Wall clock time and date at job start Tue Mar 31 2020 06:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46905 * 109.47110 * 305.51715 * 3 2 1 5 5 C 1.46846 * 110.99970 * 169.99970 * 4 3 2 6 6 C 1.53033 * 109.52391 * 185.83962 * 5 4 3 7 7 C 1.53122 * 109.28012 * 300.82036 * 6 5 4 8 8 C 1.50701 * 109.52540 * 177.55540 * 7 6 5 9 9 O 1.20822 * 119.99994 * 352.86011 * 8 7 6 10 10 O 1.34228 * 119.99789 * 172.85401 * 8 7 6 11 11 C 1.45201 * 116.99770 * 185.18302 * 10 8 7 12 12 C 1.53001 * 109.47188 * 184.82330 * 11 10 8 13 13 C 1.50699 * 115.54647 * 294.87154 * 12 11 10 14 14 H 1.08010 * 119.99921 * 95.58987 * 13 12 11 15 15 C 1.37876 * 120.00310 * 275.58399 * 13 12 11 16 16 N 1.31514 * 119.99673 * 5.34460 * 15 13 12 17 17 Si 1.86796 * 120.00109 * 185.34022 * 15 13 12 18 18 H 1.48506 * 109.47025 * 60.00360 * 17 15 13 19 19 H 1.48503 * 109.47171 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47365 * 300.00120 * 17 15 13 21 21 C 1.53001 * 117.49971 * 149.20680 * 12 11 10 22 22 C 1.52996 * 117.49895 * 80.54209 * 12 11 10 23 23 C 1.53124 * 109.15804 * 57.65539 * 7 6 5 24 24 C 1.46840 * 110.99877 * 294.21112 * 4 3 2 25 25 H 4.40882 * 5.52177 * 179.97438 * 4 1 2 26 26 H 1.09000 * 109.47610 * 185.52014 * 3 2 1 27 27 H 1.08996 * 109.47650 * 65.51780 * 3 2 1 28 28 H 1.09005 * 109.45839 * 65.82607 * 5 4 3 29 29 H 1.08991 * 109.45785 * 305.85157 * 5 4 3 30 30 H 1.09002 * 109.50673 * 180.88163 * 6 5 4 31 31 H 1.08997 * 109.50607 * 60.76429 * 6 5 4 32 32 H 1.08998 * 109.52486 * 297.69113 * 7 6 5 33 33 H 1.09001 * 109.47004 * 304.82001 * 11 10 8 34 34 H 1.08993 * 109.47041 * 64.82096 * 11 10 8 35 35 H 0.97002 * 119.99880 * 184.99571 * 16 15 13 36 36 H 1.08998 * 117.50001 * 359.97438 * 21 12 11 37 37 H 1.09001 * 117.49754 * 145.02289 * 21 12 11 38 38 H 1.09006 * 117.49641 * 214.97817 * 22 12 11 39 39 H 1.08999 * 117.50448 * 359.97438 * 22 12 11 40 40 H 1.09004 * 109.50396 * 62.28386 * 23 7 6 41 41 H 1.09000 * 109.50201 * 182.40852 * 23 7 6 42 42 H 1.09002 * 109.46424 * 294.17533 * 24 4 3 43 43 H 1.09002 * 109.46637 * 54.15888 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1360 -0.8038 1.1273 5 6 4.5844 -1.0237 1.0266 6 6 5.0343 -1.9819 2.1317 7 6 4.6842 -1.3807 3.4957 8 6 5.0705 -2.3466 4.5860 9 8 5.4537 -3.4567 4.3018 10 8 4.9891 -1.9737 5.8729 11 6 5.4857 -2.9117 6.8637 12 6 5.2016 -2.3701 8.2662 13 6 5.9269 -1.1007 8.6319 14 1 5.4390 -0.1451 8.5078 15 6 7.2131 -1.1592 9.1249 16 7 7.8454 -2.3111 9.1777 17 14 8.0578 0.3979 9.7178 18 1 7.2741 0.9934 10.8298 19 1 9.4245 0.0683 10.1959 20 1 8.1464 1.3699 8.5986 21 6 4.9555 -3.3892 9.3806 22 6 3.7912 -2.5643 8.8262 23 6 3.1772 -1.1166 3.5565 24 6 2.7811 -0.1833 2.4100 25 1 -1.0498 0.0000 0.0003 26 1 3.0090 1.0237 0.0989 27 1 3.0096 -0.4250 -0.9352 28 1 5.1047 -0.0722 1.1369 29 1 4.8193 -1.4554 0.0537 30 1 6.1119 -2.1327 2.0663 31 1 4.5248 -2.9382 2.0139 32 1 5.2249 -0.4439 3.6305 33 1 4.9862 -3.8722 6.7371 34 1 6.5602 -3.0412 6.7350 35 1 8.7214 -2.3651 9.5907 36 1 4.9955 -4.4454 9.1145 37 1 5.3177 -3.1412 10.3783 38 1 3.3879 -1.7741 9.4595 39 1 3.0654 -3.0775 8.1954 40 1 2.6383 -2.0593 3.4611 41 1 2.9279 -0.6489 4.5091 42 1 3.3099 0.7642 2.5138 43 1 1.7063 -0.0048 2.4421 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261584687.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:57 Heat of formation + Delta-G solvation = -10.361417 kcal Electronic energy + Delta-G solvation = -23131.772135 eV Core-core repulsion = 19758.166870 eV Total energy + Delta-G solvation = -3373.605265 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.21642 -38.80344 -36.79716 -35.26484 -34.66374 -32.35974 -31.96812 -30.95285 -27.97753 -26.66288 -25.28985 -23.86710 -23.29456 -21.23953 -20.74895 -19.50067 -19.24287 -18.36548 -17.01271 -16.63264 -16.24799 -15.58699 -15.32588 -15.20999 -14.95724 -14.61040 -14.02257 -13.86996 -13.48171 -13.38703 -13.05089 -12.92558 -12.25574 -12.22067 -11.94595 -11.64914 -11.42693 -11.26011 -11.00033 -10.89319 -10.84051 -10.66157 -10.56016 -10.51617 -10.33293 -10.28989 -9.89749 -9.83637 -9.49530 -8.82346 -8.61088 -8.47242 -8.21941 -6.07442 -4.13515 2.47227 2.63446 2.77110 3.28987 3.34306 3.35153 3.36855 3.80103 4.16685 4.38426 4.60048 4.70447 4.88295 5.00992 5.11247 5.14935 5.21118 5.23135 5.28138 5.40320 5.44302 5.47949 5.68331 5.71207 5.72908 5.84497 5.97433 5.99334 6.14803 6.25238 6.29742 6.33731 6.54263 6.67117 6.73570 6.74983 6.82620 7.02483 7.26286 7.36386 7.40827 7.47815 7.85334 8.35501 8.47735 8.88115 9.52522 11.01792 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020787 B = 0.003393 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.700604 B = 8249.575322 C = 8426.976990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.179 4.179 3 C 0.162 3.838 4 N -0.538 5.538 5 C 0.059 3.941 6 C -0.100 4.100 7 C -0.083 4.083 8 C 0.458 3.542 9 O -0.523 6.523 10 O -0.336 6.336 11 C 0.115 3.885 12 C 0.038 3.962 13 C -0.488 4.488 14 H 0.062 0.938 15 C 0.069 3.931 16 N -0.882 5.882 17 Si 0.892 3.108 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.146 4.146 22 C -0.205 4.205 23 C -0.106 4.106 24 C 0.058 3.942 25 H 0.217 0.783 26 H 0.058 0.942 27 H 0.098 0.902 28 H 0.039 0.961 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.103 0.897 33 H 0.039 0.961 34 H 0.075 0.925 35 H 0.262 0.738 36 H 0.065 0.935 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.040 0.960 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.300 4.409 -16.155 19.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.180 4.180 3 C 0.035 3.965 4 N -0.263 5.263 5 C -0.069 4.069 6 C -0.138 4.138 7 C -0.102 4.102 8 C 0.301 3.699 9 O -0.413 6.413 10 O -0.251 6.251 11 C 0.042 3.958 12 C 0.038 3.962 13 C -0.526 4.526 14 H 0.080 0.920 15 C -0.134 4.134 16 N -0.519 5.519 17 Si 0.719 3.281 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.201 1.201 21 C -0.184 4.184 22 C -0.242 4.242 23 C -0.144 4.144 24 C -0.070 4.070 25 H 0.233 0.767 26 H 0.076 0.924 27 H 0.116 0.884 28 H 0.058 0.942 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.121 0.879 33 H 0.057 0.943 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.105 0.895 42 H 0.058 0.942 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.172 3.532 -16.196 18.945 hybrid contribution 0.846 1.334 0.506 1.659 sum -8.326 4.866 -15.689 18.416 Atomic orbital electron populations 1.24895 0.95903 1.00924 0.99994 1.22833 0.94195 1.00191 1.00733 1.18984 0.85231 0.96820 0.95434 1.61915 1.14381 1.48221 1.01807 1.22119 0.86286 0.98678 0.99798 1.21484 1.01871 0.99474 0.90995 1.21075 0.98641 0.98508 0.91965 1.23465 0.74583 0.87278 0.84535 1.90599 1.44065 1.22405 1.84221 1.86523 1.74284 1.49191 1.15148 1.22886 0.98786 0.88089 0.86021 1.18766 0.93018 0.96844 0.87587 1.20376 0.97862 0.90943 1.43399 0.91950 1.25002 0.96726 0.96187 0.95526 1.69991 1.14371 1.24517 1.43041 0.86666 0.78537 0.83588 0.79288 1.20164 1.21291 1.20125 1.22549 1.01418 0.94682 0.99721 1.22998 0.92370 1.03476 1.05385 1.21560 0.93045 1.01089 0.98710 1.22130 1.01242 0.95439 0.88144 0.76656 0.92380 0.88437 0.94237 0.89972 0.90437 0.89832 0.87915 0.94281 0.90715 0.92838 0.91646 0.89451 0.90079 0.91563 0.90545 0.89544 0.94165 0.90148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.75 19.25 29.55 0.57 -1.18 16 2 C -0.18 -1.77 12.34 -37.12 -0.46 -2.22 16 3 C 0.16 1.39 5.46 -6.61 -0.04 1.35 16 4 N -0.54 -5.54 4.63 -238.18 -1.10 -6.65 16 5 C 0.06 0.56 5.46 -3.84 -0.02 0.54 16 6 C -0.10 -1.23 4.74 -26.65 -0.13 -1.36 16 7 C -0.08 -1.16 2.70 -91.64 -0.25 -1.41 16 8 C 0.46 8.77 7.20 36.01 0.26 9.03 16 9 O -0.52 -11.20 15.60 -18.75 -0.29 -11.49 16 10 O -0.34 -7.38 10.16 -39.25 -0.40 -7.78 16 11 C 0.12 2.77 5.38 37.16 0.20 2.97 16 12 C 0.04 0.95 1.60 -155.66 -0.25 0.71 16 13 C -0.49 -13.26 8.77 -34.44 -0.30 -13.56 16 14 H 0.06 1.69 7.82 -52.48 -0.41 1.28 16 15 C 0.07 1.86 5.40 -17.82 -0.10 1.77 16 16 N -0.88 -24.85 12.93 55.43 0.72 -24.13 16 17 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 C -0.15 -3.41 9.44 -26.69 -0.25 -3.66 16 22 C -0.21 -4.48 9.96 -26.69 -0.27 -4.75 16 23 C -0.11 -1.34 5.36 -26.64 -0.14 -1.48 16 24 C 0.06 0.62 5.30 -3.83 -0.02 0.60 16 25 H 0.22 1.19 7.80 -54.10 -0.42 0.77 16 26 H 0.06 0.44 8.12 -51.93 -0.42 0.02 16 27 H 0.10 0.69 7.99 -51.93 -0.41 0.27 16 28 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.65 8.01 -51.93 -0.42 0.24 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.08 1.14 7.95 -51.93 -0.41 0.73 16 32 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.04 0.90 7.92 -51.93 -0.41 0.49 16 34 H 0.07 1.97 8.14 -51.93 -0.42 1.55 16 35 H 0.26 7.07 8.32 -40.82 -0.34 6.73 16 36 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 37 H 0.09 2.13 8.14 -51.93 -0.42 1.70 16 38 H 0.08 1.73 8.14 -51.93 -0.42 1.30 16 39 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 0.85 7.11 -51.93 -0.37 0.48 16 LS Contribution 363.14 15.07 5.47 5.47 Total: -1.00 -30.66 363.14 -8.88 -39.54 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -7.06 Total: 1.80 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: -1.19 Total: -12.67 kcal Atomic # 7 Polarization: -30.39 SS G_CDS: -0.39 Total: -30.78 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.69 Total: -19.27 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.66 -8.88 -39.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261584687.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.175 kcal (2) G-P(sol) polarization free energy of solvation -30.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds