Wall clock time and date at job start Tue Mar 31 2020 06:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46905 * 109.47110 * 305.51715 * 3 2 1 5 5 C 1.46846 * 110.99970 * 169.99970 * 4 3 2 6 6 C 1.53033 * 109.52391 * 185.83962 * 5 4 3 7 7 C 1.53122 * 109.28012 * 300.82036 * 6 5 4 8 8 C 1.50701 * 109.52540 * 177.55540 * 7 6 5 9 9 O 1.20822 * 119.99994 * 352.86011 * 8 7 6 10 10 O 1.34228 * 119.99789 * 172.85401 * 8 7 6 11 11 C 1.45201 * 116.99770 * 185.18302 * 10 8 7 12 12 C 1.53001 * 109.47188 * 184.82330 * 11 10 8 13 13 C 1.50699 * 115.54647 * 294.87154 * 12 11 10 14 14 H 1.08010 * 119.99921 * 95.58987 * 13 12 11 15 15 C 1.37876 * 120.00310 * 275.58399 * 13 12 11 16 16 N 1.31514 * 119.99673 * 5.34460 * 15 13 12 17 17 Si 1.86796 * 120.00109 * 185.34022 * 15 13 12 18 18 H 1.48506 * 109.47025 * 60.00360 * 17 15 13 19 19 H 1.48503 * 109.47171 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47365 * 300.00120 * 17 15 13 21 21 C 1.53001 * 117.49971 * 149.20680 * 12 11 10 22 22 C 1.52996 * 117.49895 * 80.54209 * 12 11 10 23 23 C 1.53124 * 109.15804 * 57.65539 * 7 6 5 24 24 C 1.46840 * 110.99877 * 294.21112 * 4 3 2 25 25 H 4.40882 * 5.52177 * 179.97438 * 4 1 2 26 26 H 1.09000 * 109.47610 * 185.52014 * 3 2 1 27 27 H 1.08996 * 109.47650 * 65.51780 * 3 2 1 28 28 H 1.09005 * 109.45839 * 65.82607 * 5 4 3 29 29 H 1.08991 * 109.45785 * 305.85157 * 5 4 3 30 30 H 1.09002 * 109.50673 * 180.88163 * 6 5 4 31 31 H 1.08997 * 109.50607 * 60.76429 * 6 5 4 32 32 H 1.08998 * 109.52486 * 297.69113 * 7 6 5 33 33 H 1.09001 * 109.47004 * 304.82001 * 11 10 8 34 34 H 1.08993 * 109.47041 * 64.82096 * 11 10 8 35 35 H 0.97002 * 119.99880 * 184.99571 * 16 15 13 36 36 H 1.08998 * 117.50001 * 359.97438 * 21 12 11 37 37 H 1.09001 * 117.49754 * 145.02289 * 21 12 11 38 38 H 1.09006 * 117.49641 * 214.97817 * 22 12 11 39 39 H 1.08999 * 117.50448 * 359.97438 * 22 12 11 40 40 H 1.09004 * 109.50396 * 62.28386 * 23 7 6 41 41 H 1.09000 * 109.50201 * 182.40852 * 23 7 6 42 42 H 1.09002 * 109.46424 * 294.17533 * 24 4 3 43 43 H 1.09002 * 109.46637 * 54.15888 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1360 -0.8038 1.1273 5 6 4.5844 -1.0237 1.0266 6 6 5.0343 -1.9819 2.1317 7 6 4.6842 -1.3807 3.4957 8 6 5.0705 -2.3466 4.5860 9 8 5.4537 -3.4567 4.3018 10 8 4.9891 -1.9737 5.8729 11 6 5.4857 -2.9117 6.8637 12 6 5.2016 -2.3701 8.2662 13 6 5.9269 -1.1007 8.6319 14 1 5.4390 -0.1451 8.5078 15 6 7.2131 -1.1592 9.1249 16 7 7.8454 -2.3111 9.1777 17 14 8.0578 0.3979 9.7178 18 1 7.2741 0.9934 10.8298 19 1 9.4245 0.0683 10.1959 20 1 8.1464 1.3699 8.5986 21 6 4.9555 -3.3892 9.3806 22 6 3.7912 -2.5643 8.8262 23 6 3.1772 -1.1166 3.5565 24 6 2.7811 -0.1833 2.4100 25 1 -1.0498 0.0000 0.0003 26 1 3.0090 1.0237 0.0989 27 1 3.0096 -0.4250 -0.9352 28 1 5.1047 -0.0722 1.1369 29 1 4.8193 -1.4554 0.0537 30 1 6.1119 -2.1327 2.0663 31 1 4.5248 -2.9382 2.0139 32 1 5.2249 -0.4439 3.6305 33 1 4.9862 -3.8722 6.7371 34 1 6.5602 -3.0412 6.7350 35 1 8.7214 -2.3651 9.5907 36 1 4.9955 -4.4454 9.1145 37 1 5.3177 -3.1412 10.3783 38 1 3.3879 -1.7741 9.4595 39 1 3.0654 -3.0775 8.1954 40 1 2.6383 -2.0593 3.4611 41 1 2.9279 -0.6489 4.5091 42 1 3.3099 0.7642 2.5138 43 1 1.7063 -0.0048 2.4421 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261584687.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:56 Heat of formation + Delta-G solvation = -26.771785 kcal Electronic energy + Delta-G solvation = -23132.483742 eV Core-core repulsion = 19758.166870 eV Total energy + Delta-G solvation = -3374.316872 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.66768 -39.87739 -38.56478 -36.97834 -35.59661 -34.03196 -33.15955 -31.84564 -29.23933 -28.11492 -27.24065 -24.94749 -24.19496 -23.01820 -22.03383 -21.20635 -20.62694 -19.00662 -18.57054 -18.37583 -17.50788 -17.21462 -16.59181 -16.54162 -16.12952 -15.73342 -15.65665 -14.97526 -14.72606 -14.67299 -14.22258 -13.84147 -13.82338 -13.62464 -13.52799 -13.02232 -12.97238 -12.80143 -12.53523 -12.40163 -12.20190 -12.10957 -11.87244 -11.68315 -11.66349 -11.51901 -11.33607 -11.15646 -11.01405 -10.77483 -10.49652 -10.10465 -9.33302 -8.13921 -6.26258 1.21758 1.43245 1.43751 1.51763 1.79143 1.82121 1.97779 2.42572 3.07920 3.14503 3.37414 3.53888 3.58904 3.71861 3.82477 4.12378 4.14614 4.17073 4.32551 4.36399 4.37328 4.45874 4.52300 4.57231 4.64263 4.66714 4.72846 4.81914 4.87208 4.92117 4.94315 5.03448 5.12047 5.16049 5.17483 5.29059 5.43005 5.56114 5.70907 5.74788 6.01883 6.07277 6.34491 6.76471 6.79150 6.83050 7.42891 8.94805 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020787 B = 0.003393 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.700604 B = 8249.575322 C = 8426.976990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.211 4.211 3 C 0.162 3.838 4 N -0.553 5.553 5 C 0.065 3.935 6 C -0.096 4.096 7 C -0.075 4.075 8 C 0.453 3.547 9 O -0.549 6.549 10 O -0.346 6.346 11 C 0.128 3.872 12 C 0.006 3.994 13 C -0.504 4.504 14 H 0.056 0.944 15 C 0.023 3.977 16 N -0.911 5.911 17 Si 0.953 3.047 18 H -0.268 1.268 19 H -0.286 1.286 20 H -0.271 1.271 21 C -0.148 4.148 22 C -0.178 4.178 23 C -0.101 4.101 24 C 0.066 3.934 25 H 0.240 0.760 26 H 0.072 0.928 27 H 0.113 0.887 28 H 0.055 0.945 29 H 0.102 0.898 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.117 0.883 33 H 0.043 0.957 34 H 0.040 0.960 35 H 0.261 0.739 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.063 0.937 41 H 0.082 0.918 42 H 0.052 0.948 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.235 5.989 -17.422 21.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.212 4.212 3 C 0.036 3.964 4 N -0.278 5.278 5 C -0.062 4.062 6 C -0.134 4.134 7 C -0.095 4.095 8 C 0.298 3.702 9 O -0.441 6.441 10 O -0.262 6.262 11 C 0.054 3.946 12 C 0.006 3.994 13 C -0.541 4.541 14 H 0.075 0.925 15 C -0.177 4.177 16 N -0.549 5.549 17 Si 0.778 3.222 18 H -0.193 1.193 19 H -0.211 1.211 20 H -0.196 1.196 21 C -0.186 4.186 22 C -0.215 4.215 23 C -0.139 4.139 24 C -0.062 4.062 25 H 0.257 0.743 26 H 0.089 0.911 27 H 0.131 0.869 28 H 0.073 0.927 29 H 0.120 0.880 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.135 0.865 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.082 0.918 41 H 0.100 0.900 42 H 0.070 0.930 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.124 5.123 -17.477 20.837 hybrid contribution 1.081 0.800 0.850 1.591 sum -9.043 5.923 -16.627 19.832 Atomic orbital electron populations 1.25657 0.96869 1.00088 0.99059 1.23350 0.95128 1.01055 1.01648 1.19081 0.84714 0.97391 0.95213 1.61860 1.14798 1.49060 1.02089 1.22089 0.86061 0.98653 0.99368 1.21473 1.01664 0.99431 0.90876 1.21258 0.99838 0.97635 0.90726 1.24565 0.73439 0.87890 0.84292 1.90579 1.45256 1.23922 1.84293 1.86536 1.74479 1.48886 1.16253 1.22486 0.96721 0.88728 0.86617 1.18864 0.95420 0.96906 0.88224 1.20638 0.98397 0.91615 1.43465 0.92537 1.25728 0.97316 0.98986 0.95707 1.70104 1.14608 1.26392 1.43791 0.85698 0.77443 0.80093 0.78970 1.19345 1.21133 1.19606 1.22490 1.02411 0.95160 0.98501 1.23004 0.91381 1.02785 1.04319 1.21515 0.91562 1.01064 0.99712 1.22023 1.01426 0.95122 0.87632 0.74313 0.91061 0.86905 0.92695 0.87963 0.90611 0.91618 0.86482 0.93837 0.94169 0.92961 0.90606 0.91016 0.89427 0.89366 0.91772 0.89973 0.93029 0.90029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.10 19.25 74.32 1.43 -1.67 16 2 C -0.21 -3.74 12.34 31.12 0.38 -3.36 16 3 C 0.16 2.36 5.46 84.50 0.46 2.82 16 4 N -0.55 -10.11 4.63 -907.48 -4.21 -14.32 16 5 C 0.07 1.08 5.46 86.32 0.47 1.55 16 6 C -0.10 -2.26 4.74 30.65 0.15 -2.12 16 7 C -0.08 -2.06 2.70 -11.46 -0.03 -2.10 16 8 C 0.45 17.52 7.20 71.24 0.51 18.03 16 9 O -0.55 -24.05 15.60 21.98 0.34 -23.70 16 10 O -0.35 -15.37 10.16 -51.40 -0.52 -15.89 16 11 C 0.13 6.29 5.38 71.98 0.39 6.68 16 12 C 0.01 0.32 1.60 -52.93 -0.08 0.23 16 13 C -0.50 -27.54 8.77 25.60 0.22 -27.31 16 14 H 0.06 3.07 7.82 -2.91 -0.02 3.05 16 15 C 0.02 1.24 5.40 84.65 0.46 1.70 16 16 N -0.91 -52.19 12.93 21.45 0.28 -51.91 16 17 Si 0.95 42.96 29.54 68.60 2.03 44.99 16 18 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 19 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 21 C -0.15 -6.91 9.44 30.62 0.29 -6.62 16 22 C -0.18 -7.58 9.96 30.62 0.30 -7.27 16 23 C -0.10 -2.44 5.36 30.65 0.16 -2.27 16 24 C 0.07 1.27 5.30 86.33 0.46 1.72 16 25 H 0.24 2.07 7.80 -4.43 -0.03 2.04 16 26 H 0.07 0.85 8.12 -2.39 -0.02 0.83 16 27 H 0.11 1.26 7.99 -2.39 -0.02 1.24 16 28 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 29 H 0.10 1.31 8.01 -2.39 -0.02 1.29 16 30 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.07 1.78 7.95 -2.39 -0.02 1.76 16 32 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 33 H 0.04 2.04 7.92 -2.39 -0.02 2.02 16 34 H 0.04 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.26 14.33 8.32 -92.71 -0.77 13.56 16 36 H 0.08 3.31 8.14 -2.39 -0.02 3.30 16 37 H 0.07 3.53 8.14 -2.39 -0.02 3.51 16 38 H 0.09 3.60 8.14 -2.38 -0.02 3.58 16 39 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 40 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.08 1.58 7.11 -2.39 -0.02 1.56 16 Total: -1.00 -66.26 363.14 4.46 -61.79 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 0.97 Total: 19.03 kcal Atomic # 6 Polarization: -25.57 SS G_CDS: 5.57 Total: -19.99 kcal Atomic # 7 Polarization: -62.30 SS G_CDS: -3.93 Total: -66.23 kcal Atomic # 8 Polarization: -39.42 SS G_CDS: -0.18 Total: -39.60 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -66.26 4.46 -61.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261584687.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.023 kcal (2) G-P(sol) polarization free energy of solvation -66.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds