Wall clock time and date at job start Tue Mar 31 2020 06:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 N 1.41607 * 114.00136 * 2 1 4 4 C 1.34775 * 119.99596 * 90.00343 * 3 2 1 5 5 O 1.21280 * 120.00090 * 180.02562 * 4 3 2 6 6 C 1.50707 * 120.00290 * 359.97438 * 4 3 2 7 7 C 1.52998 * 109.47074 * 180.02562 * 6 4 3 8 8 H 1.09006 * 109.47228 * 304.99961 * 7 6 4 9 9 C 1.50696 * 109.47262 * 64.99736 * 7 6 4 10 10 H 1.08005 * 120.00129 * 234.67449 * 9 7 6 11 11 C 1.37877 * 120.00082 * 54.67803 * 9 7 6 12 12 N 1.31521 * 120.00059 * 4.89162 * 11 9 7 13 13 Si 1.86805 * 120.00336 * 184.88695 * 11 9 7 14 14 H 1.48504 * 109.46611 * 90.00235 * 13 11 9 15 15 H 1.48497 * 109.47335 * 209.99927 * 13 11 9 16 16 H 1.48496 * 109.46969 * 330.00325 * 13 11 9 17 17 C 1.50696 * 109.46967 * 185.00021 * 7 6 4 18 18 C 1.38239 * 120.00187 * 151.48635 * 17 7 6 19 19 C 1.38228 * 120.00106 * 179.79141 * 18 17 7 20 20 C 1.38234 * 119.99857 * 0.43242 * 19 18 17 21 21 C 1.38227 * 120.00171 * 359.81703 * 20 19 18 22 22 C 1.38234 * 120.00163 * 359.97438 * 21 20 19 23 23 C 1.46494 * 119.99879 * 270.27755 * 3 2 1 24 24 C 1.52996 * 109.46896 * 119.72878 * 23 3 2 25 25 C 1.53004 * 109.46899 * 239.72129 * 23 3 2 26 26 H 1.09007 * 109.47198 * 59.99670 * 1 2 3 27 27 H 1.08993 * 109.47266 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47236 * 299.99946 * 1 2 3 29 29 H 1.09005 * 109.46865 * 300.00002 * 6 4 3 30 30 H 1.08998 * 109.46651 * 60.00093 * 6 4 3 31 31 H 0.96994 * 120.00348 * 179.97438 * 12 11 9 32 32 H 1.08008 * 119.99451 * 359.97438 * 18 17 7 33 33 H 1.08005 * 120.00325 * 180.27268 * 19 18 17 34 34 H 1.08010 * 119.99711 * 179.83732 * 20 19 18 35 35 H 1.08002 * 120.00305 * 179.97438 * 21 20 19 36 36 H 1.07997 * 120.00387 * 180.02562 * 22 21 20 37 37 H 1.08993 * 109.47757 * 359.72232 * 23 3 2 38 38 H 1.08997 * 109.47718 * 59.99601 * 24 23 3 39 39 H 1.09010 * 109.47346 * 179.97438 * 24 23 3 40 40 H 1.09004 * 109.46973 * 299.99335 * 24 23 3 41 41 H 1.09001 * 109.47138 * 179.97438 * 25 23 3 42 42 H 1.08998 * 109.47669 * 300.00373 * 25 23 3 43 43 H 1.09005 * 109.47151 * 60.00313 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.2791 1.9091 1.1672 5 8 2.7720 3.0173 1.1673 6 6 1.9721 1.2209 2.4724 7 6 2.3761 2.1294 3.6353 8 1 3.4235 2.4119 3.5288 9 6 1.5182 3.3683 3.6264 10 1 1.9798 4.3446 3.6111 11 6 0.1441 3.2555 3.6379 12 7 -0.4176 2.0719 3.7537 13 14 -0.9199 4.7837 3.4892 14 1 -1.2023 5.0525 2.0563 15 1 -2.1981 4.5694 4.2139 16 1 -0.2049 5.9439 4.0790 17 6 2.1839 1.3946 4.9369 18 6 2.9733 1.7044 6.0286 19 6 2.7941 1.0333 7.2237 20 6 1.8316 0.0463 7.3246 21 6 1.0457 -0.2670 6.2315 22 6 1.2220 0.4070 5.0375 23 6 2.2972 1.9652 -1.2687 24 6 1.5083 3.2738 -1.3466 25 6 3.7949 2.2670 -1.3527 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 0.9040 1.0109 2.5299 30 1 2.5299 0.2863 2.5302 31 1 -1.3842 1.9926 3.7622 32 1 3.7281 2.4728 5.9485 33 1 3.4079 1.2784 8.0780 34 1 1.6934 -0.4798 8.2577 35 1 0.2940 -1.0385 6.3102 36 1 0.6077 0.1624 4.1836 37 1 2.0101 1.3179 -2.0972 38 1 1.7955 3.9212 -0.5181 39 1 1.7261 3.7738 -2.2904 40 1 0.4413 3.0588 -1.2867 41 1 4.0125 2.7664 -2.2969 42 1 4.0822 2.9144 -0.5242 43 1 4.3571 1.3348 -1.2971 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261728659.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:28 Heat of formation + Delta-G solvation = -2.746261 kcal Electronic energy + Delta-G solvation = -24726.548496 eV Core-core repulsion = 21353.273449 eV Total energy + Delta-G solvation = -3373.275047 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.44519 -38.16257 -36.68791 -34.90187 -33.86250 -31.10976 -30.29881 -29.76949 -28.24872 -26.93491 -26.30210 -25.50544 -22.96166 -21.76375 -21.18138 -19.59365 -19.03707 -17.21233 -16.12062 -16.00858 -15.51104 -15.35928 -14.88893 -14.02951 -13.92890 -13.84357 -13.71782 -13.60425 -13.15643 -13.01791 -12.72048 -12.52931 -12.19216 -11.76211 -11.74527 -11.47617 -11.44014 -11.33942 -11.01765 -10.91760 -10.86619 -10.75576 -10.38754 -10.15644 -10.06226 -9.92792 -9.27762 -9.14736 -8.69751 -8.42040 -8.35531 -7.78203 -7.42281 -5.98786 -4.09081 2.42665 2.52279 2.60853 3.28013 3.34287 3.39996 3.54726 4.40866 4.66562 4.99896 5.19381 5.23269 5.36510 5.44175 5.51917 5.63849 5.81624 5.83297 5.85827 5.91994 5.92946 6.03043 6.09819 6.14798 6.18268 6.42833 6.49571 6.56605 6.63981 6.64210 6.75226 6.80191 7.06437 7.16146 7.17940 7.28884 7.50077 7.56526 7.71045 7.92389 8.08318 8.19052 8.20045 8.34458 8.87519 9.04421 9.54006 10.94795 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014589 B = 0.006533 C = 0.005665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.733556 B = 4284.824621 C = 4941.878876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 O -0.148 6.148 3 N -0.489 5.489 4 C 0.538 3.462 5 O -0.504 6.504 6 C -0.134 4.134 7 C 0.086 3.914 8 H 0.037 0.963 9 C -0.469 4.469 10 H 0.060 0.940 11 C 0.060 3.940 12 N -0.890 5.890 13 Si 0.889 3.111 14 H -0.283 1.283 15 H -0.288 1.288 16 H -0.275 1.275 17 C -0.027 4.027 18 C -0.131 4.131 19 C -0.142 4.142 20 C -0.154 4.154 21 C -0.143 4.143 22 C -0.067 4.067 23 C 0.147 3.853 24 C -0.174 4.174 25 C -0.165 4.165 26 H 0.042 0.958 27 H 0.097 0.903 28 H 0.066 0.934 29 H 0.132 0.868 30 H 0.056 0.944 31 H 0.260 0.740 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.139 0.861 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.060 0.940 40 H 0.050 0.950 41 H 0.061 0.939 42 H 0.083 0.917 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.813 -5.071 -6.361 8.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 O -0.152 6.152 3 N -0.272 5.272 4 C 0.330 3.670 5 O -0.378 6.378 6 C -0.173 4.173 7 C 0.067 3.933 8 H 0.056 0.944 9 C -0.507 4.507 10 H 0.078 0.922 11 C -0.139 4.139 12 N -0.529 5.529 13 Si 0.717 3.283 14 H -0.209 1.209 15 H -0.214 1.214 16 H -0.199 1.199 17 C -0.027 4.027 18 C -0.150 4.150 19 C -0.160 4.160 20 C -0.172 4.172 21 C -0.161 4.161 22 C -0.086 4.086 23 C 0.046 3.954 24 C -0.232 4.232 25 C -0.223 4.223 26 H 0.061 0.939 27 H 0.115 0.885 28 H 0.085 0.915 29 H 0.150 0.850 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.123 0.877 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.156 0.844 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.101 0.899 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.019 -4.679 -6.336 8.131 hybrid contribution -1.378 0.797 -0.041 1.593 sum 0.640 -3.882 -6.377 7.493 Atomic orbital electron populations 1.23352 0.82353 1.03035 1.01782 1.90546 1.19646 1.08231 1.96788 1.50709 1.60308 1.09866 1.06282 1.21347 0.75931 0.85235 0.84447 1.90590 1.43295 1.18522 1.85371 1.21926 1.06792 0.97674 0.90950 1.17675 0.96159 0.92803 0.86685 0.94429 1.21003 0.90451 0.92032 1.47194 0.92220 1.24883 0.97911 0.95893 0.95241 1.69701 1.10253 1.21787 1.51193 0.86619 0.79817 0.83898 0.77930 1.20926 1.21425 1.19941 1.20319 0.93078 0.92352 0.96998 1.20892 1.00722 1.00037 0.93308 1.20791 0.99619 0.98384 0.97184 1.20760 0.98598 0.99925 0.97923 1.21038 0.99807 1.00903 0.94386 1.21347 0.95554 0.93871 0.97785 1.21117 0.95803 0.93207 0.85316 1.22319 0.99574 0.98016 1.03310 1.22187 0.94584 1.02439 1.03079 0.93920 0.88497 0.91514 0.85023 0.92513 0.93014 0.87668 0.88113 0.88323 0.88120 0.84355 0.90103 0.89497 0.92068 0.93128 0.92040 0.89861 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.10 11.44 101.05 1.16 1.05 16 2 O -0.15 -2.50 10.83 -11.47 -0.12 -2.62 16 3 N -0.49 -8.92 2.90 -53.81 -0.16 -9.08 16 4 C 0.54 11.54 6.93 -10.98 -0.08 11.46 16 5 O -0.50 -11.80 11.19 5.56 0.06 -11.74 16 6 C -0.13 -2.94 3.38 -27.88 -0.09 -3.04 16 7 C 0.09 2.06 1.97 -92.93 -0.18 1.88 16 8 H 0.04 0.92 7.91 -51.93 -0.41 0.51 16 9 C -0.47 -12.36 7.27 -34.44 -0.25 -12.61 16 10 H 0.06 1.66 7.82 -52.48 -0.41 1.24 16 11 C 0.06 1.55 5.12 -17.82 -0.09 1.46 16 12 N -0.89 -22.28 7.99 55.43 0.44 -21.83 16 13 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 17 C -0.03 -0.62 4.69 -104.62 -0.49 -1.11 16 18 C -0.13 -2.82 9.71 -39.58 -0.38 -3.21 16 19 C -0.14 -2.74 10.05 -39.59 -0.40 -3.14 16 20 C -0.15 -2.92 10.05 -39.59 -0.40 -3.31 16 21 C -0.14 -2.87 10.05 -39.59 -0.40 -3.26 16 22 C -0.07 -1.49 7.45 -39.58 -0.30 -1.78 16 23 C 0.15 2.27 3.54 -67.93 -0.24 2.03 16 24 C -0.17 -2.72 9.12 37.16 0.34 -2.38 16 25 C -0.16 -2.38 9.12 37.16 0.34 -2.04 16 26 H 0.04 0.56 8.14 -51.92 -0.42 0.14 16 27 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.07 1.13 7.13 -51.93 -0.37 0.76 16 29 H 0.13 3.03 3.69 -51.93 -0.19 2.84 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.26 6.36 8.31 -40.82 -0.34 6.02 16 32 H 0.11 2.14 8.06 -52.48 -0.42 1.72 16 33 H 0.10 1.67 8.06 -52.48 -0.42 1.24 16 34 H 0.10 1.59 8.06 -52.48 -0.42 1.17 16 35 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 36 H 0.14 3.14 5.18 -52.49 -0.27 2.87 16 37 H 0.08 1.07 8.12 -51.93 -0.42 0.65 16 38 H 0.09 1.65 6.18 -51.93 -0.32 1.32 16 39 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.08 1.43 6.16 -51.93 -0.32 1.11 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 343.37 15.07 5.17 5.17 Total: -1.00 -27.65 343.37 -7.59 -35.24 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -6.50 Total: 6.75 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: -1.46 Total: -18.00 kcal Atomic # 7 Polarization: -31.20 SS G_CDS: 0.29 Total: -30.91 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -0.06 Total: -14.36 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.65 -7.59 -35.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261728659.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.489 kcal (2) G-P(sol) polarization free energy of solvation -27.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds