Wall clock time and date at job start Tue Mar 31 2020 06:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53008 * 109.46920 * 2 1 4 4 H 1.08996 * 109.46740 * 54.97430 * 3 2 1 5 5 C 1.50696 * 109.46738 * 174.97658 * 3 2 1 6 6 H 1.07999 * 120.00062 * 114.27399 * 5 3 2 7 7 C 1.37873 * 120.00076 * 294.26727 * 5 3 2 8 8 N 1.31520 * 120.00233 * 164.28093 * 7 5 3 9 9 Si 1.86801 * 120.00178 * 344.28322 * 7 5 3 10 10 H 1.48492 * 109.47383 * 269.99726 * 9 7 5 11 11 H 1.48499 * 109.47236 * 29.99897 * 9 7 5 12 12 H 1.48508 * 109.47181 * 149.99557 * 9 7 5 13 13 N 1.46497 * 109.46697 * 294.97504 * 3 2 1 14 14 C 1.34773 * 120.00046 * 85.00429 * 13 3 2 15 15 O 1.21286 * 120.00359 * 359.97438 * 14 13 3 16 16 C 1.50705 * 120.00190 * 179.97438 * 14 13 3 17 17 C 1.53005 * 109.46764 * 299.99802 * 16 14 13 18 18 C 1.52995 * 109.47262 * 59.99398 * 16 14 13 19 19 O 1.42905 * 109.47174 * 180.02562 * 16 14 13 20 20 C 1.35901 * 117.00101 * 61.60460 * 19 16 14 21 21 C 1.38732 * 120.05551 * 353.59233 * 20 19 16 22 22 C 1.38144 * 119.94087 * 179.74530 * 21 20 19 23 23 C 1.38269 * 120.05555 * 0.50752 * 22 21 20 24 24 C 1.38269 * 120.11063 * 359.76792 * 23 22 21 25 25 C 1.38136 * 120.05432 * 359.97438 * 24 23 22 26 26 H 1.09000 * 109.46670 * 60.00657 * 1 2 3 27 27 H 1.09000 * 109.46916 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47086 * 300.00468 * 1 2 3 29 29 H 1.08997 * 109.47172 * 240.00013 * 2 1 3 30 30 H 1.09000 * 109.46670 * 119.99343 * 2 1 3 31 31 H 0.97003 * 119.99659 * 354.90272 * 8 7 5 32 32 H 0.96999 * 119.99801 * 264.99772 * 13 3 2 33 33 H 1.08994 * 109.47305 * 61.16939 * 17 16 14 34 34 H 1.09002 * 109.47314 * 181.17679 * 17 16 14 35 35 H 1.09004 * 109.46976 * 301.17127 * 17 16 14 36 36 H 1.09001 * 109.46620 * 64.32832 * 18 16 14 37 37 H 1.09000 * 109.46886 * 184.32282 * 18 16 14 38 38 H 1.08997 * 109.47387 * 304.33077 * 18 16 14 39 39 H 1.08000 * 120.02987 * 359.97438 * 21 20 19 40 40 H 1.07994 * 119.97289 * 180.27971 * 22 21 20 41 41 H 1.08001 * 119.94219 * 179.74393 * 23 22 21 42 42 H 1.07997 * 119.96824 * 179.97438 * 24 23 22 43 43 H 1.08004 * 120.02780 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6050 1.9817 0.8415 5 6 3.5419 1.4444 0.1244 6 1 4.1509 1.8044 -0.6916 7 6 4.1384 0.9864 1.2800 8 7 5.4209 0.6948 1.2870 9 14 3.1252 0.7800 2.8357 10 1 3.1542 2.0427 3.6165 11 1 1.7224 0.4542 2.4733 12 1 3.6935 -0.3213 3.6541 13 7 1.6529 2.0973 -1.2521 14 6 0.4357 2.6641 -1.3678 15 8 -0.3395 2.6319 -0.4355 16 6 0.0376 3.3381 -2.6556 17 6 1.0083 4.4828 -2.9533 18 6 0.0822 2.3217 -3.7982 19 8 -1.2876 3.8582 -2.5313 20 6 -1.4920 4.8049 -1.5780 21 6 -0.4752 5.1293 -0.6916 22 6 -0.6838 6.0958 0.2731 23 6 -1.9081 6.7321 0.3625 24 6 -2.9249 6.4065 -0.5161 25 6 -2.7196 5.4446 -1.4859 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8901 31 1 5.9309 0.7309 0.4627 32 1 2.2727 2.1228 -1.9978 33 1 2.0161 4.0840 -3.0685 34 1 0.7082 4.9836 -3.8737 35 1 0.9920 5.1965 -2.1295 36 1 -0.6638 1.5463 -3.6239 37 1 -0.1308 2.8254 -4.7411 38 1 1.0727 1.8691 -3.8436 39 1 0.4798 4.6294 -0.7582 40 1 0.1088 6.3519 0.9605 41 1 -2.0706 7.4845 1.1201 42 1 -3.8804 6.9047 -0.4439 43 1 -3.5143 5.1902 -2.1717 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320343586.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:41 Heat of formation + Delta-G solvation = -41.253902 kcal Electronic energy + Delta-G solvation = -24724.469304 eV Core-core repulsion = 21349.524439 eV Total energy + Delta-G solvation = -3374.944864 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.13116 -38.73853 -37.25070 -35.23597 -33.81460 -32.31297 -31.16836 -30.77655 -29.63519 -27.43523 -27.23165 -23.85418 -22.59526 -22.26035 -22.07237 -20.22652 -19.53586 -18.47613 -17.32435 -16.54640 -16.31495 -15.77701 -15.37182 -14.92495 -14.40479 -14.27565 -13.83997 -13.45623 -13.38005 -13.10607 -12.83175 -12.69277 -12.47458 -12.40973 -12.22561 -12.17327 -12.09600 -11.81266 -11.67288 -11.39903 -10.89191 -10.78910 -10.72985 -10.60291 -10.46923 -9.95734 -9.61814 -9.19478 -9.08372 -8.75027 -8.46187 -8.17859 -7.84315 -6.62256 -4.28334 1.55137 1.65049 2.98908 3.21980 3.37048 3.41954 3.55525 3.71469 3.99572 4.39061 4.67290 4.77468 5.01204 5.05419 5.06652 5.11316 5.27444 5.41068 5.42259 5.54897 5.56263 5.62799 5.69922 5.85009 5.96239 6.02901 6.04633 6.05948 6.17484 6.23426 6.49536 6.60911 6.64112 6.71675 6.74932 6.89729 6.91532 6.99568 7.28280 7.31467 7.52332 7.58869 8.17799 8.34121 8.61897 8.84536 9.40359 10.76805 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017774 B = 0.005546 C = 0.004976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.947447 B = 5047.660910 C = 5625.537913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.248 3.752 4 H 0.043 0.957 5 C -0.618 4.618 6 H 0.062 0.938 7 C 0.043 3.957 8 N -0.897 5.897 9 Si 1.033 2.967 10 H -0.284 1.284 11 H -0.265 1.265 12 H -0.284 1.284 13 N -0.694 5.694 14 C 0.479 3.521 15 O -0.526 6.526 16 C 0.094 3.906 17 C -0.194 4.194 18 C -0.135 4.135 19 O -0.291 6.291 20 C 0.145 3.855 21 C -0.177 4.177 22 C -0.088 4.088 23 C -0.162 4.162 24 C -0.092 4.092 25 C -0.158 4.158 26 H 0.047 0.953 27 H 0.030 0.970 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.270 0.730 32 H 0.392 0.608 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.134 0.866 40 H 0.121 0.879 41 H 0.118 0.882 42 H 0.123 0.877 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.673 8.119 -8.660 16.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.170 4.170 3 C 0.144 3.856 4 H 0.061 0.939 5 C -0.655 4.655 6 H 0.080 0.920 7 C -0.164 4.164 8 N -0.530 5.530 9 Si 0.860 3.140 10 H -0.210 1.210 11 H -0.190 1.190 12 H -0.209 1.209 13 N -0.344 5.344 14 C 0.263 3.737 15 O -0.404 6.404 16 C 0.052 3.948 17 C -0.251 4.251 18 C -0.192 4.192 19 O -0.204 6.204 20 C 0.100 3.900 21 C -0.195 4.195 22 C -0.106 4.106 23 C -0.180 4.180 24 C -0.110 4.110 25 C -0.177 4.177 26 H 0.066 0.934 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.225 0.775 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.152 0.848 40 H 0.139 0.861 41 H 0.136 0.864 42 H 0.141 0.859 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.231 7.583 -6.510 15.795 hybrid contribution 0.536 0.315 -1.827 1.929 sum -11.695 7.897 -8.336 16.390 Atomic orbital electron populations 1.21883 0.97296 0.98892 1.01997 1.22267 0.93828 0.99665 1.01262 1.19133 0.95727 0.88547 0.82148 0.93881 1.22074 0.89545 1.48909 1.05004 0.92006 1.25635 0.96901 0.92311 1.01526 1.70832 1.08114 1.42694 1.31346 0.84242 0.76345 0.77531 0.75833 1.21040 1.19002 1.20930 1.46318 1.14326 1.55512 1.18245 1.20768 0.83406 0.80136 0.89390 1.90777 1.50929 1.59011 1.39657 1.21831 0.82628 0.95066 0.95321 1.22802 0.99512 0.98626 1.04175 1.21772 1.03751 0.97688 0.95985 1.86118 1.29363 1.52693 1.52214 1.18808 0.94285 0.88355 0.88598 1.21622 1.00154 1.00265 0.97457 1.20966 0.97296 0.95234 0.97099 1.20970 0.93869 1.02303 1.00856 1.20818 0.98759 0.96771 0.94631 1.20310 0.95599 0.99593 1.02184 0.93359 0.95098 0.92935 0.93130 0.91909 0.91999 0.77483 0.90117 0.90585 0.89795 0.90913 0.90650 0.89812 0.84843 0.86117 0.86407 0.85914 0.85763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 8.52 37.16 0.32 -2.59 16 2 C -0.13 -2.87 4.93 -26.72 -0.13 -3.00 16 3 C 0.25 5.68 1.79 -69.08 -0.12 5.56 16 4 H 0.04 1.09 6.18 -51.93 -0.32 0.77 16 5 C -0.62 -16.06 9.01 -34.44 -0.31 -16.37 16 6 H 0.06 1.67 7.96 -52.49 -0.42 1.26 16 7 C 0.04 1.18 5.33 -17.82 -0.09 1.09 16 8 N -0.90 -26.19 13.70 55.43 0.76 -25.43 16 9 Si 1.03 24.66 26.19 -169.99 -4.45 20.21 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.26 -6.00 5.56 56.52 0.31 -5.69 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 N -0.69 -13.19 4.79 -54.93 -0.26 -13.45 16 14 C 0.48 8.77 3.15 -10.98 -0.03 8.74 16 15 O -0.53 -11.39 11.01 -14.36 -0.16 -11.55 16 16 C 0.09 1.37 0.96 -91.77 -0.09 1.28 16 17 C -0.19 -2.42 8.06 37.16 0.30 -2.12 16 18 C -0.13 -1.57 8.78 37.16 0.33 -1.25 16 19 O -0.29 -4.71 9.62 -39.34 -0.38 -5.09 16 20 C 0.14 2.37 5.58 -39.22 -0.22 2.15 16 21 C -0.18 -2.97 5.70 -39.43 -0.22 -3.20 16 22 C -0.09 -1.33 10.04 -39.60 -0.40 -1.73 16 23 C -0.16 -2.14 10.04 -39.56 -0.40 -2.53 16 24 C -0.09 -1.17 10.04 -39.61 -0.40 -1.56 16 25 C -0.16 -2.27 9.99 -39.44 -0.39 -2.66 16 26 H 0.05 0.97 5.64 -51.93 -0.29 0.68 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 1.13 7.85 -51.93 -0.41 0.72 16 29 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.06 1.42 5.11 -51.93 -0.27 1.16 16 31 H 0.27 7.77 8.73 -40.82 -0.36 7.42 16 32 H 0.39 6.57 7.33 -40.82 -0.30 6.27 16 33 H 0.08 0.91 7.60 -51.93 -0.39 0.52 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.08 1.15 4.69 -51.93 -0.24 0.90 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.87 7.44 -51.93 -0.39 0.49 16 39 H 0.13 2.39 3.64 -52.49 -0.19 2.20 16 40 H 0.12 1.66 8.06 -52.49 -0.42 1.23 16 41 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 42 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 43 H 0.12 1.55 8.06 -52.48 -0.42 1.12 16 LS Contribution 332.11 15.07 5.00 5.00 Total: -1.00 -30.91 332.11 -7.62 -38.54 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -6.26 Total: 9.96 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: -1.87 Total: -18.19 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.50 Total: -38.88 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.54 Total: -16.64 kcal Atomic # 14 Polarization: 24.66 SS G_CDS: -4.45 Total: 20.21 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.91 -7.62 -38.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320343586.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.718 kcal (2) G-P(sol) polarization free energy of solvation -30.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds