Wall clock time and date at job start Tue Mar 31 2020 06:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46911 * 2 1 4 4 H 1.09003 * 109.47047 * 200.38588 * 3 2 1 5 5 C 1.50699 * 109.47201 * 320.38647 * 3 2 1 6 6 H 1.08001 * 119.99776 * 126.91661 * 5 3 2 7 7 C 1.37876 * 120.00193 * 306.91449 * 5 3 2 8 8 N 1.31509 * 120.00065 * 159.24374 * 7 5 3 9 9 Si 1.86797 * 119.99790 * 339.24401 * 7 5 3 10 10 H 1.48500 * 109.47226 * 274.80565 * 9 7 5 11 11 H 1.48500 * 109.47574 * 34.80642 * 9 7 5 12 12 H 1.48508 * 109.47209 * 154.80689 * 9 7 5 13 13 N 1.46908 * 109.47087 * 80.39005 * 3 2 1 14 14 C 1.46904 * 110.99443 * 297.66604 * 13 3 2 15 15 C 1.52999 * 109.46547 * 194.91063 * 14 13 3 16 16 C 1.46898 * 110.99990 * 61.62159 * 13 3 2 17 17 C 1.50700 * 109.47413 * 75.49715 * 16 13 3 18 18 C 1.38251 * 119.92688 * 93.71506 * 17 16 13 19 19 C 1.38232 * 120.14575 * 179.97438 * 18 17 16 20 20 C 1.38548 * 120.02659 * 0.02613 * 19 18 17 21 21 C 1.39267 * 119.82861 * 359.97438 * 20 19 18 22 22 C 1.38231 * 119.92693 * 273.44719 * 17 16 13 23 23 O 1.36500 * 108.64240 * 180.02562 * 21 20 19 24 24 C 1.43994 * 105.48124 * 342.71342 * 23 21 20 25 25 O 1.36505 * 131.53381 * 179.97438 * 20 19 18 26 26 H 1.08996 * 109.47530 * 52.74028 * 1 2 3 27 27 H 1.09001 * 109.47053 * 172.74365 * 1 2 3 28 28 H 1.09005 * 109.47159 * 292.73848 * 1 2 3 29 29 H 1.09000 * 109.47430 * 240.00079 * 2 1 3 30 30 H 1.08999 * 109.47566 * 119.99978 * 2 1 3 31 31 H 0.96998 * 119.99562 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.47023 * 314.91072 * 14 13 3 33 33 H 1.09006 * 109.46865 * 74.91243 * 14 13 3 34 34 H 1.09005 * 109.47105 * 304.64875 * 15 14 13 35 35 H 1.08993 * 109.47168 * 64.65373 * 15 14 13 36 36 H 1.09006 * 109.46960 * 184.65347 * 15 14 13 37 37 H 1.09002 * 109.46930 * 195.49881 * 16 13 3 38 38 H 1.09002 * 109.47385 * 315.49594 * 16 13 3 39 39 H 1.08004 * 119.92678 * 0.02562 * 18 17 16 40 40 H 1.07997 * 119.99285 * 180.02562 * 19 18 17 41 41 H 1.07999 * 119.99223 * 359.97438 * 22 17 16 42 42 H 1.08997 * 110.57609 * 268.56022 * 24 23 21 43 43 H 1.09002 * 110.56720 * 145.68840 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.0693 1.4640 -0.3580 5 6 1.1754 2.2809 -0.9059 6 1 0.7287 3.1916 -0.5350 7 6 0.9548 1.8855 -2.2082 8 7 -0.0827 2.3498 -2.8696 9 14 2.1298 0.6904 -3.0331 10 1 3.2749 1.4401 -3.6092 11 1 2.6302 -0.2837 -2.0302 12 1 1.4183 -0.0354 -4.1159 13 7 1.9851 1.9813 1.3656 14 6 0.6028 2.0192 1.8614 15 6 0.5311 2.9089 3.1041 16 6 2.8481 1.2105 2.2706 17 6 4.2893 1.5739 2.0214 18 6 4.8926 2.5608 2.7787 19 6 6.2144 2.8974 2.5543 20 6 6.9380 2.2460 1.5685 21 6 6.3302 1.2519 0.8057 22 6 5.0066 0.9160 1.0400 23 8 7.2422 0.7685 -0.0875 24 6 8.2890 1.7558 -0.1404 25 8 8.2306 2.3859 1.1528 26 1 -0.3634 0.6221 -0.8179 27 1 -0.3633 -1.0194 -0.1298 28 1 -0.3634 0.3972 0.9478 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 -0.2381 2.0713 -3.7856 32 1 -0.0498 2.4228 1.0873 33 1 0.2810 1.0098 2.1180 34 1 1.2446 2.5531 3.8473 35 1 0.7731 3.9357 2.8302 36 1 -0.4758 2.8715 3.5200 37 1 2.5887 1.4409 3.3040 38 1 2.7055 0.1452 2.0892 39 1 4.3302 3.0693 3.5478 40 1 6.6833 3.6684 3.1475 41 1 4.5342 0.1421 0.4531 42 1 8.0915 2.4817 -0.9290 43 1 9.2577 1.2792 -0.2911 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255177169.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:13 Heat of formation + Delta-G solvation = -19.844919 kcal Electronic energy + Delta-G solvation = -24502.715690 eV Core-core repulsion = 21128.699189 eV Total energy + Delta-G solvation = -3374.016501 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.09416 -40.33043 -38.47077 -37.25910 -35.13071 -33.15589 -32.63041 -31.32363 -30.39636 -28.67193 -26.99099 -25.87602 -25.38306 -23.87082 -22.99093 -22.23431 -20.75622 -18.87701 -18.55241 -18.40856 -18.13609 -17.43747 -17.07139 -16.03291 -15.94599 -15.71069 -15.46556 -15.22039 -14.92434 -14.67876 -14.61675 -14.22511 -13.98893 -13.95134 -13.63623 -13.59203 -13.20696 -12.83744 -12.71452 -12.40346 -12.36442 -12.10761 -11.92672 -11.90957 -11.74442 -11.54919 -11.28721 -11.21025 -10.72145 -10.18333 -9.77916 -8.99610 -8.70767 -8.25866 -6.11854 0.18143 0.28146 1.28289 1.38776 1.39152 1.80145 2.37396 2.53967 2.62680 3.09760 3.50132 3.51757 3.82309 3.91635 4.05633 4.11739 4.27077 4.30274 4.36020 4.40610 4.45003 4.53387 4.61988 4.69247 4.75603 4.78053 4.89972 5.07507 5.11302 5.16002 5.17104 5.23477 5.29503 5.37416 5.42212 5.49144 5.54894 5.59240 5.67163 5.70102 5.93668 6.16220 6.18597 6.54193 6.82571 6.89058 7.45769 8.89951 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014676 B = 0.006398 C = 0.004956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.384977 B = 4375.437322 C = 5648.027913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.175 4.175 3 C 0.192 3.808 4 H 0.025 0.975 5 C -0.494 4.494 6 H 0.041 0.959 7 C 0.041 3.959 8 N -0.930 5.930 9 Si 0.879 3.121 10 H -0.289 1.289 11 H -0.206 1.206 12 H -0.294 1.294 13 N -0.524 5.524 14 C 0.050 3.950 15 C -0.139 4.139 16 C 0.082 3.918 17 C -0.058 4.058 18 C -0.087 4.087 19 C -0.098 4.098 20 C 0.009 3.991 21 C 0.006 3.994 22 C -0.108 4.108 23 O -0.333 6.333 24 C 0.205 3.795 25 O -0.321 6.321 26 H 0.056 0.944 27 H 0.034 0.966 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.261 0.739 32 H 0.058 0.942 33 H 0.042 0.958 34 H 0.069 0.931 35 H 0.046 0.954 36 H 0.064 0.936 37 H 0.108 0.892 38 H 0.048 0.952 39 H 0.166 0.834 40 H 0.161 0.839 41 H 0.118 0.882 42 H 0.092 0.908 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.009 -2.713 12.872 17.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.213 4.213 3 C 0.084 3.916 4 H 0.043 0.957 5 C -0.532 4.532 6 H 0.060 0.940 7 C -0.157 4.157 8 N -0.570 5.570 9 Si 0.706 3.294 10 H -0.216 1.216 11 H -0.130 1.130 12 H -0.221 1.221 13 N -0.248 5.248 14 C -0.077 4.077 15 C -0.197 4.197 16 C -0.045 4.045 17 C -0.059 4.059 18 C -0.105 4.105 19 C -0.116 4.116 20 C -0.035 4.035 21 C -0.038 4.038 22 C -0.127 4.127 23 O -0.250 6.250 24 C 0.094 3.906 25 O -0.238 6.238 26 H 0.075 0.925 27 H 0.053 0.947 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.083 0.917 37 H 0.126 0.874 38 H 0.066 0.934 39 H 0.183 0.817 40 H 0.178 0.822 41 H 0.136 0.864 42 H 0.110 0.890 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 12.275 -2.326 12.660 17.787 hybrid contribution 0.146 -1.175 -1.720 2.088 sum 12.421 -3.501 10.940 16.918 Atomic orbital electron populations 1.22187 0.95820 0.99525 1.03705 1.22835 0.97494 0.99926 1.01045 1.19448 0.95183 0.89935 0.87076 0.95719 1.20901 1.28713 1.08056 0.95508 0.94040 1.25293 0.95082 0.97316 0.98043 1.70128 1.27063 1.47957 1.11891 0.87181 0.80811 0.81718 0.79640 1.21608 1.13005 1.22075 1.62115 1.08859 1.52181 1.01612 1.22321 0.89724 0.98324 0.97333 1.21804 1.01770 0.99561 0.96545 1.21250 0.88191 0.96494 0.98529 1.19692 0.95625 0.96009 0.94529 1.21098 0.93202 0.96002 1.00194 1.20393 0.93379 1.00379 0.97475 1.20053 0.83925 0.99131 1.00420 1.19939 0.92291 0.97099 0.94430 1.20104 0.89431 1.02996 1.00156 1.87304 1.31984 1.44734 1.60937 1.26045 0.93504 0.86511 0.84561 1.87274 1.24378 1.76847 1.35253 0.92476 0.94713 0.91210 0.92423 0.91880 0.92993 0.92354 0.94003 0.91219 0.93462 0.91690 0.87358 0.93394 0.81687 0.82182 0.86379 0.89014 0.81737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.39 8.72 71.98 0.63 -5.77 16 2 C -0.17 -7.05 4.78 30.59 0.15 -6.90 16 3 C 0.19 8.45 1.74 44.17 0.08 8.53 16 4 H 0.03 1.17 5.30 -2.39 -0.01 1.15 16 5 C -0.49 -26.61 6.65 25.60 0.17 -26.44 16 6 H 0.04 2.52 7.19 -2.91 -0.02 2.50 16 7 C 0.04 2.31 3.75 84.66 0.32 2.63 16 8 N -0.93 -56.08 13.96 21.45 0.30 -55.78 16 9 Si 0.88 42.48 26.42 68.60 1.81 44.29 16 10 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16 11 H -0.21 -8.93 4.55 99.48 0.45 -8.47 16 12 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 13 N -0.52 -19.38 4.40 -879.89 -3.87 -23.25 16 14 C 0.05 1.74 3.72 86.30 0.32 2.06 16 15 C -0.14 -3.70 10.03 71.98 0.72 -2.98 16 16 C 0.08 2.40 4.86 85.56 0.42 2.81 16 17 C -0.06 -1.71 5.20 -19.86 -0.10 -1.81 16 18 C -0.09 -2.13 9.67 22.27 0.22 -1.91 16 19 C -0.10 -2.40 10.06 22.34 0.22 -2.18 16 20 C 0.01 0.26 7.15 22.59 0.16 0.42 16 21 C 0.01 0.21 7.15 22.59 0.16 0.37 16 22 C -0.11 -3.60 8.22 22.34 0.18 -3.41 16 23 O -0.33 -10.37 11.40 -76.05 -0.87 -11.24 16 24 C 0.20 4.61 8.89 113.37 1.01 5.61 16 25 O -0.32 -8.65 11.40 -76.11 -0.87 -9.51 16 26 H 0.06 2.83 5.33 -2.39 -0.01 2.81 16 27 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.07 2.63 4.27 -2.38 -0.01 2.62 16 29 H 0.06 2.45 3.91 -2.39 -0.01 2.44 16 30 H 0.06 2.21 5.53 -2.39 -0.01 2.20 16 31 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 32 H 0.06 2.52 5.72 -2.39 -0.01 2.50 16 33 H 0.04 1.37 5.61 -2.38 -0.01 1.35 16 34 H 0.07 1.50 6.36 -2.38 -0.02 1.49 16 35 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 37 H 0.11 2.48 6.05 -2.39 -0.01 2.47 16 38 H 0.05 1.41 5.48 -2.39 -0.01 1.40 16 39 H 0.17 3.02 8.06 -2.91 -0.02 3.00 16 40 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 41 H 0.12 4.14 7.60 -2.91 -0.02 4.12 16 42 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.17 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -66.69 320.42 1.94 -64.76 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 0.78 Total: 19.70 kcal Atomic # 6 Polarization: -33.61 SS G_CDS: 4.65 Total: -28.96 kcal Atomic # 7 Polarization: -75.46 SS G_CDS: -3.57 Total: -79.03 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -1.74 Total: -20.75 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 1.81 Total: 44.29 kcal Total: -66.69 1.94 -64.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177169.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.912 kcal (2) G-P(sol) polarization free energy of solvation -66.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds