Wall clock time and date at job start Tue Mar 31 2020 07:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47122 * 2 1 4 4 O 1.42894 * 109.47440 * 120.00364 * 2 1 3 5 5 C 1.42904 * 114.00423 * 150.00025 * 4 2 1 6 6 C 1.53774 * 113.61445 * 209.99588 * 5 4 2 7 7 C 1.53773 * 87.08414 * 220.01759 * 6 5 4 8 8 N 1.46497 * 113.61757 * 139.98201 * 7 6 5 9 9 C 1.39789 * 120.00165 * 156.53074 * 8 7 6 10 10 C 1.38945 * 120.00356 * 180.02562 * 9 8 7 11 11 C 1.38013 * 119.98987 * 179.97438 * 10 9 8 12 12 C 1.38902 * 120.00970 * 359.97058 * 11 10 9 13 13 O 1.35791 * 119.99602 * 180.02562 * 12 11 10 14 14 C 1.34814 * 117.00275 * 5.54237 * 13 12 11 15 15 H 1.08001 * 119.99433 * 354.94541 * 14 13 12 16 16 C 1.38623 * 120.00152 * 174.94460 * 14 13 12 17 17 N 1.31580 * 119.99790 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99810 * 359.97438 * 16 14 13 19 19 H 1.48494 * 109.47073 * 90.00490 * 18 16 14 20 20 H 1.48497 * 109.46725 * 210.00116 * 18 16 14 21 21 H 1.48495 * 109.47445 * 330.00022 * 18 16 14 22 22 C 1.38899 * 120.00547 * 0.28614 * 12 11 10 23 23 C 1.38007 * 120.00976 * 359.48072 * 22 12 11 24 24 C 1.53781 * 87.17198 * 25.39329 * 7 6 5 25 25 H 1.09005 * 109.47013 * 299.99518 * 1 2 3 26 26 H 1.09000 * 109.47630 * 59.99931 * 1 2 3 27 27 H 1.09003 * 109.46970 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46797 * 240.00207 * 2 1 3 29 29 H 1.09001 * 109.47532 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47029 * 300.00020 * 3 2 1 31 31 H 1.08996 * 109.47096 * 59.99853 * 3 2 1 32 32 H 1.08994 * 112.84407 * 341.19522 * 5 4 2 33 33 H 1.09000 * 113.61313 * 105.46854 * 6 5 4 34 34 H 1.08997 * 113.61889 * 334.56887 * 6 5 4 35 35 H 1.08999 * 113.61768 * 270.80718 * 7 6 5 36 36 H 0.97001 * 120.00301 * 336.53241 * 8 7 6 37 37 H 1.07999 * 120.00813 * 359.97438 * 10 9 8 38 38 H 1.08006 * 119.99563 * 180.02562 * 11 10 9 39 39 H 0.96996 * 119.99760 * 179.97438 * 17 16 14 40 40 H 1.08002 * 119.99383 * 179.74321 * 22 12 11 41 41 H 1.08001 * 120.00378 * 180.22691 * 23 22 12 42 42 H 1.09004 * 113.61441 * 89.15955 * 24 7 6 43 43 H 1.09001 * 113.61460 * 220.06388 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2660 -1.3245 0.9885 6 6 3.4433 -2.5743 1.8667 7 6 4.8961 -2.1194 2.0839 8 7 5.3734 -2.3146 3.4551 9 6 6.7436 -2.4256 3.7090 10 6 7.1963 -2.6113 5.0095 11 6 8.5491 -2.7214 5.2598 12 6 9.4578 -2.6471 4.2120 13 8 10.7887 -2.7560 4.4585 14 6 11.1551 -3.0491 5.7224 15 1 10.4093 -3.1055 6.5015 16 6 12.4891 -3.2781 6.0219 17 7 12.8465 -3.5647 7.2554 18 14 13.7789 -3.1813 4.6742 19 1 14.2953 -1.7921 4.5822 20 1 14.8972 -4.1051 4.9922 21 1 13.1695 -3.5698 3.3770 22 6 9.0057 -2.4562 2.9126 23 6 7.6528 -2.3509 2.6610 24 6 4.4103 -0.6885 1.7986 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8932 -0.5138 -0.8900 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 3.5127 -1.4892 -0.0603 33 1 3.3568 -3.5109 1.3158 34 1 2.8406 -2.5591 2.7747 35 1 5.5900 -2.5022 1.3356 36 1 4.7388 -2.3669 4.1868 37 1 6.4898 -2.6695 5.8242 38 1 8.9011 -2.8662 6.2706 39 1 13.7799 -3.7253 7.4649 40 1 9.7127 -2.3943 2.0985 41 1 7.3011 -2.2060 1.6502 42 1 4.0725 -0.1566 2.6881 43 1 5.1034 -0.1047 1.1928 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320594829.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:10 Heat of formation + Delta-G solvation = -24.667518 kcal Electronic energy + Delta-G solvation = -22247.764830 eV Core-core repulsion = 18873.539206 eV Total energy + Delta-G solvation = -3374.225624 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -39.98926 -39.00090 -37.60437 -36.39698 -33.34487 -32.31345 -31.91485 -30.24861 -27.66451 -27.46380 -25.84174 -25.18268 -23.75538 -22.19217 -21.70082 -20.68064 -19.78817 -17.77059 -17.51606 -17.06829 -16.44784 -15.83304 -15.40667 -15.04756 -14.60729 -14.35626 -13.79411 -13.78502 -13.60960 -13.18519 -13.16108 -12.72358 -12.68972 -12.60215 -12.58683 -12.24982 -12.21911 -12.08028 -11.64621 -11.58178 -11.32547 -11.05845 -10.94840 -10.86662 -10.75153 -10.54206 -10.07928 -9.67586 -9.28015 -9.18313 -8.53228 -8.24357 -6.49178 -6.29473 -3.93918 2.12703 2.47023 3.29297 3.29850 3.31934 3.47347 3.92526 4.33372 4.35725 4.38296 4.55236 4.58435 4.64585 4.73832 4.82436 4.83750 4.99809 5.10485 5.22725 5.22982 5.35677 5.43642 5.46289 5.55992 5.59302 5.60812 5.68001 5.77473 5.79107 5.86811 5.90726 5.99260 6.16106 6.21666 6.44523 6.79207 6.84337 7.01302 7.06718 7.35868 7.49836 7.80615 7.94201 8.11154 8.22581 9.07030 9.73175 10.79063 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.044104 B = 0.002428 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.708018 B =11527.820466 C =11821.179004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.079 3.921 3 C -0.175 4.175 4 O -0.367 6.367 5 C 0.064 3.936 6 C -0.145 4.145 7 C 0.142 3.858 8 N -0.743 5.743 9 C 0.132 3.868 10 C -0.143 4.143 11 C -0.176 4.176 12 C 0.117 3.883 13 O -0.228 6.228 14 C -0.383 4.383 15 H 0.103 0.897 16 C 0.059 3.941 17 N -0.888 5.888 18 Si 0.906 3.094 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.261 1.261 22 C -0.149 4.149 23 C -0.150 4.150 24 C -0.172 4.172 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.393 0.607 37 H 0.109 0.891 38 H 0.134 0.866 39 H 0.277 0.723 40 H 0.116 0.884 41 H 0.112 0.888 42 H 0.091 0.909 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.040 5.556 -14.857 27.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.022 3.978 3 C -0.233 4.233 4 O -0.286 6.286 5 C 0.005 3.995 6 C -0.184 4.184 7 C 0.035 3.965 8 N -0.377 5.377 9 C 0.033 3.967 10 C -0.165 4.165 11 C -0.195 4.195 12 C 0.066 3.934 13 O -0.135 6.135 14 C -0.460 4.460 15 H 0.121 0.879 16 C -0.143 4.143 17 N -0.527 5.527 18 Si 0.732 3.268 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.185 1.185 22 C -0.169 4.169 23 C -0.172 4.172 24 C -0.212 4.212 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.111 0.889 35 H 0.121 0.879 36 H 0.227 0.773 37 H 0.127 0.873 38 H 0.151 0.849 39 H 0.087 0.913 40 H 0.134 0.866 41 H 0.130 0.870 42 H 0.110 0.890 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -21.731 5.535 -14.859 26.901 hybrid contribution 0.481 0.078 -0.227 0.537 sum -21.251 5.614 -15.086 26.659 Atomic orbital electron populations 1.21877 0.93828 1.02628 1.02459 1.22162 0.94864 0.92697 0.88099 1.22326 1.01779 0.96757 1.02405 1.87977 1.36139 1.69203 1.35250 1.23585 0.83891 0.93708 0.98275 1.23619 0.96708 0.97209 1.00814 1.21865 0.93680 0.94794 0.86199 1.44175 1.03592 1.83708 1.06186 1.17477 0.83424 1.02318 0.93434 1.20297 0.95334 1.06711 0.94203 1.21115 0.92222 1.06120 1.00085 1.18966 0.84111 0.97399 0.92946 1.83569 1.18216 1.79910 1.31768 1.20706 0.94873 1.48009 0.82372 0.87948 1.24432 0.97054 0.95918 0.96889 1.69663 1.18443 1.46712 1.17892 0.86174 0.80085 0.78229 0.82339 1.20087 1.21058 1.18467 1.20009 0.94702 1.07791 0.94418 1.20171 0.91899 1.08124 0.97002 1.24170 0.97266 0.98675 1.01097 0.91821 0.91385 0.92052 0.92296 0.92278 0.91897 0.91827 0.89538 0.90646 0.88935 0.87871 0.77261 0.87325 0.84883 0.91327 0.86582 0.86987 0.89049 0.91279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.56 37.16 0.36 -0.60 16 2 C 0.08 0.60 3.33 -26.73 -0.09 0.51 16 3 C -0.18 -1.23 9.53 37.16 0.35 -0.88 16 4 O -0.37 -3.60 10.00 -35.23 -0.35 -3.95 16 5 C 0.06 0.56 4.27 -25.83 -0.11 0.45 16 6 C -0.15 -1.31 7.66 -25.93 -0.20 -1.51 16 7 C 0.14 1.51 4.00 -67.12 -0.27 1.24 16 8 N -0.74 -9.62 5.54 -51.34 -0.28 -9.91 16 9 C 0.13 2.19 6.66 -83.70 -0.56 1.63 16 10 C -0.14 -2.62 9.89 -39.40 -0.39 -3.01 16 11 C -0.18 -3.84 9.16 -39.42 -0.36 -4.20 16 12 C 0.12 2.74 6.65 -39.09 -0.26 2.48 16 13 O -0.23 -6.15 8.58 -0.03 0.00 -6.15 16 14 C -0.38 -11.04 9.94 30.87 0.31 -10.73 16 15 H 0.10 3.00 5.43 -52.49 -0.28 2.72 16 16 C 0.06 1.69 5.49 -17.52 -0.10 1.59 16 17 N -0.89 -26.23 13.96 55.48 0.77 -25.45 16 18 Si 0.91 22.22 28.62 -169.99 -4.86 17.35 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 21 H -0.26 -6.40 7.11 56.52 0.40 -6.00 16 22 C -0.15 -2.99 9.98 -39.42 -0.39 -3.38 16 23 C -0.15 -2.56 9.25 -39.40 -0.36 -2.93 16 24 C -0.17 -1.73 7.73 -25.83 -0.20 -1.93 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.38 7.42 -51.93 -0.39 0.00 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.63 7.45 -51.93 -0.39 0.25 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 0.87 8.11 -51.93 -0.42 0.45 16 35 H 0.10 1.09 6.20 -51.93 -0.32 0.77 16 36 H 0.39 4.59 8.72 -40.82 -0.36 4.23 16 37 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.13 3.06 5.63 -52.48 -0.30 2.77 16 39 H 0.28 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.12 2.16 8.06 -52.49 -0.42 1.74 16 41 H 0.11 1.59 6.08 -52.49 -0.32 1.27 16 42 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 353.88 15.07 5.33 5.33 Total: -1.00 -30.73 353.88 -8.22 -38.95 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -6.56 Total: 5.09 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: -2.27 Total: -21.26 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.49 Total: -35.36 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: -0.35 Total: -10.11 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.86 Total: 17.35 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.73 -8.22 -38.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320594829.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.282 kcal (2) G-P(sol) polarization free energy of solvation -30.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds