Wall clock time and date at job start Tue Mar 31 2020 06:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47229 * 2 1 4 4 H 1.09007 * 109.47092 * 303.94994 * 3 2 1 5 5 C 1.50705 * 109.47286 * 183.95261 * 3 2 1 6 6 H 1.07997 * 119.99985 * 245.40259 * 5 3 2 7 7 C 1.37875 * 119.99866 * 65.40477 * 5 3 2 8 8 N 1.31515 * 120.00436 * 8.64557 * 7 5 3 9 9 Si 1.86800 * 119.99725 * 188.65111 * 7 5 3 10 10 H 1.48502 * 109.47360 * 84.99062 * 9 7 5 11 11 H 1.48506 * 109.47087 * 204.99160 * 9 7 5 12 12 H 1.48503 * 109.47237 * 324.98975 * 9 7 5 13 13 N 1.46495 * 109.47390 * 63.94548 * 3 2 1 14 14 C 1.34770 * 120.00523 * 274.72837 * 13 3 2 15 15 O 1.21281 * 119.99843 * 359.97438 * 14 13 3 16 16 C 1.50700 * 120.00389 * 180.02562 * 14 13 3 17 17 C 1.53002 * 109.46741 * 299.99987 * 16 14 13 18 18 C 1.53008 * 109.47361 * 59.99392 * 16 14 13 19 19 O 1.42899 * 109.47591 * 180.02562 * 16 14 13 20 20 C 1.35904 * 116.99315 * 299.96784 * 19 16 14 21 21 C 1.38726 * 120.06130 * 4.76334 * 20 19 16 22 22 C 1.38142 * 119.94573 * 179.75030 * 21 20 19 23 23 C 1.38266 * 120.05463 * 0.50074 * 22 21 20 24 24 C 1.38266 * 120.11338 * 359.77007 * 23 22 21 25 25 C 1.38152 * 120.05186 * 359.97438 * 24 23 22 26 26 H 1.08997 * 109.47093 * 300.00355 * 1 2 3 27 27 H 1.09006 * 109.47105 * 60.00250 * 1 2 3 28 28 H 1.08998 * 109.47220 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47093 * 239.99645 * 2 1 3 30 30 H 1.09000 * 109.46756 * 119.99565 * 2 1 3 31 31 H 0.96994 * 120.00393 * 180.02562 * 8 7 5 32 32 H 0.97003 * 119.99753 * 95.00217 * 13 3 2 33 33 H 1.09004 * 109.47557 * 64.95994 * 17 16 14 34 34 H 1.09006 * 109.47198 * 184.95654 * 17 16 14 35 35 H 1.09001 * 109.47177 * 304.95408 * 17 16 14 36 36 H 1.09003 * 109.46556 * 68.63880 * 18 16 14 37 37 H 1.08998 * 109.46909 * 188.63804 * 18 16 14 38 38 H 1.08996 * 109.46862 * 308.64194 * 18 16 14 39 39 H 1.08005 * 120.02685 * 359.97438 * 21 20 19 40 40 H 1.08002 * 119.97296 * 180.27447 * 22 21 20 41 41 H 1.08002 * 119.94235 * 179.75148 * 23 22 21 42 42 H 1.07999 * 119.97380 * 179.97438 * 24 23 22 43 43 H 1.07997 * 120.02356 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6200 1.9763 -0.8525 5 6 3.5439 1.4436 -0.0979 6 1 4.1383 1.8137 0.7243 7 6 4.1609 0.9722 -1.2373 8 7 3.4441 0.6814 -2.3009 9 14 6.0149 0.7465 -1.2701 10 1 6.3620 -0.5818 -0.7040 11 1 6.4989 0.8291 -2.6716 12 1 6.6578 1.8128 -0.4608 13 7 1.6309 2.1051 1.2408 14 6 0.4140 2.6775 1.3296 15 8 -0.3423 2.6444 0.3820 16 6 -0.0066 3.3597 2.6058 17 6 0.0110 2.3487 3.7541 18 6 0.9627 4.5019 2.9171 19 8 -1.3274 3.8834 2.4531 20 6 -1.5170 4.8016 1.4693 21 6 -0.4795 5.1175 0.6043 22 6 -0.6764 6.0474 -0.3982 23 6 -1.9032 6.6706 -0.5333 24 6 -2.9372 6.3617 0.3310 25 6 -2.7469 5.4285 1.3318 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8781 0.3495 -3.1023 32 1 2.2374 2.1354 1.9972 33 1 1.0338 2.0147 3.9285 34 1 -0.3768 2.8187 4.6580 35 1 -0.6115 1.4926 3.4941 36 1 0.8392 5.2944 2.1790 37 1 0.7529 4.8956 3.9116 38 1 1.9864 4.1292 2.8822 39 1 0.4804 4.6342 0.7122 40 1 0.1297 6.2904 -1.0746 41 1 -2.0539 7.4003 -1.3152 42 1 -3.8944 6.8501 0.2236 43 1 -3.5548 5.1879 2.0069 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320343585.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:37 Heat of formation + Delta-G solvation = -61.404096 kcal Electronic energy + Delta-G solvation = -24628.685672 eV Core-core repulsion = 21252.867030 eV Total energy + Delta-G solvation = -3375.818642 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.33726 -39.98709 -38.39504 -36.80898 -35.05437 -33.97539 -32.50807 -31.85039 -30.71465 -28.93835 -28.31500 -25.41504 -24.63823 -23.37976 -23.33216 -21.71500 -20.93678 -19.70914 -18.23236 -17.68076 -17.46115 -17.09447 -16.65410 -16.27618 -16.08535 -15.47163 -15.36863 -14.89261 -14.66032 -14.43241 -14.24758 -13.93891 -13.52552 -13.46329 -13.38717 -13.23155 -13.12385 -13.05003 -12.92195 -12.86618 -12.62513 -12.44725 -12.18706 -12.10855 -11.85470 -11.71466 -11.59506 -11.10452 -10.58533 -10.48588 -9.88559 -9.63345 -8.97272 -8.19820 -6.33538 0.46308 0.56543 1.44203 1.45063 1.54291 1.70548 2.11630 2.32221 2.51239 2.90449 3.12228 3.68900 3.77000 3.78022 3.98969 4.02151 4.28347 4.41534 4.42867 4.49480 4.53005 4.58607 4.61788 4.68758 4.70316 4.74214 4.87397 5.01927 5.07865 5.10596 5.15191 5.20581 5.38499 5.42941 5.49744 5.53850 5.59509 5.64325 5.72139 5.84619 5.92319 6.05496 6.40977 6.75108 6.91949 7.32163 7.51343 8.88582 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018544 B = 0.004974 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.538336 B = 5627.492408 C = 6044.951499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.112 4.112 3 C 0.280 3.720 4 H 0.000 1.000 5 C -0.547 4.547 6 H 0.074 0.926 7 C 0.019 3.981 8 N -0.918 5.918 9 Si 0.966 3.034 10 H -0.270 1.270 11 H -0.290 1.290 12 H -0.262 1.262 13 N -0.695 5.695 14 C 0.478 3.522 15 O -0.566 6.566 16 C 0.096 3.904 17 C -0.132 4.132 18 C -0.188 4.188 19 O -0.300 6.300 20 C 0.123 3.877 21 C -0.193 4.193 22 C -0.109 4.109 23 C -0.161 4.161 24 C -0.087 4.087 25 C -0.168 4.168 26 H 0.044 0.956 27 H 0.021 0.979 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.264 0.736 32 H 0.403 0.597 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.113 0.887 40 H 0.121 0.879 41 H 0.146 0.854 42 H 0.161 0.839 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.709 8.660 12.193 16.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.151 4.151 3 C 0.176 3.824 4 H 0.018 0.982 5 C -0.585 4.585 6 H 0.092 0.908 7 C -0.182 4.182 8 N -0.556 5.556 9 Si 0.790 3.210 10 H -0.196 1.196 11 H -0.217 1.217 12 H -0.187 1.187 13 N -0.346 5.346 14 C 0.264 3.736 15 O -0.446 6.446 16 C 0.054 3.946 17 C -0.189 4.189 18 C -0.245 4.245 19 O -0.214 6.214 20 C 0.079 3.921 21 C -0.211 4.211 22 C -0.127 4.127 23 C -0.179 4.179 24 C -0.104 4.104 25 C -0.186 4.186 26 H 0.063 0.937 27 H 0.041 0.959 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.239 0.761 33 H 0.123 0.877 34 H 0.120 0.880 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.121 0.879 38 H 0.109 0.891 39 H 0.131 0.869 40 H 0.139 0.861 41 H 0.164 0.836 42 H 0.178 0.822 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.358 8.479 11.475 16.054 hybrid contribution 1.454 -0.480 -0.673 1.672 sum -5.905 8.000 10.802 14.681 Atomic orbital electron populations 1.21665 0.96962 0.99217 1.00182 1.21696 0.93727 0.99173 1.00477 1.18347 0.93542 0.88829 0.81647 0.98175 1.21527 0.91147 1.43380 1.02465 0.90754 1.25750 1.03094 0.94791 0.94548 1.70132 1.37794 1.44461 1.03163 0.85460 0.79372 0.79082 0.77049 1.19580 1.21654 1.18661 1.46244 1.15444 1.55291 1.17637 1.21462 0.82537 0.79303 0.90309 1.90766 1.53203 1.60432 1.40226 1.22031 0.82710 0.96001 0.93873 1.21865 1.04954 0.96600 0.95455 1.22761 0.99363 0.97478 1.04858 1.86092 1.30555 1.54592 1.50138 1.19074 0.94959 0.89399 0.88709 1.21525 0.99550 1.01359 0.98693 1.21179 0.98742 0.95975 0.96839 1.21320 0.92863 1.02306 1.01455 1.21274 0.99949 0.96015 0.93212 1.20699 0.95233 1.00091 1.02601 0.93692 0.95931 0.93432 0.93094 0.93013 0.92708 0.76144 0.87723 0.88003 0.92275 0.91504 0.87877 0.89119 0.86946 0.86078 0.83624 0.82176 0.83958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.52 8.50 71.98 0.61 -4.91 16 2 C -0.11 -5.35 5.49 30.59 0.17 -5.18 16 3 C 0.28 13.96 2.12 44.25 0.09 14.05 16 4 H 0.00 0.02 7.52 -2.38 -0.02 0.00 16 5 C -0.55 -28.08 8.66 25.60 0.22 -27.85 16 6 H 0.07 3.53 7.73 -2.91 -0.02 3.50 16 7 C 0.02 0.99 5.18 84.65 0.44 1.43 16 8 N -0.92 -52.82 12.11 21.45 0.26 -52.56 16 9 Si 0.97 41.36 29.55 68.60 2.03 43.38 16 10 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 11 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 13 N -0.70 -27.34 4.74 -446.11 -2.12 -29.45 16 14 C 0.48 18.57 3.09 87.66 0.27 18.84 16 15 O -0.57 -27.11 10.93 16.00 0.17 -26.93 16 16 C 0.10 2.81 0.96 -11.54 -0.01 2.80 16 17 C -0.13 -2.87 8.69 71.98 0.63 -2.24 16 18 C -0.19 -4.52 8.13 71.98 0.59 -3.94 16 19 O -0.30 -9.96 9.63 -73.43 -0.71 -10.67 16 20 C 0.12 4.23 5.53 22.50 0.12 4.35 16 21 C -0.19 -7.01 5.54 22.36 0.12 -6.89 16 22 C -0.11 -3.58 10.04 22.25 0.22 -3.35 16 23 C -0.16 -4.31 10.04 22.28 0.22 -4.08 16 24 C -0.09 -2.14 10.04 22.26 0.22 -1.92 16 25 C -0.17 -4.83 9.99 22.37 0.22 -4.60 16 26 H 0.04 1.95 5.69 -2.39 -0.01 1.93 16 27 H 0.02 1.10 7.79 -2.38 -0.02 1.09 16 28 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.05 2.74 6.78 -2.39 -0.02 2.72 16 30 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 32 H 0.40 13.07 7.38 -92.71 -0.68 12.39 16 33 H 0.10 1.82 7.71 -2.38 -0.02 1.80 16 34 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 35 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.07 1.86 4.81 -2.39 -0.01 1.85 16 37 H 0.10 1.88 8.13 -2.39 -0.02 1.86 16 38 H 0.09 1.96 7.33 -2.39 -0.02 1.95 16 39 H 0.11 4.44 3.79 -2.91 -0.01 4.43 16 40 H 0.12 3.75 8.06 -2.91 -0.02 3.73 16 41 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 42 H 0.16 2.67 8.06 -2.91 -0.02 2.64 16 43 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -69.00 338.08 4.11 -64.88 By element: Atomic # 1 Polarization: 34.51 SS G_CDS: 0.33 Total: 34.84 kcal Atomic # 6 Polarization: -27.64 SS G_CDS: 4.15 Total: -23.49 kcal Atomic # 7 Polarization: -80.16 SS G_CDS: -1.86 Total: -82.01 kcal Atomic # 8 Polarization: -37.07 SS G_CDS: -0.53 Total: -37.60 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.38 kcal Total: -69.00 4.11 -64.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320343585.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.478 kcal (2) G-P(sol) polarization free energy of solvation -68.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds