Wall clock time and date at job start Tue Mar 31 2020 06:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53008 * 109.46920 * 2 1 4 4 H 1.08996 * 109.46740 * 54.97430 * 3 2 1 5 5 C 1.50696 * 109.46738 * 174.97658 * 3 2 1 6 6 H 1.07999 * 120.00062 * 114.27399 * 5 3 2 7 7 C 1.37873 * 120.00076 * 294.26727 * 5 3 2 8 8 N 1.31520 * 120.00233 * 164.28093 * 7 5 3 9 9 Si 1.86801 * 120.00178 * 344.28322 * 7 5 3 10 10 H 1.48492 * 109.47383 * 269.99726 * 9 7 5 11 11 H 1.48499 * 109.47236 * 29.99897 * 9 7 5 12 12 H 1.48508 * 109.47181 * 149.99557 * 9 7 5 13 13 N 1.46497 * 109.46697 * 294.97504 * 3 2 1 14 14 C 1.34773 * 120.00046 * 85.00429 * 13 3 2 15 15 O 1.21286 * 120.00359 * 359.97438 * 14 13 3 16 16 C 1.50705 * 120.00190 * 179.97438 * 14 13 3 17 17 C 1.53005 * 109.46764 * 299.99802 * 16 14 13 18 18 C 1.52995 * 109.47262 * 59.99398 * 16 14 13 19 19 O 1.42905 * 109.47174 * 180.02562 * 16 14 13 20 20 C 1.35901 * 117.00101 * 61.60460 * 19 16 14 21 21 C 1.38732 * 120.05551 * 353.59233 * 20 19 16 22 22 C 1.38144 * 119.94087 * 179.74530 * 21 20 19 23 23 C 1.38269 * 120.05555 * 0.50752 * 22 21 20 24 24 C 1.38269 * 120.11063 * 359.76792 * 23 22 21 25 25 C 1.38136 * 120.05432 * 359.97438 * 24 23 22 26 26 H 1.09000 * 109.46670 * 60.00657 * 1 2 3 27 27 H 1.09000 * 109.46916 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47086 * 300.00468 * 1 2 3 29 29 H 1.08997 * 109.47172 * 240.00013 * 2 1 3 30 30 H 1.09000 * 109.46670 * 119.99343 * 2 1 3 31 31 H 0.97003 * 119.99659 * 354.90272 * 8 7 5 32 32 H 0.96999 * 119.99801 * 264.99772 * 13 3 2 33 33 H 1.08994 * 109.47305 * 61.16939 * 17 16 14 34 34 H 1.09002 * 109.47314 * 181.17679 * 17 16 14 35 35 H 1.09004 * 109.46976 * 301.17127 * 17 16 14 36 36 H 1.09001 * 109.46620 * 64.32832 * 18 16 14 37 37 H 1.09000 * 109.46886 * 184.32282 * 18 16 14 38 38 H 1.08997 * 109.47387 * 304.33077 * 18 16 14 39 39 H 1.08000 * 120.02987 * 359.97438 * 21 20 19 40 40 H 1.07994 * 119.97289 * 180.27971 * 22 21 20 41 41 H 1.08001 * 119.94219 * 179.74393 * 23 22 21 42 42 H 1.07997 * 119.96824 * 179.97438 * 24 23 22 43 43 H 1.08004 * 120.02780 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6050 1.9817 0.8415 5 6 3.5419 1.4444 0.1244 6 1 4.1509 1.8044 -0.6916 7 6 4.1384 0.9864 1.2800 8 7 5.4209 0.6948 1.2870 9 14 3.1252 0.7800 2.8357 10 1 3.1542 2.0427 3.6165 11 1 1.7224 0.4542 2.4733 12 1 3.6935 -0.3213 3.6541 13 7 1.6529 2.0973 -1.2521 14 6 0.4357 2.6641 -1.3678 15 8 -0.3395 2.6319 -0.4355 16 6 0.0376 3.3381 -2.6556 17 6 1.0083 4.4828 -2.9533 18 6 0.0822 2.3217 -3.7982 19 8 -1.2876 3.8582 -2.5313 20 6 -1.4920 4.8049 -1.5780 21 6 -0.4752 5.1293 -0.6916 22 6 -0.6838 6.0958 0.2731 23 6 -1.9081 6.7321 0.3625 24 6 -2.9249 6.4065 -0.5161 25 6 -2.7196 5.4446 -1.4859 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8901 31 1 5.9309 0.7309 0.4627 32 1 2.2727 2.1228 -1.9978 33 1 2.0161 4.0840 -3.0685 34 1 0.7082 4.9836 -3.8737 35 1 0.9920 5.1965 -2.1295 36 1 -0.6638 1.5463 -3.6239 37 1 -0.1308 2.8254 -4.7411 38 1 1.0727 1.8691 -3.8436 39 1 0.4798 4.6294 -0.7582 40 1 0.1088 6.3519 0.9605 41 1 -2.0706 7.4845 1.1201 42 1 -3.8804 6.9047 -0.4439 43 1 -3.5143 5.1902 -2.1717 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320343586.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:40 Heat of formation + Delta-G solvation = -60.124590 kcal Electronic energy + Delta-G solvation = -24725.287598 eV Core-core repulsion = 21349.524439 eV Total energy + Delta-G solvation = -3375.763159 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.39077 -40.08712 -38.45379 -36.96062 -35.11719 -34.25694 -32.70469 -31.88038 -30.74122 -29.13004 -28.36787 -25.15887 -24.30560 -23.46430 -23.35176 -21.77669 -21.08871 -20.07585 -18.98710 -17.75060 -17.65795 -17.18314 -16.64943 -16.29439 -15.88362 -15.51097 -15.22227 -14.93540 -14.68634 -14.56669 -14.41207 -14.20604 -13.99110 -13.60784 -13.54824 -13.35831 -13.20182 -13.11796 -12.88526 -12.71305 -12.55325 -12.42764 -12.34172 -11.90564 -11.78330 -11.66781 -11.41158 -11.10229 -10.63260 -10.56917 -9.94572 -9.74604 -9.03496 -8.78393 -6.45428 0.44607 0.54449 1.44492 1.45895 1.59925 1.66455 2.06005 2.31546 2.40193 2.88664 2.99123 3.62703 3.66339 3.71004 3.95883 4.00005 4.27270 4.28236 4.36416 4.38866 4.49561 4.52181 4.53856 4.56968 4.66012 4.69121 4.81785 4.84971 5.02462 5.05478 5.08194 5.11316 5.17965 5.25876 5.41235 5.51689 5.52259 5.59859 5.62950 5.64962 5.86674 6.00985 6.37581 6.52145 6.76285 7.24759 7.35930 8.58905 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017774 B = 0.005546 C = 0.004976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.947447 B = 5047.660910 C = 5625.537913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.129 4.129 3 C 0.254 3.746 4 H 0.020 0.980 5 C -0.609 4.609 6 H 0.044 0.956 7 C 0.001 3.999 8 N -0.929 5.929 9 Si 1.065 2.935 10 H -0.280 1.280 11 H -0.250 1.250 12 H -0.280 1.280 13 N -0.694 5.694 14 C 0.481 3.519 15 O -0.560 6.560 16 C 0.097 3.903 17 C -0.190 4.190 18 C -0.133 4.133 19 O -0.299 6.299 20 C 0.122 3.878 21 C -0.197 4.197 22 C -0.107 4.107 23 C -0.160 4.160 24 C -0.086 4.086 25 C -0.166 4.166 26 H 0.047 0.953 27 H 0.055 0.945 28 H 0.034 0.966 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.261 0.739 32 H 0.403 0.597 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.114 0.886 40 H 0.124 0.876 41 H 0.147 0.853 42 H 0.160 0.840 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.827 8.852 -9.582 19.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.168 4.168 3 C 0.149 3.851 4 H 0.038 0.962 5 C -0.647 4.647 6 H 0.062 0.938 7 C -0.201 4.201 8 N -0.564 5.564 9 Si 0.888 3.112 10 H -0.206 1.206 11 H -0.174 1.174 12 H -0.206 1.206 13 N -0.344 5.344 14 C 0.267 3.733 15 O -0.440 6.440 16 C 0.056 3.944 17 C -0.247 4.247 18 C -0.190 4.190 19 O -0.212 6.212 20 C 0.077 3.923 21 C -0.216 4.216 22 C -0.126 4.126 23 C -0.178 4.178 24 C -0.104 4.104 25 C -0.185 4.185 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.238 0.762 33 H 0.109 0.891 34 H 0.118 0.882 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.121 0.879 38 H 0.114 0.886 39 H 0.132 0.868 40 H 0.142 0.858 41 H 0.164 0.836 42 H 0.178 0.822 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -14.390 8.330 -7.468 18.227 hybrid contribution 1.174 0.182 -1.579 1.976 sum -13.216 8.512 -9.047 18.137 Atomic orbital electron populations 1.21742 0.95819 1.00204 1.01098 1.22178 0.95043 0.98432 1.01176 1.18786 0.93436 0.89530 0.83326 0.96174 1.22241 0.91253 1.47142 1.04036 0.93790 1.26641 0.97034 0.92174 1.04213 1.70922 1.09147 1.45352 1.30956 0.83821 0.76129 0.77740 0.73507 1.20584 1.17378 1.20569 1.46103 1.15229 1.55776 1.17315 1.21442 0.82331 0.79079 0.90438 1.90751 1.51820 1.60075 1.41320 1.21967 0.82678 0.95988 0.93796 1.22788 0.99546 0.97714 1.04638 1.21863 1.04325 0.96942 0.95879 1.86104 1.30059 1.52854 1.52222 1.19086 0.95072 0.89081 0.89023 1.21566 0.99813 1.01361 0.98846 1.21195 0.98654 0.95576 0.97128 1.21336 0.92979 1.02180 1.01308 1.21278 1.00024 0.95802 0.93263 1.20695 0.95245 0.99627 1.02901 0.93428 0.92586 0.94658 0.92347 0.92868 0.93012 0.76218 0.89100 0.88230 0.91328 0.91634 0.87907 0.88584 0.86823 0.85790 0.83569 0.82237 0.84030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.16 8.52 71.98 0.61 -4.55 16 2 C -0.13 -5.55 4.93 30.60 0.15 -5.40 16 3 C 0.25 11.68 1.79 44.25 0.08 11.76 16 4 H 0.02 1.04 6.18 -2.39 -0.01 1.03 16 5 C -0.61 -32.09 9.01 25.60 0.23 -31.86 16 6 H 0.04 2.43 7.96 -2.91 -0.02 2.41 16 7 C 0.00 0.03 5.33 84.65 0.45 0.49 16 8 N -0.93 -55.27 13.70 21.45 0.29 -54.98 16 9 Si 1.07 50.16 26.19 68.60 1.80 51.96 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 11 H -0.25 -11.04 5.56 99.48 0.55 -10.49 16 12 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 13 N -0.69 -26.23 4.79 -446.09 -2.13 -28.36 16 14 C 0.48 17.50 3.15 87.66 0.28 17.78 16 15 O -0.56 -24.43 11.01 15.99 0.18 -24.25 16 16 C 0.10 2.74 0.96 -11.54 -0.01 2.73 16 17 C -0.19 -4.51 8.06 71.98 0.58 -3.93 16 18 C -0.13 -2.81 8.78 71.98 0.63 -2.18 16 19 O -0.30 -9.37 9.62 -73.39 -0.71 -10.08 16 20 C 0.12 3.91 5.58 22.51 0.13 4.04 16 21 C -0.20 -6.68 5.70 22.37 0.13 -6.55 16 22 C -0.11 -3.21 10.04 22.25 0.22 -2.99 16 23 C -0.16 -3.88 10.04 22.28 0.22 -3.66 16 24 C -0.09 -1.94 10.04 22.25 0.22 -1.71 16 25 C -0.17 -4.44 9.99 22.36 0.22 -4.21 16 26 H 0.05 1.86 5.64 -2.39 -0.01 1.84 16 27 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.03 1.49 7.85 -2.39 -0.02 1.47 16 29 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.05 2.37 5.11 -2.39 -0.01 2.36 16 31 H 0.26 15.45 8.73 -92.71 -0.81 14.64 16 32 H 0.40 13.31 7.33 -92.71 -0.68 12.63 16 33 H 0.09 1.93 7.60 -2.39 -0.02 1.91 16 34 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.07 1.88 4.69 -2.39 -0.01 1.87 16 36 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.10 1.78 7.44 -2.39 -0.02 1.76 16 39 H 0.11 4.20 3.64 -2.91 -0.01 4.19 16 40 H 0.12 3.45 8.06 -2.91 -0.02 3.42 16 41 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 42 H 0.16 2.37 8.06 -2.91 -0.02 2.34 16 43 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -67.80 332.11 3.72 -64.08 By element: Atomic # 1 Polarization: 31.73 SS G_CDS: 0.15 Total: 31.88 kcal Atomic # 6 Polarization: -34.39 SS G_CDS: 4.15 Total: -30.24 kcal Atomic # 7 Polarization: -81.50 SS G_CDS: -1.84 Total: -83.34 kcal Atomic # 8 Polarization: -33.80 SS G_CDS: -0.53 Total: -34.33 kcal Atomic # 14 Polarization: 50.16 SS G_CDS: 1.80 Total: 51.96 kcal Total: -67.80 3.72 -64.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320343586.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.954 kcal (2) G-P(sol) polarization free energy of solvation -67.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds