Wall clock time and date at job start Tue Mar 31 2020 06:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47022 * 2 1 4 4 H 1.09001 * 109.47117 * 302.06562 * 3 2 1 5 5 C 1.50693 * 109.47309 * 182.06184 * 3 2 1 6 6 H 1.08000 * 120.00501 * 245.71694 * 5 3 2 7 7 C 1.37879 * 119.99732 * 65.71162 * 5 3 2 8 8 N 1.31506 * 120.00147 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99923 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47072 * 90.00391 * 9 7 5 11 11 H 1.48495 * 109.47371 * 210.00183 * 9 7 5 12 12 H 1.48502 * 109.47096 * 330.00476 * 9 7 5 13 13 N 1.46905 * 109.47050 * 62.06239 * 3 2 1 14 14 C 1.46899 * 111.00211 * 274.04625 * 13 3 2 15 15 C 1.53002 * 109.46858 * 289.51427 * 14 13 3 16 16 C 1.46899 * 110.99910 * 37.99912 * 13 3 2 17 17 C 1.50697 * 109.47324 * 163.12425 * 16 13 3 18 18 C 1.38250 * 119.93366 * 270.02223 * 17 16 13 19 19 C 1.38236 * 120.14849 * 179.74630 * 18 17 16 20 20 C 1.38548 * 120.02793 * 0.43118 * 19 18 17 21 21 C 1.39264 * 119.82669 * 359.57029 * 20 19 18 22 22 C 1.38239 * 119.93011 * 89.99504 * 17 16 13 23 23 O 1.36498 * 108.64064 * 180.25003 * 21 20 19 24 24 C 1.43987 * 105.48365 * 342.71712 * 23 21 20 25 25 O 1.36499 * 131.53174 * 179.87693 * 20 19 18 26 26 H 1.09002 * 109.46950 * 44.40429 * 1 2 3 27 27 H 1.09001 * 109.47194 * 164.40087 * 1 2 3 28 28 H 1.08994 * 109.47538 * 284.40838 * 1 2 3 29 29 H 1.08996 * 109.47299 * 240.00575 * 2 1 3 30 30 H 1.08992 * 109.46873 * 119.99546 * 2 1 3 31 31 H 0.97000 * 120.00418 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.47144 * 49.51404 * 14 13 3 33 33 H 1.09003 * 109.46981 * 169.52010 * 14 13 3 34 34 H 1.09000 * 109.47700 * 306.97356 * 15 14 13 35 35 H 1.09004 * 109.46814 * 66.97235 * 15 14 13 36 36 H 1.08996 * 109.47173 * 186.97143 * 15 14 13 37 37 H 1.08997 * 109.47641 * 43.12375 * 16 13 3 38 38 H 1.08998 * 109.46958 * 283.12467 * 16 13 3 39 39 H 1.08009 * 119.92518 * 359.97438 * 18 17 16 40 40 H 1.08000 * 119.98840 * 180.33098 * 19 18 17 41 41 H 1.08000 * 119.98267 * 0.03529 * 22 17 16 42 42 H 1.08996 * 110.57146 * 268.55273 * 24 23 21 43 43 H 1.09001 * 110.56595 * 145.67930 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6467 1.9669 -0.8709 5 6 3.5461 1.4429 -0.0511 6 1 4.1148 1.8174 0.7871 7 6 4.1980 0.9650 -1.1681 8 7 3.5056 0.5093 -2.1890 9 14 6.0650 0.9648 -1.2312 10 1 6.5785 -0.3184 -0.6881 11 1 6.5128 1.1211 -2.6384 12 1 6.5880 2.0914 -0.4173 13 7 1.5914 2.1205 1.2236 14 6 0.2466 2.6853 1.0497 15 6 0.3140 3.8776 0.0932 16 6 1.6352 1.2104 2.3759 17 6 1.5778 2.0113 3.6511 18 6 2.7476 2.4484 4.2445 19 6 2.6999 3.1879 5.4115 20 6 1.4787 3.4853 5.9944 21 6 0.3003 3.0451 5.3967 22 6 0.3556 2.3080 4.2249 23 8 -0.7557 3.4664 6.1520 24 6 -0.1973 3.8169 7.4320 25 8 1.1609 4.1823 7.1242 26 1 -0.3633 0.7342 -0.7191 27 1 -0.3634 -0.9898 -0.2763 28 1 -0.3634 0.2557 0.9953 29 1 1.8934 -0.5137 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 3.9642 0.1735 -2.9750 32 1 -0.4162 1.9250 0.6366 33 1 -0.1365 3.0154 2.0154 34 1 1.0687 4.5819 0.4430 35 1 0.5780 3.5280 -0.9049 36 1 -0.6568 4.3721 0.0600 37 1 2.5606 0.6350 2.3496 38 1 0.7838 0.5311 2.3349 39 1 3.7006 2.2147 3.7933 40 1 3.6150 3.5325 5.8699 41 1 -0.5566 1.9652 3.7593 42 1 -0.2202 2.9614 8.1070 43 1 -0.7326 4.6620 7.8649 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255177168.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:11 Heat of formation + Delta-G solvation = -40.433836 kcal Electronic energy + Delta-G solvation = -24074.500781 eV Core-core repulsion = 20699.591477 eV Total energy + Delta-G solvation = -3374.909303 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.07625 -40.22229 -38.40285 -37.23245 -34.84179 -32.92010 -32.58779 -31.43871 -30.42652 -28.71920 -26.92671 -25.76292 -25.02251 -23.91342 -22.88337 -22.38457 -20.59712 -18.88630 -18.56209 -18.30539 -18.22462 -17.28420 -16.72425 -16.15001 -15.88329 -15.60770 -15.41225 -15.18195 -14.81640 -14.46966 -14.31331 -14.24214 -13.94133 -13.77852 -13.46561 -13.11335 -13.10468 -12.80064 -12.69336 -12.56388 -12.44354 -12.19540 -12.06036 -11.95715 -11.77555 -11.68474 -11.53990 -11.17411 -10.80124 -10.34864 -9.78120 -8.96726 -8.62223 -8.02041 -6.09646 0.18396 0.27936 1.45477 1.47834 1.56963 1.83407 2.48689 2.56278 2.60528 3.27654 3.52769 3.60405 3.85548 3.93799 4.09698 4.14996 4.30192 4.33700 4.35687 4.44617 4.46945 4.57552 4.58926 4.67364 4.77890 4.82516 4.91063 5.03200 5.09741 5.12456 5.14943 5.19951 5.29167 5.30435 5.46749 5.48982 5.50204 5.64842 5.71383 5.82215 5.87096 6.18518 6.37690 6.66772 6.85092 7.04563 7.58758 9.04248 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020091 B = 0.004506 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.294806 B = 6212.065166 C = 6993.879949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.141 4.141 3 C 0.223 3.777 4 H 0.015 0.985 5 C -0.504 4.504 6 H 0.055 0.945 7 C 0.013 3.987 8 N -0.922 5.922 9 Si 0.949 3.051 10 H -0.277 1.277 11 H -0.290 1.290 12 H -0.271 1.271 13 N -0.531 5.531 14 C 0.028 3.972 15 C -0.137 4.137 16 C 0.104 3.896 17 C -0.057 4.057 18 C -0.094 4.094 19 C -0.099 4.099 20 C 0.011 3.989 21 C 0.018 3.982 22 C -0.100 4.100 23 O -0.325 6.325 24 C 0.205 3.795 25 O -0.324 6.324 26 H 0.042 0.958 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.044 0.956 31 H 0.258 0.742 32 H 0.050 0.950 33 H 0.073 0.927 34 H 0.046 0.954 35 H 0.033 0.967 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.048 0.952 39 H 0.141 0.859 40 H 0.152 0.848 41 H 0.138 0.862 42 H 0.103 0.897 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.627 3.420 16.289 18.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.181 4.181 3 C 0.117 3.883 4 H 0.033 0.967 5 C -0.543 4.543 6 H 0.073 0.927 7 C -0.185 4.185 8 N -0.563 5.563 9 Si 0.776 3.224 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.195 1.195 13 N -0.254 5.254 14 C -0.100 4.100 15 C -0.194 4.194 16 C -0.024 4.024 17 C -0.058 4.058 18 C -0.113 4.113 19 C -0.117 4.117 20 C -0.034 4.034 21 C -0.026 4.026 22 C -0.119 4.119 23 O -0.242 6.242 24 C 0.094 3.906 25 O -0.241 6.241 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.052 0.948 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.066 0.934 39 H 0.159 0.841 40 H 0.169 0.831 41 H 0.156 0.844 42 H 0.121 0.879 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -7.398 3.923 16.293 18.319 hybrid contribution 0.447 -0.685 -0.589 1.008 sum -6.951 3.238 15.704 17.476 Atomic orbital electron populations 1.22045 0.96734 1.00514 1.00731 1.22071 0.94110 1.01005 1.00868 1.19123 0.93683 0.88775 0.86760 0.96744 1.21435 0.92432 1.39140 1.01253 0.92701 1.25585 1.01825 0.95609 0.95494 1.70034 1.36331 1.43613 1.06290 0.85697 0.81571 0.78377 0.76789 1.20315 1.21630 1.19545 1.62233 1.23631 1.35395 1.04181 1.22517 0.90758 0.97053 0.99641 1.21681 1.01249 0.97945 0.98572 1.20919 1.01630 0.92721 0.87093 1.19718 0.92036 0.98367 0.95719 1.20991 0.99121 0.97193 0.93953 1.20252 0.95112 0.99969 0.96406 1.19931 0.95272 0.97874 0.90277 1.19810 0.85236 1.00874 0.96689 1.20006 0.98867 0.99206 0.93781 1.87308 1.30428 1.80930 1.25539 1.26095 0.76636 1.02928 0.84937 1.87301 1.31830 1.63642 1.41346 0.93881 0.93304 0.91993 0.92958 0.93703 0.93345 0.93226 0.90907 0.93451 0.94753 0.91018 0.90688 0.93386 0.84124 0.83051 0.84429 0.87936 0.82216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.17 8.08 71.98 0.58 -4.59 16 2 C -0.14 -6.25 4.75 30.60 0.15 -6.10 16 3 C 0.22 10.60 1.63 44.17 0.07 10.67 16 4 H 0.01 0.79 6.18 -2.39 -0.01 0.78 16 5 C -0.50 -26.69 8.25 25.60 0.21 -26.48 16 6 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 7 C 0.01 0.70 5.32 84.66 0.45 1.15 16 8 N -0.92 -52.22 11.74 21.45 0.25 -51.97 16 9 Si 0.95 43.25 29.54 68.60 2.03 45.27 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 13 N -0.53 -21.08 4.24 -879.93 -3.73 -24.81 16 14 C 0.03 0.96 5.13 86.30 0.44 1.40 16 15 C -0.14 -4.73 9.84 71.98 0.71 -4.02 16 16 C 0.10 3.60 3.55 85.56 0.30 3.91 16 17 C -0.06 -1.77 5.10 -19.86 -0.10 -1.87 16 18 C -0.09 -2.73 9.69 22.27 0.22 -2.52 16 19 C -0.10 -2.61 10.06 22.34 0.22 -2.38 16 20 C 0.01 0.30 7.15 22.59 0.16 0.46 16 21 C 0.02 0.51 7.15 22.59 0.16 0.67 16 22 C -0.10 -2.84 8.14 22.34 0.18 -2.65 16 23 O -0.33 -8.16 11.40 -76.02 -0.87 -9.03 16 24 C 0.20 3.57 8.89 113.37 1.01 4.57 16 25 O -0.32 -7.94 11.40 -76.04 -0.87 -8.81 16 26 H 0.04 1.59 7.19 -2.39 -0.02 1.58 16 27 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.06 1.97 4.88 -2.39 -0.01 1.96 16 29 H 0.05 2.69 6.50 -2.39 -0.02 2.68 16 30 H 0.04 1.92 6.19 -2.39 -0.01 1.90 16 31 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 32 H 0.05 1.67 3.91 -2.39 -0.01 1.66 16 33 H 0.07 2.29 5.47 -2.39 -0.01 2.27 16 34 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.03 1.33 6.69 -2.39 -0.02 1.31 16 36 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.07 2.85 6.87 -2.39 -0.02 2.83 16 38 H 0.05 1.57 5.42 -2.39 -0.01 1.56 16 39 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 40 H 0.15 3.26 8.06 -2.91 -0.02 3.23 16 41 H 0.14 3.58 7.57 -2.91 -0.02 3.56 16 42 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.16 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -61.58 332.19 2.60 -58.98 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 1.02 Total: 18.14 kcal Atomic # 6 Polarization: -32.54 SS G_CDS: 4.77 Total: -27.78 kcal Atomic # 7 Polarization: -73.30 SS G_CDS: -3.48 Total: -76.78 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -1.73 Total: -17.84 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -61.58 2.60 -58.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177168.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.549 kcal (2) G-P(sol) polarization free energy of solvation -61.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds