Wall clock time and date at job start Tue Mar 31 2020 06:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47022 * 2 1 4 4 H 1.09001 * 109.47117 * 302.06562 * 3 2 1 5 5 C 1.50693 * 109.47309 * 182.06184 * 3 2 1 6 6 H 1.08000 * 120.00501 * 245.71694 * 5 3 2 7 7 C 1.37879 * 119.99732 * 65.71162 * 5 3 2 8 8 N 1.31506 * 120.00147 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99923 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47072 * 90.00391 * 9 7 5 11 11 H 1.48495 * 109.47371 * 210.00183 * 9 7 5 12 12 H 1.48502 * 109.47096 * 330.00476 * 9 7 5 13 13 N 1.46905 * 109.47050 * 62.06239 * 3 2 1 14 14 C 1.46899 * 111.00211 * 274.04625 * 13 3 2 15 15 C 1.53002 * 109.46858 * 289.51427 * 14 13 3 16 16 C 1.46899 * 110.99910 * 37.99912 * 13 3 2 17 17 C 1.50697 * 109.47324 * 163.12425 * 16 13 3 18 18 C 1.38250 * 119.93366 * 270.02223 * 17 16 13 19 19 C 1.38236 * 120.14849 * 179.74630 * 18 17 16 20 20 C 1.38548 * 120.02793 * 0.43118 * 19 18 17 21 21 C 1.39264 * 119.82669 * 359.57029 * 20 19 18 22 22 C 1.38239 * 119.93011 * 89.99504 * 17 16 13 23 23 O 1.36498 * 108.64064 * 180.25003 * 21 20 19 24 24 C 1.43987 * 105.48365 * 342.71712 * 23 21 20 25 25 O 1.36499 * 131.53174 * 179.87693 * 20 19 18 26 26 H 1.09002 * 109.46950 * 44.40429 * 1 2 3 27 27 H 1.09001 * 109.47194 * 164.40087 * 1 2 3 28 28 H 1.08994 * 109.47538 * 284.40838 * 1 2 3 29 29 H 1.08996 * 109.47299 * 240.00575 * 2 1 3 30 30 H 1.08992 * 109.46873 * 119.99546 * 2 1 3 31 31 H 0.97000 * 120.00418 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.47144 * 49.51404 * 14 13 3 33 33 H 1.09003 * 109.46981 * 169.52010 * 14 13 3 34 34 H 1.09000 * 109.47700 * 306.97356 * 15 14 13 35 35 H 1.09004 * 109.46814 * 66.97235 * 15 14 13 36 36 H 1.08996 * 109.47173 * 186.97143 * 15 14 13 37 37 H 1.08997 * 109.47641 * 43.12375 * 16 13 3 38 38 H 1.08998 * 109.46958 * 283.12467 * 16 13 3 39 39 H 1.08009 * 119.92518 * 359.97438 * 18 17 16 40 40 H 1.08000 * 119.98840 * 180.33098 * 19 18 17 41 41 H 1.08000 * 119.98267 * 0.03529 * 22 17 16 42 42 H 1.08996 * 110.57146 * 268.55273 * 24 23 21 43 43 H 1.09001 * 110.56595 * 145.67930 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6467 1.9669 -0.8709 5 6 3.5461 1.4429 -0.0511 6 1 4.1148 1.8174 0.7871 7 6 4.1980 0.9650 -1.1681 8 7 3.5056 0.5093 -2.1890 9 14 6.0650 0.9648 -1.2312 10 1 6.5785 -0.3184 -0.6881 11 1 6.5128 1.1211 -2.6384 12 1 6.5880 2.0914 -0.4173 13 7 1.5914 2.1205 1.2236 14 6 0.2466 2.6853 1.0497 15 6 0.3140 3.8776 0.0932 16 6 1.6352 1.2104 2.3759 17 6 1.5778 2.0113 3.6511 18 6 2.7476 2.4484 4.2445 19 6 2.6999 3.1879 5.4115 20 6 1.4787 3.4853 5.9944 21 6 0.3003 3.0451 5.3967 22 6 0.3556 2.3080 4.2249 23 8 -0.7557 3.4664 6.1520 24 6 -0.1973 3.8169 7.4320 25 8 1.1609 4.1823 7.1242 26 1 -0.3633 0.7342 -0.7191 27 1 -0.3634 -0.9898 -0.2763 28 1 -0.3634 0.2557 0.9953 29 1 1.8934 -0.5137 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 3.9642 0.1735 -2.9750 32 1 -0.4162 1.9250 0.6366 33 1 -0.1365 3.0154 2.0154 34 1 1.0687 4.5819 0.4430 35 1 0.5780 3.5280 -0.9049 36 1 -0.6568 4.3721 0.0600 37 1 2.5606 0.6350 2.3496 38 1 0.7838 0.5311 2.3349 39 1 3.7006 2.2147 3.7933 40 1 3.6150 3.5325 5.8699 41 1 -0.5566 1.9652 3.7593 42 1 -0.2202 2.9614 8.1070 43 1 -0.7326 4.6620 7.8649 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255177168.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:11 Heat of formation + Delta-G solvation = -24.083942 kcal Electronic energy + Delta-G solvation = -24073.791796 eV Core-core repulsion = 20699.591477 eV Total energy + Delta-G solvation = -3374.200319 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.06223 -38.80749 -37.07647 -36.21924 -32.98576 -31.36798 -31.15359 -30.29417 -28.99350 -27.07134 -25.87852 -24.42756 -23.28894 -22.75334 -21.67831 -20.82647 -18.94947 -17.82715 -17.43975 -17.20839 -16.42712 -16.17430 -15.07799 -14.66871 -14.47222 -14.33131 -14.05249 -13.79602 -13.62062 -13.07074 -13.03102 -12.91743 -12.72264 -12.56227 -11.89714 -11.74639 -11.43866 -11.24928 -11.10607 -10.91398 -10.82251 -10.69363 -10.61319 -10.52767 -10.30361 -10.16706 -9.81201 -9.49444 -8.94527 -8.63953 -8.34066 -7.84481 -7.04384 -5.99459 -4.01267 1.33612 1.40437 2.81910 3.32074 3.39551 3.43312 3.46802 3.75996 4.44118 4.59490 4.61796 4.79426 5.07526 5.20292 5.25243 5.29615 5.34079 5.50682 5.62839 5.78502 5.85614 6.04190 6.06015 6.10412 6.18941 6.21655 6.24087 6.35952 6.38295 6.46253 6.48153 6.63784 6.66457 6.76499 6.84426 6.94647 6.98189 7.21546 7.26061 7.45203 7.62096 7.88421 8.21835 8.37619 8.61071 9.05639 9.63379 11.08518 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020091 B = 0.004506 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.294806 B = 6212.065166 C = 6993.879949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.148 4.148 3 C 0.215 3.785 4 H 0.047 0.953 5 C -0.494 4.494 6 H 0.062 0.938 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.892 3.108 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.520 5.520 14 C 0.027 3.973 15 C -0.141 4.141 16 C 0.096 3.904 17 C -0.047 4.047 18 C -0.087 4.087 19 C -0.100 4.100 20 C 0.015 3.985 21 C 0.025 3.975 22 C -0.097 4.097 23 O -0.313 6.313 24 C 0.214 3.786 25 O -0.314 6.314 26 H 0.048 0.952 27 H 0.033 0.967 28 H 0.041 0.959 29 H 0.087 0.913 30 H 0.041 0.959 31 H 0.259 0.741 32 H 0.044 0.956 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.041 0.959 37 H 0.092 0.908 38 H 0.040 0.960 39 H 0.142 0.858 40 H 0.131 0.869 41 H 0.129 0.871 42 H 0.079 0.921 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.859 2.906 14.196 16.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.188 4.188 3 C 0.109 3.891 4 H 0.065 0.935 5 C -0.533 4.533 6 H 0.080 0.920 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.721 3.279 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.244 5.244 14 C -0.101 4.101 15 C -0.199 4.199 16 C -0.031 4.031 17 C -0.048 4.048 18 C -0.106 4.106 19 C -0.118 4.118 20 C -0.029 4.029 21 C -0.019 4.019 22 C -0.116 4.116 23 O -0.230 6.230 24 C 0.102 3.898 25 O -0.231 6.231 26 H 0.067 0.933 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.105 0.895 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.060 0.940 37 H 0.111 0.889 38 H 0.058 0.942 39 H 0.160 0.840 40 H 0.149 0.851 41 H 0.147 0.853 42 H 0.096 0.904 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.621 3.403 14.172 16.008 hybrid contribution 0.260 -0.586 -0.058 0.643 sum -6.360 2.817 14.114 15.735 Atomic orbital electron populations 1.22176 0.99545 0.99709 0.99666 1.22260 0.91616 1.02365 1.02544 1.19435 0.95118 0.88203 0.86310 0.93513 1.21122 0.90687 1.39826 1.01625 0.92013 1.24919 0.98085 0.95619 0.95626 1.69908 1.35034 1.42645 1.05896 0.86591 0.85996 0.78276 0.77086 1.20908 1.21468 1.19876 1.62344 1.22028 1.35169 1.04892 1.22465 0.91838 0.97011 0.98758 1.21718 1.00000 0.98099 1.00077 1.21045 1.02231 0.92786 0.87082 1.19924 0.91191 0.97482 0.96162 1.20930 0.99335 0.96893 0.93433 1.20079 0.94239 1.00603 0.96923 1.19744 0.95150 0.98122 0.89881 1.19717 0.84623 1.00982 0.96594 1.20000 0.98968 0.99128 0.93544 1.87330 1.30335 1.81010 1.24294 1.25513 0.77912 1.00351 0.86024 1.87317 1.30161 1.63682 1.41903 0.93287 0.94771 0.94015 0.89453 0.93993 0.93093 0.93773 0.92552 0.92354 0.92398 0.93967 0.88926 0.94205 0.84025 0.85115 0.85325 0.90377 0.85678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 8.08 37.16 0.30 -2.55 16 2 C -0.15 -3.25 4.75 -26.73 -0.13 -3.37 16 3 C 0.22 4.99 1.63 -68.86 -0.11 4.88 16 4 H 0.05 1.22 6.18 -51.93 -0.32 0.90 16 5 C -0.49 -12.80 8.25 -34.44 -0.28 -13.08 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.55 5.32 -17.82 -0.09 1.45 16 8 N -0.90 -24.68 11.74 55.43 0.65 -24.03 16 9 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 13 N -0.52 -10.35 4.24 -229.48 -0.97 -11.32 16 14 C 0.03 0.48 5.13 -3.82 -0.02 0.47 16 15 C -0.14 -2.47 9.84 37.16 0.37 -2.11 16 16 C 0.10 1.69 3.55 -4.98 -0.02 1.68 16 17 C -0.05 -0.74 5.10 -104.62 -0.53 -1.27 16 18 C -0.09 -1.31 9.69 -39.58 -0.38 -1.69 16 19 C -0.10 -1.40 10.06 -39.47 -0.40 -1.79 16 20 C 0.01 0.22 7.15 -39.09 -0.28 -0.06 16 21 C 0.02 0.37 7.15 -39.09 -0.28 0.09 16 22 C -0.10 -1.47 8.14 -39.47 -0.32 -1.79 16 23 O -0.31 -4.33 11.40 -45.68 -0.52 -4.85 16 24 C 0.21 2.21 8.89 101.05 0.90 3.11 16 25 O -0.31 -4.25 11.40 -45.69 -0.52 -4.77 16 26 H 0.05 0.92 7.19 -51.93 -0.37 0.55 16 27 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.04 0.70 4.88 -51.93 -0.25 0.45 16 29 H 0.09 2.19 6.50 -51.93 -0.34 1.85 16 30 H 0.04 0.89 6.19 -51.93 -0.32 0.57 16 31 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.04 0.78 3.91 -51.93 -0.20 0.57 16 33 H 0.06 0.94 5.47 -51.93 -0.28 0.66 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.06 1.10 6.69 -51.93 -0.35 0.76 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.09 1.74 6.87 -51.93 -0.36 1.39 16 38 H 0.04 0.68 5.42 -51.93 -0.28 0.39 16 39 H 0.14 2.05 8.06 -52.48 -0.42 1.63 16 40 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 41 H 0.13 1.81 7.57 -52.49 -0.40 1.42 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.13 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 332.19 15.07 5.01 5.01 Total: -1.00 -28.40 332.19 -8.65 -37.04 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -5.98 Total: 3.21 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: -1.29 Total: -16.04 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: -0.32 Total: -35.35 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: -1.04 Total: -9.63 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.40 -8.65 -37.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177168.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.959 kcal (2) G-P(sol) polarization free energy of solvation -28.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds