Wall clock time and date at job start Tue Mar 31 2020 06:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46610 * 2 1 4 4 H 1.08996 * 109.46650 * 182.90948 * 3 2 1 5 5 C 1.50702 * 109.47143 * 62.90873 * 3 2 1 6 6 H 1.07999 * 119.99927 * 244.57334 * 5 3 2 7 7 C 1.37879 * 119.99761 * 64.57911 * 5 3 2 8 8 N 1.31510 * 120.00075 * 8.84632 * 7 5 3 9 9 Si 1.86802 * 119.99725 * 188.85039 * 7 5 3 10 10 H 1.48499 * 109.47251 * 179.97438 * 9 7 5 11 11 H 1.48502 * 109.46807 * 299.99467 * 9 7 5 12 12 H 1.48504 * 109.47231 * 59.99520 * 9 7 5 13 13 N 1.46903 * 109.47142 * 302.90943 * 3 2 1 14 14 C 1.46901 * 110.99932 * 173.12835 * 13 3 2 15 15 C 1.46904 * 110.99813 * 297.08219 * 13 3 2 16 16 C 1.50695 * 109.46887 * 163.58780 * 15 13 3 17 17 O 1.20824 * 120.00432 * 0.02562 * 16 15 13 18 18 O 1.34233 * 120.00014 * 179.97438 * 16 15 13 19 19 C 1.45204 * 117.00089 * 180.02562 * 18 16 15 20 20 C 1.50699 * 109.47046 * 180.02562 * 19 18 16 21 21 C 1.38231 * 120.00115 * 269.73353 * 20 19 18 22 22 C 1.38242 * 119.99823 * 179.76917 * 21 20 19 23 23 C 1.38237 * 119.99947 * 0.50167 * 22 21 20 24 24 C 1.38233 * 119.99838 * 359.74413 * 23 22 21 25 25 C 1.38235 * 120.00256 * 0.02562 * 24 23 22 26 26 H 1.09003 * 109.46612 * 184.07067 * 1 2 3 27 27 H 1.09000 * 109.47550 * 304.07117 * 1 2 3 28 28 H 1.09000 * 109.47456 * 64.07491 * 1 2 3 29 29 H 1.08993 * 109.47286 * 240.00276 * 2 1 3 30 30 H 1.08991 * 109.47230 * 119.99248 * 2 1 3 31 31 H 0.96998 * 120.00365 * 357.74915 * 8 7 5 32 32 H 1.08997 * 109.46811 * 60.00186 * 14 13 3 33 33 H 1.08994 * 109.46996 * 179.97438 * 14 13 3 34 34 H 1.08993 * 109.46909 * 299.99731 * 14 13 3 35 35 H 1.09003 * 109.46781 * 283.59108 * 15 13 3 36 36 H 1.09002 * 109.46929 * 43.58937 * 15 13 3 37 37 H 1.08998 * 109.47224 * 300.00704 * 19 18 16 38 38 H 1.08999 * 109.47001 * 60.00647 * 19 18 16 39 39 H 1.07999 * 120.00085 * 359.97438 * 21 20 19 40 40 H 1.08003 * 119.99728 * 180.22375 * 22 21 20 41 41 H 1.07993 * 120.00019 * 179.72912 * 23 22 21 42 42 H 1.07997 * 120.00098 * 179.97438 * 24 23 22 43 43 H 1.07997 * 120.00222 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1286 1.4431 -0.0522 5 6 1.5973 2.1319 1.2649 6 1 0.9132 2.9661 1.2143 7 6 2.0656 1.6975 2.4868 8 7 3.0268 0.8016 2.5419 9 14 1.3347 2.3814 4.0640 10 1 2.0060 1.7570 5.2322 11 1 1.5352 3.8523 4.1053 12 1 -0.1184 2.0784 4.1083 13 7 1.4936 2.1551 -1.1628 14 6 1.8283 3.5844 -1.1092 15 6 1.9616 1.5514 -2.4176 16 6 1.0941 2.0229 -3.5560 17 8 0.1801 2.7842 -3.3440 18 8 1.3374 1.5981 -4.8059 19 6 0.4619 2.0938 -5.8528 20 6 0.8842 1.5129 -7.1777 21 6 1.8077 2.1789 -7.9615 22 6 2.1986 1.6437 -9.1746 23 6 1.6583 0.4476 -9.6086 24 6 0.7309 -0.2158 -8.8271 25 6 0.3436 0.3170 -7.6118 26 1 -0.3633 -1.0251 0.0730 27 1 -0.3634 0.5757 0.8512 28 1 -0.3634 0.4493 -0.9242 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 3.3838 0.4223 1.7236 32 1 2.9117 3.7039 -1.1035 33 1 1.4122 4.0879 -1.9819 34 1 1.4096 4.0219 -0.2030 35 1 2.9944 1.8482 -2.6005 36 1 1.9036 0.4655 -2.3422 37 1 -0.5651 1.7985 -5.6377 38 1 0.5259 3.1811 -5.8955 39 1 2.2263 3.1158 -7.6246 40 1 2.9229 2.1622 -9.7854 41 1 1.9604 0.0316 -10.5584 42 1 0.3084 -1.1500 -9.1663 43 1 -0.3812 -0.2011 -7.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255177014.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:37 Heat of formation + Delta-G solvation = -69.864552 kcal Electronic energy + Delta-G solvation = -23033.581219 eV Core-core repulsion = 19657.395704 eV Total energy + Delta-G solvation = -3376.185515 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.65776 -40.13169 -39.12110 -37.42289 -35.12751 -33.21184 -32.92919 -31.85740 -30.19214 -27.91681 -27.52896 -26.06128 -24.32745 -23.54672 -22.53280 -22.09938 -20.93588 -19.12166 -18.35714 -18.04343 -17.79752 -17.11219 -16.78539 -16.05713 -16.02318 -15.78181 -15.59579 -15.28592 -14.62576 -14.41158 -14.22179 -14.04535 -13.88499 -13.81720 -13.66134 -13.27033 -13.23390 -12.80058 -12.66841 -12.56355 -12.12331 -12.07607 -12.03013 -11.94220 -11.85261 -11.69142 -11.61106 -11.32834 -10.51255 -10.41246 -9.88114 -9.85129 -9.12531 -8.53217 -6.22994 0.16742 0.44435 1.16260 1.56110 1.62732 1.63923 1.81875 2.59025 2.85256 3.19261 3.27076 3.56173 3.76730 3.87985 4.07201 4.10213 4.20061 4.23497 4.24773 4.29959 4.36920 4.48623 4.50390 4.57807 4.65562 4.68053 4.72118 4.97943 5.02370 5.07631 5.09889 5.18832 5.28088 5.31451 5.44749 5.49999 5.55768 5.57074 5.67799 5.88968 6.02753 6.03021 6.34496 6.49960 6.71650 6.79962 7.52039 8.84323 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.036209 B = 0.002926 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.106892 B = 9567.232631 C = 9773.144780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.112 4.112 3 C 0.210 3.790 4 H -0.032 1.032 5 C -0.584 4.584 6 H 0.049 0.951 7 C -0.022 4.022 8 N -0.935 5.935 9 Si 1.106 2.894 10 H -0.286 1.286 11 H -0.275 1.275 12 H -0.275 1.275 13 N -0.523 5.523 14 C 0.046 3.954 15 C 0.055 3.945 16 C 0.472 3.528 17 O -0.515 6.515 18 O -0.357 6.357 19 C 0.107 3.893 20 C -0.114 4.114 21 C -0.109 4.109 22 C -0.128 4.128 23 C -0.112 4.112 24 C -0.128 4.128 25 C -0.109 4.109 26 H 0.045 0.955 27 H 0.038 0.962 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.044 0.956 31 H 0.261 0.739 32 H 0.013 0.987 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.122 0.878 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.130 0.870 40 H 0.147 0.853 41 H 0.150 0.850 42 H 0.147 0.853 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.467 -0.927 -23.468 23.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.150 4.150 3 C 0.104 3.896 4 H -0.014 1.014 5 C -0.622 4.622 6 H 0.067 0.933 7 C -0.221 4.221 8 N -0.573 5.573 9 Si 0.930 3.070 10 H -0.212 1.212 11 H -0.201 1.201 12 H -0.201 1.201 13 N -0.248 5.248 14 C -0.102 4.102 15 C -0.074 4.074 16 C 0.315 3.685 17 O -0.403 6.403 18 O -0.274 6.274 19 C 0.034 3.966 20 C -0.114 4.114 21 C -0.127 4.127 22 C -0.146 4.146 23 C -0.130 4.130 24 C -0.146 4.146 25 C -0.127 4.127 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.031 0.969 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.140 0.860 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.148 0.852 40 H 0.165 0.835 41 H 0.168 0.832 42 H 0.164 0.836 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.161 -0.786 -21.783 22.025 hybrid contribution 0.774 0.290 -1.415 1.638 sum -2.387 -0.496 -23.198 23.325 Atomic orbital electron populations 1.21320 0.95142 0.99201 1.01168 1.21573 0.97337 0.96928 0.99182 1.19289 0.90473 0.91840 0.88017 1.01443 1.22032 1.30181 1.17911 0.92119 0.93326 1.26886 0.94506 0.95861 1.04814 1.70913 1.24892 1.29828 1.31694 0.83043 0.75759 0.75842 0.72367 1.21199 1.20084 1.20053 1.61594 1.59930 1.03125 1.00186 1.22179 0.97220 0.88784 1.02025 1.21707 0.95920 1.02563 0.87221 1.23790 0.83490 0.77843 0.83419 1.90623 1.31114 1.34013 1.84520 1.86565 1.56711 1.67534 1.16600 1.21905 0.93116 0.98941 0.82671 1.19575 1.00269 0.97248 0.94307 1.21312 0.95919 1.00383 0.95089 1.21488 1.00432 0.96643 0.96057 1.21624 0.95898 0.94930 1.00569 1.21485 0.98066 1.00922 0.94145 1.21319 0.99820 0.94439 0.97153 0.93567 0.94286 0.93354 0.93262 0.93782 0.92903 0.96878 0.91818 0.91837 0.90177 0.86014 0.90372 0.90252 0.85229 0.83538 0.83236 0.83573 0.85299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.69 9.52 71.98 0.68 -4.00 16 2 C -0.11 -5.02 5.07 30.60 0.16 -4.86 16 3 C 0.21 10.23 1.39 44.17 0.06 10.29 16 4 H -0.03 -1.69 7.54 -2.39 -0.02 -1.70 16 5 C -0.58 -31.62 6.56 25.60 0.17 -31.45 16 6 H 0.05 2.70 6.40 -2.91 -0.02 2.68 16 7 C -0.02 -1.20 5.19 84.66 0.44 -0.76 16 8 N -0.94 -54.93 13.01 21.45 0.28 -54.65 16 9 Si 1.11 49.97 29.91 68.60 2.05 52.02 16 10 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 11 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 12 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 13 N -0.52 -22.41 3.43 -906.03 -3.11 -25.52 16 14 C 0.05 1.91 8.85 127.69 1.13 3.04 16 15 C 0.05 1.92 5.45 85.55 0.47 2.39 16 16 C 0.47 15.93 7.67 71.23 0.55 16.47 16 17 O -0.52 -20.06 14.63 21.97 0.32 -19.74 16 18 O -0.36 -10.37 10.20 -51.44 -0.52 -10.90 16 19 C 0.11 2.59 5.59 71.24 0.40 2.98 16 20 C -0.11 -2.39 5.52 -19.87 -0.11 -2.50 16 21 C -0.11 -1.99 9.70 22.27 0.22 -1.78 16 22 C -0.13 -1.86 10.05 22.27 0.22 -1.64 16 23 C -0.11 -1.48 10.05 22.27 0.22 -1.25 16 24 C -0.13 -1.89 10.05 22.27 0.22 -1.66 16 25 C -0.11 -2.03 9.70 22.27 0.22 -1.82 16 26 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.04 1.82 7.18 -2.39 -0.02 1.80 16 28 H 0.05 1.99 7.66 -2.39 -0.02 1.98 16 29 H 0.05 1.91 6.30 -2.39 -0.02 1.90 16 30 H 0.04 2.19 6.27 -2.39 -0.02 2.18 16 31 H 0.26 15.31 6.00 -92.71 -0.56 14.75 16 32 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.06 2.47 6.42 -2.39 -0.02 2.45 16 34 H 0.06 2.86 6.16 -2.39 -0.01 2.84 16 35 H 0.08 2.58 8.05 -2.39 -0.02 2.56 16 36 H 0.12 4.02 5.81 -2.39 -0.01 4.00 16 37 H 0.08 1.87 8.08 -2.39 -0.02 1.85 16 38 H 0.08 1.85 8.08 -2.39 -0.02 1.83 16 39 H 0.13 2.10 8.06 -2.91 -0.02 2.08 16 40 H 0.15 1.39 8.06 -2.91 -0.02 1.36 16 41 H 0.15 1.12 8.06 -2.91 -0.02 1.09 16 42 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 43 H 0.13 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -65.61 349.36 5.26 -60.34 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 1.20 Total: 14.99 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: 5.04 Total: -16.55 kcal Atomic # 7 Polarization: -77.33 SS G_CDS: -2.83 Total: -80.16 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: -0.20 Total: -30.64 kcal Atomic # 14 Polarization: 49.97 SS G_CDS: 2.05 Total: 52.02 kcal Total: -65.61 5.26 -60.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177014.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.523 kcal (2) G-P(sol) polarization free energy of solvation -65.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds