Wall clock time and date at job start Tue Mar 31 2020 06:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47229 * 2 1 4 4 H 1.09007 * 109.47092 * 303.94994 * 3 2 1 5 5 C 1.50705 * 109.47286 * 183.95261 * 3 2 1 6 6 H 1.07997 * 119.99985 * 245.40259 * 5 3 2 7 7 C 1.37875 * 119.99866 * 65.40477 * 5 3 2 8 8 N 1.31515 * 120.00436 * 8.64557 * 7 5 3 9 9 Si 1.86800 * 119.99725 * 188.65111 * 7 5 3 10 10 H 1.48502 * 109.47360 * 84.99062 * 9 7 5 11 11 H 1.48506 * 109.47087 * 204.99160 * 9 7 5 12 12 H 1.48503 * 109.47237 * 324.98975 * 9 7 5 13 13 N 1.46495 * 109.47390 * 63.94548 * 3 2 1 14 14 C 1.34770 * 120.00523 * 274.72837 * 13 3 2 15 15 O 1.21281 * 119.99843 * 359.97438 * 14 13 3 16 16 C 1.50700 * 120.00389 * 180.02562 * 14 13 3 17 17 C 1.53002 * 109.46741 * 299.99987 * 16 14 13 18 18 C 1.53008 * 109.47361 * 59.99392 * 16 14 13 19 19 O 1.42899 * 109.47591 * 180.02562 * 16 14 13 20 20 C 1.35904 * 116.99315 * 299.96784 * 19 16 14 21 21 C 1.38726 * 120.06130 * 4.76334 * 20 19 16 22 22 C 1.38142 * 119.94573 * 179.75030 * 21 20 19 23 23 C 1.38266 * 120.05463 * 0.50074 * 22 21 20 24 24 C 1.38266 * 120.11338 * 359.77007 * 23 22 21 25 25 C 1.38152 * 120.05186 * 359.97438 * 24 23 22 26 26 H 1.08997 * 109.47093 * 300.00355 * 1 2 3 27 27 H 1.09006 * 109.47105 * 60.00250 * 1 2 3 28 28 H 1.08998 * 109.47220 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47093 * 239.99645 * 2 1 3 30 30 H 1.09000 * 109.46756 * 119.99565 * 2 1 3 31 31 H 0.96994 * 120.00393 * 180.02562 * 8 7 5 32 32 H 0.97003 * 119.99753 * 95.00217 * 13 3 2 33 33 H 1.09004 * 109.47557 * 64.95994 * 17 16 14 34 34 H 1.09006 * 109.47198 * 184.95654 * 17 16 14 35 35 H 1.09001 * 109.47177 * 304.95408 * 17 16 14 36 36 H 1.09003 * 109.46556 * 68.63880 * 18 16 14 37 37 H 1.08998 * 109.46909 * 188.63804 * 18 16 14 38 38 H 1.08996 * 109.46862 * 308.64194 * 18 16 14 39 39 H 1.08005 * 120.02685 * 359.97438 * 21 20 19 40 40 H 1.08002 * 119.97296 * 180.27447 * 22 21 20 41 41 H 1.08002 * 119.94235 * 179.75148 * 23 22 21 42 42 H 1.07999 * 119.97380 * 179.97438 * 24 23 22 43 43 H 1.07997 * 120.02356 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6200 1.9763 -0.8525 5 6 3.5439 1.4436 -0.0979 6 1 4.1383 1.8137 0.7243 7 6 4.1609 0.9722 -1.2373 8 7 3.4441 0.6814 -2.3009 9 14 6.0149 0.7465 -1.2701 10 1 6.3620 -0.5818 -0.7040 11 1 6.4989 0.8291 -2.6716 12 1 6.6578 1.8128 -0.4608 13 7 1.6309 2.1051 1.2408 14 6 0.4140 2.6775 1.3296 15 8 -0.3423 2.6444 0.3820 16 6 -0.0066 3.3597 2.6058 17 6 0.0110 2.3487 3.7541 18 6 0.9627 4.5019 2.9171 19 8 -1.3274 3.8834 2.4531 20 6 -1.5170 4.8016 1.4693 21 6 -0.4795 5.1175 0.6043 22 6 -0.6764 6.0474 -0.3982 23 6 -1.9032 6.6706 -0.5333 24 6 -2.9372 6.3617 0.3310 25 6 -2.7469 5.4285 1.3318 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8781 0.3495 -3.1023 32 1 2.2374 2.1354 1.9972 33 1 1.0338 2.0147 3.9285 34 1 -0.3768 2.8187 4.6580 35 1 -0.6115 1.4926 3.4941 36 1 0.8392 5.2944 2.1790 37 1 0.7529 4.8956 3.9116 38 1 1.9864 4.1292 2.8822 39 1 0.4804 4.6342 0.7122 40 1 0.1297 6.2904 -1.0746 41 1 -2.0539 7.4003 -1.3152 42 1 -3.8944 6.8501 0.2236 43 1 -3.5548 5.1879 2.0069 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320343585.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:38 Heat of formation + Delta-G solvation = -43.761740 kcal Electronic energy + Delta-G solvation = -24627.920642 eV Core-core repulsion = 21252.867030 eV Total energy + Delta-G solvation = -3375.053612 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.01947 -38.57183 -37.11888 -35.01343 -33.69997 -32.14810 -30.83821 -30.64844 -29.53343 -27.33614 -27.00691 -23.85157 -23.05155 -22.16875 -21.96551 -20.05804 -19.34897 -18.25095 -16.69832 -16.31704 -15.92335 -15.61242 -15.22038 -14.79619 -14.49870 -14.15407 -13.84303 -13.66239 -13.26679 -12.94501 -12.73746 -12.68996 -12.38683 -12.13051 -12.02587 -11.99250 -11.69381 -11.48227 -11.39954 -11.27907 -11.05618 -10.83804 -10.67786 -10.49099 -10.37749 -10.24886 -9.73273 -9.15875 -9.01556 -8.65380 -8.52902 -7.98277 -7.68618 -6.19066 -4.25536 1.64851 1.74858 3.14651 3.21423 3.28126 3.29205 3.34172 3.85622 4.09270 4.31760 4.76267 4.88179 5.13843 5.14618 5.16432 5.17553 5.36190 5.49872 5.50038 5.61589 5.64886 5.72301 5.79960 5.94705 6.05060 6.11780 6.26689 6.31150 6.35579 6.55769 6.59181 6.70516 6.81633 6.94455 7.00722 7.12048 7.26861 7.34062 7.53055 7.61894 7.66613 7.78522 8.01792 8.55383 8.72406 9.00622 9.40633 10.88889 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018544 B = 0.004974 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.538336 B = 5627.492408 C = 6044.951499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.119 4.119 3 C 0.269 3.731 4 H 0.056 0.944 5 C -0.539 4.539 6 H 0.061 0.939 7 C 0.070 3.930 8 N -0.879 5.879 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.701 5.701 14 C 0.479 3.521 15 O -0.524 6.524 16 C 0.092 3.908 17 C -0.133 4.133 18 C -0.193 4.193 19 O -0.292 6.292 20 C 0.145 3.855 21 C -0.172 4.172 22 C -0.087 4.087 23 C -0.163 4.163 24 C -0.093 4.093 25 C -0.160 4.160 26 H 0.039 0.961 27 H 0.051 0.949 28 H 0.024 0.976 29 H 0.080 0.920 30 H 0.034 0.966 31 H 0.265 0.735 32 H 0.387 0.613 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.134 0.866 40 H 0.120 0.880 41 H 0.117 0.883 42 H 0.122 0.878 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.685 7.907 9.995 14.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.158 4.158 3 C 0.168 3.832 4 H 0.074 0.926 5 C -0.577 4.577 6 H 0.079 0.921 7 C -0.134 4.134 8 N -0.515 5.515 9 Si 0.724 3.276 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.350 5.350 14 C 0.262 3.738 15 O -0.401 6.401 16 C 0.050 3.950 17 C -0.191 4.191 18 C -0.250 4.250 19 O -0.205 6.205 20 C 0.100 3.900 21 C -0.191 4.191 22 C -0.105 4.105 23 C -0.181 4.181 24 C -0.111 4.111 25 C -0.178 4.178 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.043 0.957 29 H 0.099 0.901 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.220 0.780 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.151 0.849 40 H 0.138 0.862 41 H 0.135 0.865 42 H 0.140 0.860 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.343 7.711 9.227 14.090 hybrid contribution 1.527 -0.314 0.051 1.559 sum -5.817 7.398 9.278 13.215 Atomic orbital electron populations 1.21841 0.98026 0.98222 1.01465 1.21846 0.92903 0.99826 1.01260 1.18820 0.94136 0.88844 0.81430 0.92589 1.21150 0.90408 1.43974 1.02157 0.92114 1.24877 0.98491 0.95072 0.94936 1.69973 1.35824 1.43233 1.02490 0.86539 0.84999 0.78707 0.77317 1.20406 1.21152 1.19909 1.46539 1.14634 1.55263 1.18606 1.20670 0.83529 0.80322 0.89238 1.90790 1.52049 1.59108 1.38187 1.21862 0.82683 0.94942 0.95558 1.21756 1.03623 0.97796 0.95902 1.22775 0.99563 0.98824 1.03817 1.86109 1.29671 1.54498 1.50214 1.18798 0.94222 0.88669 0.88276 1.21591 0.99877 1.00296 0.97314 1.20956 0.97342 0.95420 0.96801 1.20956 0.93761 1.02487 1.00886 1.20803 0.98656 0.97024 0.94600 1.20294 0.95550 1.00130 1.01861 0.94158 0.92958 0.95736 0.90146 0.94679 0.92499 0.78012 0.89791 0.90730 0.91071 0.89908 0.90766 0.90118 0.84900 0.86158 0.86493 0.86002 0.85843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.50 37.16 0.32 -2.72 16 2 C -0.12 -2.80 5.49 -26.73 -0.15 -2.94 16 3 C 0.27 6.50 2.12 -69.08 -0.15 6.35 16 4 H 0.06 1.60 7.52 -51.92 -0.39 1.21 16 5 C -0.54 -13.70 8.66 -34.44 -0.30 -13.99 16 6 H 0.06 1.47 7.73 -52.49 -0.41 1.06 16 7 C 0.07 1.85 5.18 -17.82 -0.09 1.75 16 8 N -0.88 -24.41 12.11 55.43 0.67 -23.74 16 9 Si 0.90 20.14 29.55 -169.99 -5.02 15.12 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 13 N -0.70 -13.65 4.74 -54.93 -0.26 -13.91 16 14 C 0.48 9.13 3.09 -10.99 -0.03 9.10 16 15 O -0.52 -11.98 10.93 -14.35 -0.16 -12.14 16 16 C 0.09 1.39 0.96 -91.77 -0.09 1.30 16 17 C -0.13 -1.61 8.69 37.16 0.32 -1.29 16 18 C -0.19 -2.45 8.13 37.16 0.30 -2.15 16 19 O -0.29 -4.92 9.63 -39.35 -0.38 -5.30 16 20 C 0.15 2.49 5.53 -39.22 -0.22 2.27 16 21 C -0.17 -3.04 5.54 -39.44 -0.22 -3.25 16 22 C -0.09 -1.39 10.04 -39.61 -0.40 -1.79 16 23 C -0.16 -2.28 10.04 -39.56 -0.40 -2.68 16 24 C -0.09 -1.25 10.04 -39.60 -0.40 -1.65 16 25 C -0.16 -2.41 9.99 -39.43 -0.39 -2.80 16 26 H 0.04 0.86 5.69 -51.93 -0.30 0.57 16 27 H 0.05 1.25 7.79 -51.93 -0.40 0.84 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.08 2.09 6.78 -51.93 -0.35 1.74 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.39 6.47 7.38 -40.82 -0.30 6.17 16 33 H 0.08 0.86 7.71 -51.93 -0.40 0.46 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.08 1.15 4.81 -51.93 -0.25 0.90 16 37 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 38 H 0.08 0.94 7.33 -51.93 -0.38 0.56 16 39 H 0.13 2.48 3.79 -52.48 -0.20 2.29 16 40 H 0.12 1.77 8.06 -52.49 -0.42 1.34 16 41 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 42 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 43 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 338.08 15.07 5.09 5.09 Total: -1.00 -30.22 338.08 -8.26 -38.48 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -6.32 Total: 10.87 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: -1.89 Total: -14.49 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.41 Total: -37.65 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -0.54 Total: -17.43 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.22 -8.26 -38.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320343585.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.282 kcal (2) G-P(sol) polarization free energy of solvation -30.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds