Wall clock time and date at job start Tue Mar 31 2020 06:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 N 1.41607 * 114.00136 * 2 1 4 4 C 1.34775 * 119.99596 * 90.00343 * 3 2 1 5 5 O 1.21280 * 120.00090 * 180.02562 * 4 3 2 6 6 C 1.50707 * 120.00290 * 359.97438 * 4 3 2 7 7 C 1.52998 * 109.47074 * 180.02562 * 6 4 3 8 8 H 1.09006 * 109.47228 * 304.99961 * 7 6 4 9 9 C 1.50696 * 109.47262 * 64.99736 * 7 6 4 10 10 H 1.08005 * 120.00129 * 234.67449 * 9 7 6 11 11 C 1.37877 * 120.00082 * 54.67803 * 9 7 6 12 12 N 1.31521 * 120.00059 * 4.89162 * 11 9 7 13 13 Si 1.86805 * 120.00336 * 184.88695 * 11 9 7 14 14 H 1.48504 * 109.46611 * 90.00235 * 13 11 9 15 15 H 1.48497 * 109.47335 * 209.99927 * 13 11 9 16 16 H 1.48496 * 109.46969 * 330.00325 * 13 11 9 17 17 C 1.50696 * 109.46967 * 185.00021 * 7 6 4 18 18 C 1.38239 * 120.00187 * 151.48635 * 17 7 6 19 19 C 1.38228 * 120.00106 * 179.79141 * 18 17 7 20 20 C 1.38234 * 119.99857 * 0.43242 * 19 18 17 21 21 C 1.38227 * 120.00171 * 359.81703 * 20 19 18 22 22 C 1.38234 * 120.00163 * 359.97438 * 21 20 19 23 23 C 1.46494 * 119.99879 * 270.27755 * 3 2 1 24 24 C 1.52996 * 109.46896 * 119.72878 * 23 3 2 25 25 C 1.53004 * 109.46899 * 239.72129 * 23 3 2 26 26 H 1.09007 * 109.47198 * 59.99670 * 1 2 3 27 27 H 1.08993 * 109.47266 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47236 * 299.99946 * 1 2 3 29 29 H 1.09005 * 109.46865 * 300.00002 * 6 4 3 30 30 H 1.08998 * 109.46651 * 60.00093 * 6 4 3 31 31 H 0.96994 * 120.00348 * 179.97438 * 12 11 9 32 32 H 1.08008 * 119.99451 * 359.97438 * 18 17 7 33 33 H 1.08005 * 120.00325 * 180.27268 * 19 18 17 34 34 H 1.08010 * 119.99711 * 179.83732 * 20 19 18 35 35 H 1.08002 * 120.00305 * 179.97438 * 21 20 19 36 36 H 1.07997 * 120.00387 * 180.02562 * 22 21 20 37 37 H 1.08993 * 109.47757 * 359.72232 * 23 3 2 38 38 H 1.08997 * 109.47718 * 59.99601 * 24 23 3 39 39 H 1.09010 * 109.47346 * 179.97438 * 24 23 3 40 40 H 1.09004 * 109.46973 * 299.99335 * 24 23 3 41 41 H 1.09001 * 109.47138 * 179.97438 * 25 23 3 42 42 H 1.08998 * 109.47669 * 300.00373 * 25 23 3 43 43 H 1.09005 * 109.47151 * 60.00313 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.2791 1.9091 1.1672 5 8 2.7720 3.0173 1.1673 6 6 1.9721 1.2209 2.4724 7 6 2.3761 2.1294 3.6353 8 1 3.4235 2.4119 3.5288 9 6 1.5182 3.3683 3.6264 10 1 1.9798 4.3446 3.6111 11 6 0.1441 3.2555 3.6379 12 7 -0.4176 2.0719 3.7537 13 14 -0.9199 4.7837 3.4892 14 1 -1.2023 5.0525 2.0563 15 1 -2.1981 4.5694 4.2139 16 1 -0.2049 5.9439 4.0790 17 6 2.1839 1.3946 4.9369 18 6 2.9733 1.7044 6.0286 19 6 2.7941 1.0333 7.2237 20 6 1.8316 0.0463 7.3246 21 6 1.0457 -0.2670 6.2315 22 6 1.2220 0.4070 5.0375 23 6 2.2972 1.9652 -1.2687 24 6 1.5083 3.2738 -1.3466 25 6 3.7949 2.2670 -1.3527 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 0.9040 1.0109 2.5299 30 1 2.5299 0.2863 2.5302 31 1 -1.3842 1.9926 3.7622 32 1 3.7281 2.4728 5.9485 33 1 3.4079 1.2784 8.0780 34 1 1.6934 -0.4798 8.2577 35 1 0.2940 -1.0385 6.3102 36 1 0.6077 0.1624 4.1836 37 1 2.0101 1.3179 -2.0972 38 1 1.7955 3.9212 -0.5181 39 1 1.7261 3.7738 -2.2904 40 1 0.4413 3.0588 -1.2867 41 1 4.0125 2.7664 -2.2969 42 1 4.0822 2.9144 -0.5242 43 1 4.3571 1.3348 -1.2971 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261728659.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:27 Heat of formation + Delta-G solvation = -15.871173 kcal Electronic energy + Delta-G solvation = -24727.117635 eV Core-core repulsion = 21353.273449 eV Total energy + Delta-G solvation = -3373.844186 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.01768 -39.76800 -38.15983 -36.43735 -35.45947 -32.97984 -31.78621 -31.35761 -29.87326 -28.15742 -27.90182 -27.00904 -24.66195 -23.30637 -22.72061 -21.25406 -20.53531 -18.84119 -17.96307 -17.46452 -17.07358 -16.88872 -16.64256 -15.66577 -15.50115 -15.23750 -15.11862 -15.06778 -14.77699 -14.58907 -14.17514 -13.84945 -13.66830 -13.41067 -13.34793 -13.13012 -12.94605 -12.82201 -12.69631 -12.63457 -12.30927 -12.18040 -12.04999 -11.86387 -11.68735 -11.39050 -11.05923 -11.01436 -10.54193 -10.13165 -9.85684 -9.39667 -9.11387 -7.94029 -6.10478 0.89146 1.00499 1.06982 1.34796 1.37812 1.45929 1.89416 2.43969 3.19470 3.28557 3.38210 3.98027 4.12948 4.22816 4.33022 4.36337 4.41496 4.48621 4.51136 4.53475 4.69268 4.72707 4.74863 4.77892 4.83844 4.89374 4.93206 4.94262 5.09363 5.14457 5.32473 5.37210 5.38324 5.54333 5.61252 5.67639 5.71981 5.90918 5.95018 6.09389 6.35624 6.42484 6.58346 6.67886 6.84675 7.42113 7.51899 8.95048 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014589 B = 0.006533 C = 0.005665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.733556 B = 4284.824621 C = 4941.878876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 O -0.153 6.153 3 N -0.488 5.488 4 C 0.531 3.469 5 O -0.533 6.533 6 C -0.124 4.124 7 C 0.089 3.911 8 H 0.015 0.985 9 C -0.489 4.489 10 H 0.031 0.969 11 C 0.036 3.964 12 N -0.884 5.884 13 Si 0.927 3.073 14 H -0.284 1.284 15 H -0.280 1.280 16 H -0.284 1.284 17 C -0.053 4.053 18 C -0.151 4.151 19 C -0.139 4.139 20 C -0.148 4.148 21 C -0.147 4.147 22 C -0.081 4.081 23 C 0.141 3.859 24 C -0.168 4.168 25 C -0.159 4.159 26 H 0.057 0.943 27 H 0.132 0.868 28 H 0.037 0.963 29 H 0.125 0.875 30 H 0.061 0.939 31 H 0.261 0.739 32 H 0.104 0.896 33 H 0.133 0.867 34 H 0.136 0.864 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.113 0.887 38 H 0.047 0.953 39 H 0.095 0.905 40 H 0.045 0.955 41 H 0.093 0.907 42 H 0.049 0.951 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.016 -6.679 -6.559 9.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 O -0.157 6.157 3 N -0.269 5.269 4 C 0.323 3.677 5 O -0.409 6.409 6 C -0.163 4.163 7 C 0.070 3.930 8 H 0.034 0.966 9 C -0.527 4.527 10 H 0.049 0.951 11 C -0.163 4.163 12 N -0.523 5.523 13 Si 0.755 3.245 14 H -0.210 1.210 15 H -0.205 1.205 16 H -0.209 1.209 17 C -0.054 4.054 18 C -0.169 4.169 19 C -0.157 4.157 20 C -0.166 4.166 21 C -0.165 4.165 22 C -0.099 4.099 23 C 0.041 3.959 24 C -0.227 4.227 25 C -0.217 4.217 26 H 0.076 0.924 27 H 0.150 0.850 28 H 0.056 0.944 29 H 0.142 0.858 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.122 0.878 33 H 0.151 0.849 34 H 0.154 0.846 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.131 0.869 38 H 0.066 0.934 39 H 0.113 0.887 40 H 0.065 0.935 41 H 0.112 0.888 42 H 0.068 0.932 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.208 -6.318 -6.554 9.183 hybrid contribution -1.122 1.233 0.027 1.667 sum 0.086 -5.085 -6.527 8.275 Atomic orbital electron populations 1.23497 0.80789 1.05103 1.01044 1.90526 1.21178 1.07155 1.96798 1.50586 1.59700 1.10199 1.06405 1.21192 0.76115 0.85018 0.85347 1.90583 1.44579 1.19610 1.86176 1.21739 1.06095 0.97410 0.91100 1.17550 0.94370 0.92693 0.88435 0.96632 1.20935 0.91289 0.91704 1.48730 0.95101 1.25219 0.98233 0.97638 0.95231 1.69789 1.10255 1.21845 1.50460 0.86042 0.78953 0.81854 0.77663 1.21017 1.20502 1.20936 1.20321 0.94613 0.93546 0.96871 1.21073 1.00963 1.00758 0.94104 1.21156 0.99796 0.97647 0.97116 1.21195 0.97243 0.99227 0.98936 1.21351 1.00376 1.00982 0.93794 1.21288 0.95586 0.94442 0.98615 1.21434 0.96416 0.93418 0.84654 1.22255 0.99220 0.97726 1.03455 1.22129 0.93925 1.02238 1.03411 0.92387 0.84984 0.94410 0.85802 0.92042 0.92909 0.87813 0.84937 0.84572 0.85636 0.85515 0.86868 0.93400 0.88678 0.93535 0.88795 0.93156 0.92261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.18 11.44 113.37 1.30 1.11 16 2 O -0.15 -4.98 10.83 -38.80 -0.42 -5.40 16 3 N -0.49 -17.74 2.90 -442.55 -1.29 -19.03 16 4 C 0.53 23.64 6.93 87.66 0.61 24.25 16 5 O -0.53 -26.39 11.19 -3.03 -0.03 -26.42 16 6 C -0.12 -5.66 3.38 29.85 0.10 -5.56 16 7 C 0.09 4.47 1.97 -12.29 -0.02 4.45 16 8 H 0.02 0.81 7.91 -2.38 -0.02 0.79 16 9 C -0.49 -27.03 7.27 25.60 0.19 -26.84 16 10 H 0.03 1.83 7.82 -2.91 -0.02 1.80 16 11 C 0.04 1.92 5.12 84.65 0.43 2.35 16 12 N -0.88 -44.82 7.99 21.45 0.17 -44.65 16 13 Si 0.93 44.01 29.54 68.60 2.03 46.03 16 14 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 15 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 16 H -0.28 -13.82 7.11 99.48 0.71 -13.12 16 17 C -0.05 -2.50 4.69 -19.87 -0.09 -2.59 16 18 C -0.15 -6.52 9.71 22.27 0.22 -6.30 16 19 C -0.14 -5.09 10.05 22.27 0.22 -4.87 16 20 C -0.15 -5.14 10.05 22.27 0.22 -4.92 16 21 C -0.15 -5.58 10.05 22.27 0.22 -5.36 16 22 C -0.08 -3.58 7.45 22.27 0.17 -3.41 16 23 C 0.14 4.16 3.54 44.99 0.16 4.32 16 24 C -0.17 -5.14 9.12 71.98 0.66 -4.48 16 25 C -0.16 -4.44 9.12 71.98 0.66 -3.79 16 26 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 27 H 0.13 2.66 8.14 -2.39 -0.02 2.64 16 28 H 0.04 1.26 7.13 -2.38 -0.02 1.25 16 29 H 0.12 5.89 3.69 -2.38 -0.01 5.88 16 30 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.26 12.77 8.31 -92.71 -0.77 12.00 16 32 H 0.10 4.36 8.06 -2.91 -0.02 4.34 16 33 H 0.13 3.95 8.06 -2.91 -0.02 3.93 16 34 H 0.14 3.72 8.06 -2.91 -0.02 3.69 16 35 H 0.13 4.07 8.06 -2.91 -0.02 4.05 16 36 H 0.13 5.82 5.18 -2.91 -0.02 5.81 16 37 H 0.11 2.64 8.12 -2.39 -0.02 2.62 16 38 H 0.05 1.86 6.18 -2.39 -0.01 1.84 16 39 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 40 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.05 1.76 6.16 -2.39 -0.01 1.75 16 43 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 Total: -1.00 -62.00 343.37 6.48 -55.52 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: 0.99 Total: 25.58 kcal Atomic # 6 Polarization: -36.67 SS G_CDS: 5.03 Total: -31.64 kcal Atomic # 7 Polarization: -62.56 SS G_CDS: -1.11 Total: -63.67 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -0.45 Total: -31.83 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -62.00 6.48 -55.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261728659.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.652 kcal (2) G-P(sol) polarization free energy of solvation -62.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds