2 1 4 4 H 1.08996 * 109.46650 * 182.90948 * 3 2 1 5 5 C 1.50702 * 109.47143 * 62.90873 * 3 2 1 6 6 H 1.07999 * 119.99927 * 244.57334 * 5 3 2 7 7 C 1.37879 * 119.99761 * 64.57911 * 5 3 2 8 8 N 1.31510 * 120.00075 * 8.84632 * 7 5 3 9 9 Si 1.86802 * 119.99725 * 188.85039 * 7 5 3 10 10 H 1.48499 * 109.47251 * 179.97438 * 9 7 5 11 11 H 1.48502 * 109.46807 * 299.99467 * 9 7 5 12 12 H 1.48504 * 109.47231 * 59.99520 * 9 7 5 13 13 N 1.46903 * 109.47142 * 302.90943 * 3 2 1 14 14 C 1.46901 * 110.99932 * 173.12835 * 13 3 2 15 15 C 1.46904 * 110.99813 * 297.08219 * 13 3 2 16 16 C 1.50695 * 109.46887 * 163.58780 * 15 13 3 17 17 O 1.20824 * 120.00432 * 0.02562 * 16 15 13 18 18 O 1.34233 * 120.00014 * 179.97438 * 16 15 13 19 19 C 1.45204 * 117.00089 * 180.02562 * 18 16 15 20 20 C 1.50699 * 109.47046 * 180.02562 * 19 18 16 21 21 C 1.38231 * 120.00115 * 269.73353 * 20 19 18 22 22 C 1.38242 * 119.99823 * 179.76917 * 21 20 19 23 23 C 1.38237 * 119.99947 * 0.50167 * 22 21 20 24 24 C 1.38233 * 119.99838 * 359.74413 * 23 22 21 25 25 C 1.38235 * 120.00256 * 0.02562 * 24 23 22 26 26 H 1.09003 * 109.46612 * 184.07067 * 1 2 3 27 27 H 1.09000 * 109.47550 * 304.07117 * 1 2 3 28 28 H 1.09000 * 109.47456 * 64.07491 * 1 2 3 29 29 H 1.08993 * 109.47286 * 240.00276 * 2 1 3 30 30 H 1.08991 * 109.47230 * 119.99248 * 2 1 3 31 31 H 0.96998 * 120.00365 * 357.74915 * 8 7 5 32 32 H 1.08997 * 109.46811 * 60.00186 * 14 13 3 33 33 H 1.08994 * 109.46996 * 179.97438 * 14 13 3 34 34 H 1.08993 * 109.46909 * 299.99731 * 14 13 3 35 35 H 1.09003 * 109.46781 * 283.59108 * 15 13 3 36 36 H 1.09002 * 109.46929 * 43.58937 * 15 13 3 37 37 H 1.08998 * 109.47224 * 300.00704 * 19 18 16 38 38 H 1.08999 * 109.47001 * 60.00647 * 19 18 16 39 39 H 1.07999 * 120.00085 * 359.97438 * 21 20 19 40 40 H 1.08003 * 119.99728 * 180.22375 * 22 21 20 41 41 H 1.07993 * 120.00019 * 179.72912 * 23 22 21 42 42 H 1.07997 * 120.00098 * 179.97438 * 24 23 22 43 43 H 1.07997 * 120.00222 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1286 1.4431 -0.0522 5 6 1.5973 2.1319 1.2649 6 1 0.9132 2.9661 1.2143 7 6 2.0656 1.6975 2.4868 8 7 3.0268 0.8016 2.5419 9 14 1.3347 2.3814 4.0640 10 1 2.0060 1.7570 5.2322 11 1 1.5352 3.8523 4.1053 12 1 -0.1184 2.0784 4.1083 13 7 1.4936 2.1551 -1.1628 14 6 1.8283 3.5844 -1.1092 15 6 1.9616 1.5514 -2.4176 16 6 1.0941 2.0229 -3.5560 17 8 0.1801 2.7842 -3.3440 18 8 1.3374 1.5981 -4.8059 19 6 0.4619 2.0938 -5.8528 20 6 0.8842 1.5129 -7.1777 21 6 1.8077 2.1789 -7.9615 22 6 2.1986 1.6437 -9.1746 23 6 1.6583 0.4476 -9.6086 24 6 0.7309 -0.2158 -8.8271 25 6 0.3436 0.3170 -7.6118 26 1 -0.3633 -1.0251 0.0730 27 1 -0.3634 0.5757 0.8512 28 1 -0.3634 0.4493 -0.9242 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 3.3838 0.4223 1.7236 32 1 2.9117 3.7039 -1.1035 33 1 1.4122 4.0879 -1.9819 34 1 1.4096 4.0219 -0.2030 35 1 2.9944 1.8482 -2.6005 36 1 1.9036 0.4655 -2.3422 37 1 -0.5651 1.7985 -5.6377 38 1 0.5259 3.1811 -5.8955 39 1 2.2263 3.1158 -7.6246 40 1 2.9229 2.1622 -9.7854 41 1 1.9604 0.0316 -10.5584 42 1 0.3084 -1.1500 -9.1663 43 1 -0.3812 -0.2011 -7.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255177014.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:37 Heat of formation + Delta-G solvation = -54.207410 kcal Electronic energy + Delta-G solvation = -23032.902275 eV Core-core repulsion = 19657.395704 eV Total energy + Delta-G solvation = -3375.506570 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.36616 -39.32335 -37.47880 -36.04429 -33.23534 -32.38379 -31.19583 -31.03446 -28.68947 -26.50939 -26.04081 -24.20357 -22.87683 -22.61802 -21.59791 -20.77077 -19.15255 -17.58842 -17.27491 -16.55960 -16.50490 -16.00965 -15.37132 -15.13097 -14.78174 -14.21904 -13.81537 -13.71060 -13.67294 -13.30596 -13.15921 -12.93513 -12.60062 -12.19274 -12.11040 -11.75284 -11.48626 -11.37850 -11.32701 -11.11749 -10.87169 -10.77854 -10.53715 -10.22326 -10.21147 -10.09627 -9.83078 -9.69407 -9.20772 -9.12073 -8.51505 -8.36151 -7.37513 -6.36291 -4.06311 0.91543 1.11641 2.54621 2.81059 3.44218 3.47080 3.60806 3.64771 4.42833 4.50826 4.53089 4.70738 4.82901 4.87022 4.98925 5.05725 5.22878 5.35333 5.36091 5.38716 5.56671 5.66493 5.69453 5.74683 6.07239 6.13640 6.20550 6.25452 6.28955 6.29470 6.33793 6.49647 6.56199 6.68102 6.80956 6.86925 7.02019 7.12119 7.29499 7.48710 7.72919 7.92821 8.09474 8.32280 8.56160 8.84720 9.62280 11.00294 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.036209 B = 0.002926 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.106892 B = 9567.232631 C = 9773.144780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.117 4.117 3 C 0.206 3.794 4 H -0.007 1.007 5 C -0.581 4.581 6 H 0.060 0.940 7 C 0.022 3.978 8 N -0.911 5.911 9 Si 1.067 2.933 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.287 1.287 13 N -0.513 5.513 14 C 0.039 3.961 15 C 0.057 3.943 16 C 0.461 3.539 17 O -0.487 6.487 18 O -0.360 6.360 19 C 0.108 3.892 20 C -0.093 4.093 21 C -0.096 4.096 22 C -0.124 4.124 23 C -0.113 4.113 24 C -0.124 4.124 25 C -0.095 4.095 26 H 0.020 0.980 27 H 0.064 0.936 28 H 0.045 0.955 29 H 0.022 0.978 30 H 0.068 0.932 31 H 0.269 0.731 32 H 0.010 0.990 33 H 0.051 0.949 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.113 0.887 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.221 -0.464 -21.473 21.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.155 4.155 3 C 0.100 3.900 4 H 0.011 0.989 5 C -0.620 4.620 6 H 0.078 0.922 7 C -0.182 4.182 8 N -0.548 5.548 9 Si 0.895 3.105 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.213 1.213 13 N -0.238 5.238 14 C -0.109 4.109 15 C -0.073 4.073 16 C 0.302 3.698 17 O -0.372 6.372 18 O -0.278 6.278 19 C 0.034 3.966 20 C -0.093 4.093 21 C -0.114 4.114 22 C -0.142 4.142 23 C -0.131 4.131 24 C -0.142 4.142 25 C -0.113 4.113 26 H 0.039 0.961 27 H 0.083 0.917 28 H 0.064 0.936 29 H 0.041 0.959 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.029 0.971 33 H 0.069 0.931 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.130 0.870 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.143 0.857 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.915 -0.323 -19.746 19.962 hybrid contribution 0.679 0.158 -1.846 1.974 sum -2.236 -0.165 -21.592 21.708 Atomic orbital electron populations 1.21445 0.96093 0.98081 1.02297 1.21682 0.96653 0.98090 0.99103 1.19465 0.92000 0.90794 0.87694 0.98912 1.21814 1.31059 1.18340 0.90772 0.92231 1.25722 0.94702 0.96014 1.01788 1.70815 1.23447 1.28376 1.32132 0.83567 0.75841 0.75632 0.75452 1.20929 1.21544 1.21318 1.61703 1.59675 1.02946 0.99509 1.22280 0.97207 0.88973 1.02478 1.21688 0.94963 1.02241 0.88398 1.24117 0.84323 0.78497 0.82822 1.90630 1.29996 1.32678 1.83933 1.86587 1.56252 1.67892 1.17079 1.21712 0.93511 0.98616 0.82760 1.19585 0.98714 0.96189 0.94792 1.21118 0.95933 0.99977 0.94402 1.21162 1.00263 0.96349 0.96443 1.21227 0.96805 0.95353 0.99752 1.21167 0.98138 1.00125 0.94742 1.21135 0.99463 0.94541 0.96204 0.96053 0.91719 0.93589 0.95950 0.91333 0.91931 0.97103 0.93068 0.89876 0.91759 0.86951 0.90386 0.90523 0.85775 0.85783 0.85932 0.85746 0.85675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.63 9.52 37.16 0.35 -2.28 16 2 C -0.12 -2.64 5.07 -26.73 -0.14 -2.78 16 3 C 0.21 4.98 1.39 -68.86 -0.10 4.88 16 4 H -0.01 -0.17 7.54 -51.93 -0.39 -0.56 16 5 C -0.58 -15.54 6.56 -34.44 -0.23 -15.77 16 6 H 0.06 1.63 6.40 -52.49 -0.34 1.29 16 7 C 0.02 0.60 5.19 -17.82 -0.09 0.51 16 8 N -0.91 -26.36 13.01 55.43 0.72 -25.64 16 9 Si 1.07 24.75 29.91 -169.99 -5.08 19.66 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 13 N -0.51 -11.06 3.43 -237.73 -0.82 -11.88 16 14 C 0.04 0.80 8.85 60.06 0.53 1.34 16 15 C 0.06 1.02 5.45 -4.98 -0.03 0.99 16 16 C 0.46 8.02 7.67 36.00 0.28 8.29 16 17 O -0.49 -9.65 14.63 -18.75 -0.27 -9.93 16 18 O -0.36 -5.43 10.20 -39.27 -0.40 -5.83 16 19 C 0.11 1.34 5.59 36.01 0.20 1.54 16 20 C -0.09 -1.02 5.52 -104.62 -0.58 -1.60 16 21 C -0.10 -0.95 9.70 -39.58 -0.38 -1.33 16 22 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 23 C -0.11 -0.91 10.05 -39.58 -0.40 -1.31 16 24 C -0.12 -1.06 10.05 -39.58 -0.40 -1.45 16 25 C -0.10 -0.95 9.70 -39.58 -0.38 -1.33 16 26 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 1.53 7.18 -51.93 -0.37 1.16 16 28 H 0.05 0.98 7.66 -51.93 -0.40 0.58 16 29 H 0.02 0.45 6.30 -51.93 -0.33 0.12 16 30 H 0.07 1.70 6.27 -51.93 -0.33 1.38 16 31 H 0.27 7.73 6.00 -40.82 -0.24 7.48 16 32 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.05 1.00 6.42 -51.93 -0.33 0.67 16 34 H 0.08 1.84 6.16 -51.93 -0.32 1.52 16 35 H 0.06 1.08 8.05 -51.93 -0.42 0.66 16 36 H 0.11 1.95 5.81 -51.93 -0.30 1.65 16 37 H 0.08 0.95 8.08 -51.93 -0.42 0.53 16 38 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 39 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 41 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 42 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 43 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 349.36 15.07 5.26 5.26 Total: -1.00 -30.65 349.36 -8.71 -39.35 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -6.36 Total: 0.73 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: -1.75 Total: -11.74 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: -0.10 Total: -37.51 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.67 Total: -15.76 kcal Atomic # 14 Polarization: 24.75 SS G_CDS: -5.08 Total: 19.66 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.65 -8.71 -39.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177014.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.854 kcal (2) G-P(sol) polarization free energy of solvation -30.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds