Wall clock time and date at job start Tue Mar 31 2020 06:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46911 * 2 1 4 4 H 1.09003 * 109.47047 * 200.38588 * 3 2 1 5 5 C 1.50699 * 109.47201 * 320.38647 * 3 2 1 6 6 H 1.08001 * 119.99776 * 126.91661 * 5 3 2 7 7 C 1.37876 * 120.00193 * 306.91449 * 5 3 2 8 8 N 1.31509 * 120.00065 * 159.24374 * 7 5 3 9 9 Si 1.86797 * 119.99790 * 339.24401 * 7 5 3 10 10 H 1.48500 * 109.47226 * 274.80565 * 9 7 5 11 11 H 1.48500 * 109.47574 * 34.80642 * 9 7 5 12 12 H 1.48508 * 109.47209 * 154.80689 * 9 7 5 13 13 N 1.46908 * 109.47087 * 80.39005 * 3 2 1 14 14 C 1.46904 * 110.99443 * 297.66604 * 13 3 2 15 15 C 1.52999 * 109.46547 * 194.91063 * 14 13 3 16 16 C 1.46898 * 110.99990 * 61.62159 * 13 3 2 17 17 C 1.50700 * 109.47413 * 75.49715 * 16 13 3 18 18 C 1.38251 * 119.92688 * 93.71506 * 17 16 13 19 19 C 1.38232 * 120.14575 * 179.97438 * 18 17 16 20 20 C 1.38548 * 120.02659 * 0.02613 * 19 18 17 21 21 C 1.39267 * 119.82861 * 359.97438 * 20 19 18 22 22 C 1.38231 * 119.92693 * 273.44719 * 17 16 13 23 23 O 1.36500 * 108.64240 * 180.02562 * 21 20 19 24 24 C 1.43994 * 105.48124 * 342.71342 * 23 21 20 25 25 O 1.36505 * 131.53381 * 179.97438 * 20 19 18 26 26 H 1.08996 * 109.47530 * 52.74028 * 1 2 3 27 27 H 1.09001 * 109.47053 * 172.74365 * 1 2 3 28 28 H 1.09005 * 109.47159 * 292.73848 * 1 2 3 29 29 H 1.09000 * 109.47430 * 240.00079 * 2 1 3 30 30 H 1.08999 * 109.47566 * 119.99978 * 2 1 3 31 31 H 0.96998 * 119.99562 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.47023 * 314.91072 * 14 13 3 33 33 H 1.09006 * 109.46865 * 74.91243 * 14 13 3 34 34 H 1.09005 * 109.47105 * 304.64875 * 15 14 13 35 35 H 1.08993 * 109.47168 * 64.65373 * 15 14 13 36 36 H 1.09006 * 109.46960 * 184.65347 * 15 14 13 37 37 H 1.09002 * 109.46930 * 195.49881 * 16 13 3 38 38 H 1.09002 * 109.47385 * 315.49594 * 16 13 3 39 39 H 1.08004 * 119.92678 * 0.02562 * 18 17 16 40 40 H 1.07997 * 119.99285 * 180.02562 * 19 18 17 41 41 H 1.07999 * 119.99223 * 359.97438 * 22 17 16 42 42 H 1.08997 * 110.57609 * 268.56022 * 24 23 21 43 43 H 1.09002 * 110.56720 * 145.68840 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.0693 1.4640 -0.3580 5 6 1.1754 2.2809 -0.9059 6 1 0.7287 3.1916 -0.5350 7 6 0.9548 1.8855 -2.2082 8 7 -0.0827 2.3498 -2.8696 9 14 2.1298 0.6904 -3.0331 10 1 3.2749 1.4401 -3.6092 11 1 2.6302 -0.2837 -2.0302 12 1 1.4183 -0.0354 -4.1159 13 7 1.9851 1.9813 1.3656 14 6 0.6028 2.0192 1.8614 15 6 0.5311 2.9089 3.1041 16 6 2.8481 1.2105 2.2706 17 6 4.2893 1.5739 2.0214 18 6 4.8926 2.5608 2.7787 19 6 6.2144 2.8974 2.5543 20 6 6.9380 2.2460 1.5685 21 6 6.3302 1.2519 0.8057 22 6 5.0066 0.9160 1.0400 23 8 7.2422 0.7685 -0.0875 24 6 8.2890 1.7558 -0.1404 25 8 8.2306 2.3859 1.1528 26 1 -0.3634 0.6221 -0.8179 27 1 -0.3633 -1.0194 -0.1298 28 1 -0.3634 0.3972 0.9478 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 -0.2381 2.0713 -3.7856 32 1 -0.0498 2.4228 1.0873 33 1 0.2810 1.0098 2.1180 34 1 1.2446 2.5531 3.8473 35 1 0.7731 3.9357 2.8302 36 1 -0.4758 2.8715 3.5200 37 1 2.5887 1.4409 3.3040 38 1 2.7055 0.1452 2.0892 39 1 4.3302 3.0693 3.5478 40 1 6.6833 3.6684 3.1475 41 1 4.5342 0.1421 0.4531 42 1 8.0915 2.4817 -0.9290 43 1 9.2577 1.2792 -0.2911 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255177169.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:14 Heat of formation + Delta-G solvation = -0.549427 kcal Electronic energy + Delta-G solvation = -24501.878975 eV Core-core repulsion = 21128.699189 eV Total energy + Delta-G solvation = -3373.179786 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.00625 -38.91771 -37.16614 -36.15380 -33.35305 -31.42497 -31.29328 -30.18449 -28.97620 -27.05068 -25.81178 -24.61347 -23.64773 -22.70319 -21.74229 -20.71979 -19.13457 -17.78605 -17.34267 -17.20397 -16.35607 -16.06922 -15.66656 -14.55980 -14.41801 -14.33390 -14.24320 -13.76580 -13.65236 -13.19323 -13.06141 -12.85999 -12.80094 -12.61222 -12.26029 -12.21704 -11.66868 -11.46625 -11.17470 -10.93585 -10.74827 -10.69842 -10.60204 -10.37589 -10.11961 -9.83277 -9.78690 -9.33706 -8.93357 -8.59449 -8.15359 -7.83948 -7.20760 -6.13265 -3.98522 1.34058 1.43157 2.85978 3.25128 3.34444 3.41131 3.52791 3.79089 4.42082 4.64360 4.71968 4.84676 4.94149 5.10845 5.20422 5.28112 5.29866 5.43638 5.61855 5.71918 5.81295 5.88427 5.97957 6.02383 6.20099 6.21172 6.24743 6.28043 6.39869 6.42226 6.43349 6.57926 6.74756 6.78211 6.83045 6.85241 7.01432 7.14032 7.26174 7.29258 7.57823 7.72573 7.98742 8.14570 8.66456 9.01499 9.56267 10.98909 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014676 B = 0.006398 C = 0.004956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.384977 B = 4375.437322 C = 5648.027913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.180 4.180 3 C 0.185 3.815 4 H 0.036 0.964 5 C -0.506 4.506 6 H 0.081 0.919 7 C 0.084 3.916 8 N -0.886 5.886 9 Si 0.836 3.164 10 H -0.281 1.281 11 H -0.236 1.236 12 H -0.290 1.290 13 N -0.513 5.513 14 C 0.048 3.952 15 C -0.149 4.149 16 C 0.078 3.922 17 C -0.044 4.044 18 C -0.094 4.094 19 C -0.101 4.101 20 C 0.018 3.982 21 C 0.029 3.971 22 C -0.088 4.088 23 O -0.312 6.312 24 C 0.213 3.787 25 O -0.315 6.315 26 H 0.096 0.904 27 H 0.016 0.984 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.035 0.965 31 H 0.263 0.737 32 H 0.100 0.900 33 H 0.033 0.967 34 H 0.043 0.957 35 H 0.057 0.943 36 H 0.047 0.953 37 H 0.078 0.922 38 H 0.048 0.952 39 H 0.136 0.864 40 H 0.131 0.869 41 H 0.132 0.868 42 H 0.082 0.918 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.417 -2.121 10.363 14.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.219 4.219 3 C 0.077 3.923 4 H 0.053 0.947 5 C -0.543 4.543 6 H 0.099 0.901 7 C -0.118 4.118 8 N -0.523 5.523 9 Si 0.665 3.335 10 H -0.207 1.207 11 H -0.162 1.162 12 H -0.217 1.217 13 N -0.237 5.237 14 C -0.079 4.079 15 C -0.206 4.206 16 C -0.049 4.049 17 C -0.045 4.045 18 C -0.113 4.113 19 C -0.120 4.120 20 C -0.026 4.026 21 C -0.015 4.015 22 C -0.107 4.107 23 O -0.228 6.228 24 C 0.101 3.899 25 O -0.231 6.231 26 H 0.114 0.886 27 H 0.035 0.965 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.118 0.882 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.096 0.904 38 H 0.066 0.934 39 H 0.154 0.846 40 H 0.149 0.851 41 H 0.150 0.850 42 H 0.099 0.901 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 10.666 -1.726 10.128 14.809 hybrid contribution 0.620 -1.447 -0.992 1.861 sum 11.286 -3.173 9.136 14.863 Atomic orbital electron populations 1.22289 0.95753 0.99173 1.04492 1.22945 0.97686 1.00928 1.00309 1.19710 0.96962 0.89797 0.85789 0.94672 1.20746 1.29403 1.09205 0.94990 0.90123 1.24731 0.94159 0.95538 0.97396 1.70016 1.25106 1.45574 1.11633 0.87883 0.82941 0.82697 0.80023 1.20703 1.16203 1.21659 1.62210 1.07727 1.51328 1.02391 1.22420 0.91042 0.97338 0.97141 1.21891 0.99887 1.01050 0.97815 1.21184 0.88815 0.97025 0.97924 1.19598 0.95689 0.95121 0.94058 1.20755 0.93032 0.97095 1.00409 1.19989 0.93464 1.00412 0.98117 1.19744 0.83468 0.99248 1.00136 1.19735 0.91985 0.96209 0.93555 1.20054 0.88841 1.02488 0.99327 1.87348 1.31275 1.43375 1.60815 1.25553 0.92673 0.86462 0.85175 1.87299 1.24921 1.76607 1.34290 0.88583 0.96530 0.92592 0.91331 0.94656 0.92732 0.88201 0.94919 0.93755 0.92393 0.93402 0.90391 0.93384 0.84622 0.85131 0.84995 0.90064 0.85577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.36 8.72 37.16 0.32 -3.03 16 2 C -0.18 -3.76 4.78 -26.73 -0.13 -3.89 16 3 C 0.18 4.10 1.74 -68.86 -0.12 3.98 16 4 H 0.04 0.83 5.30 -51.93 -0.28 0.56 16 5 C -0.51 -13.23 6.65 -34.44 -0.23 -13.45 16 6 H 0.08 2.33 7.19 -52.49 -0.38 1.95 16 7 C 0.08 2.29 3.75 -17.82 -0.07 2.23 16 8 N -0.89 -25.61 13.96 55.43 0.77 -24.84 16 9 Si 0.84 20.33 26.42 -169.99 -4.49 15.84 16 10 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.24 -5.33 4.55 56.52 0.26 -5.07 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 N -0.51 -9.85 4.40 -229.46 -1.01 -10.86 16 14 C 0.05 0.86 3.72 -3.82 -0.01 0.84 16 15 C -0.15 -2.19 10.03 37.16 0.37 -1.81 16 16 C 0.08 1.25 4.86 -4.98 -0.02 1.23 16 17 C -0.04 -0.70 5.20 -104.62 -0.54 -1.24 16 18 C -0.09 -1.31 9.67 -39.58 -0.38 -1.70 16 19 C -0.10 -1.40 10.06 -39.47 -0.40 -1.79 16 20 C 0.02 0.28 7.15 -39.08 -0.28 0.00 16 21 C 0.03 0.49 7.15 -39.08 -0.28 0.21 16 22 C -0.09 -1.51 8.22 -39.47 -0.32 -1.83 16 23 O -0.31 -4.98 11.40 -45.69 -0.52 -5.50 16 24 C 0.21 2.59 8.89 101.05 0.90 3.49 16 25 O -0.31 -4.54 11.40 -45.71 -0.52 -5.06 16 26 H 0.10 2.34 5.33 -51.93 -0.28 2.07 16 27 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 1.08 4.27 -51.93 -0.22 0.86 16 29 H 0.07 1.51 3.91 -51.93 -0.20 1.31 16 30 H 0.04 0.66 5.53 -51.93 -0.29 0.38 16 31 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.10 2.11 5.72 -51.93 -0.30 1.81 16 33 H 0.03 0.57 5.61 -51.93 -0.29 0.28 16 34 H 0.04 0.58 6.36 -51.93 -0.33 0.25 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 1.08 6.05 -51.93 -0.31 0.76 16 38 H 0.05 0.78 5.48 -51.93 -0.28 0.50 16 39 H 0.14 1.57 8.06 -52.48 -0.42 1.15 16 40 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 41 H 0.13 2.32 7.60 -52.49 -0.40 1.93 16 42 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.13 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 320.42 15.07 4.83 4.83 Total: -1.00 -29.46 320.42 -7.93 -37.39 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -5.80 Total: 4.97 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: -1.20 Total: -16.77 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: -0.24 Total: -35.69 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: -1.04 Total: -10.56 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.49 Total: 15.84 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.46 -7.93 -37.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177169.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.842 kcal (2) G-P(sol) polarization free energy of solvation -29.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds