Wall clock time and date at job start Tue Mar 31 2020 07:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47122 * 2 1 4 4 O 1.42894 * 109.47440 * 120.00364 * 2 1 3 5 5 C 1.42904 * 114.00423 * 150.00025 * 4 2 1 6 6 C 1.53774 * 113.61445 * 209.99588 * 5 4 2 7 7 C 1.53773 * 87.08414 * 220.01759 * 6 5 4 8 8 N 1.46497 * 113.61757 * 139.98201 * 7 6 5 9 9 C 1.39789 * 120.00165 * 156.53074 * 8 7 6 10 10 C 1.38945 * 120.00356 * 180.02562 * 9 8 7 11 11 C 1.38013 * 119.98987 * 179.97438 * 10 9 8 12 12 C 1.38902 * 120.00970 * 359.97058 * 11 10 9 13 13 O 1.35791 * 119.99602 * 180.02562 * 12 11 10 14 14 C 1.34814 * 117.00275 * 5.54237 * 13 12 11 15 15 H 1.08001 * 119.99433 * 354.94541 * 14 13 12 16 16 C 1.38623 * 120.00152 * 174.94460 * 14 13 12 17 17 N 1.31580 * 119.99790 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99810 * 359.97438 * 16 14 13 19 19 H 1.48494 * 109.47073 * 90.00490 * 18 16 14 20 20 H 1.48497 * 109.46725 * 210.00116 * 18 16 14 21 21 H 1.48495 * 109.47445 * 330.00022 * 18 16 14 22 22 C 1.38899 * 120.00547 * 0.28614 * 12 11 10 23 23 C 1.38007 * 120.00976 * 359.48072 * 22 12 11 24 24 C 1.53781 * 87.17198 * 25.39329 * 7 6 5 25 25 H 1.09005 * 109.47013 * 299.99518 * 1 2 3 26 26 H 1.09000 * 109.47630 * 59.99931 * 1 2 3 27 27 H 1.09003 * 109.46970 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46797 * 240.00207 * 2 1 3 29 29 H 1.09001 * 109.47532 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47029 * 300.00020 * 3 2 1 31 31 H 1.08996 * 109.47096 * 59.99853 * 3 2 1 32 32 H 1.08994 * 112.84407 * 341.19522 * 5 4 2 33 33 H 1.09000 * 113.61313 * 105.46854 * 6 5 4 34 34 H 1.08997 * 113.61889 * 334.56887 * 6 5 4 35 35 H 1.08999 * 113.61768 * 270.80718 * 7 6 5 36 36 H 0.97001 * 120.00301 * 336.53241 * 8 7 6 37 37 H 1.07999 * 120.00813 * 359.97438 * 10 9 8 38 38 H 1.08006 * 119.99563 * 180.02562 * 11 10 9 39 39 H 0.96996 * 119.99760 * 179.97438 * 17 16 14 40 40 H 1.08002 * 119.99383 * 179.74321 * 22 12 11 41 41 H 1.08001 * 120.00378 * 180.22691 * 23 22 12 42 42 H 1.09004 * 113.61441 * 89.15955 * 24 7 6 43 43 H 1.09001 * 113.61460 * 220.06388 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2660 -1.3245 0.9885 6 6 3.4433 -2.5743 1.8667 7 6 4.8961 -2.1194 2.0839 8 7 5.3734 -2.3146 3.4551 9 6 6.7436 -2.4256 3.7090 10 6 7.1963 -2.6113 5.0095 11 6 8.5491 -2.7214 5.2598 12 6 9.4578 -2.6471 4.2120 13 8 10.7887 -2.7560 4.4585 14 6 11.1551 -3.0491 5.7224 15 1 10.4093 -3.1055 6.5015 16 6 12.4891 -3.2781 6.0219 17 7 12.8465 -3.5647 7.2554 18 14 13.7789 -3.1813 4.6742 19 1 14.2953 -1.7921 4.5822 20 1 14.8972 -4.1051 4.9922 21 1 13.1695 -3.5698 3.3770 22 6 9.0057 -2.4562 2.9126 23 6 7.6528 -2.3509 2.6610 24 6 4.4103 -0.6885 1.7986 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8932 -0.5138 -0.8900 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 3.5127 -1.4892 -0.0603 33 1 3.3568 -3.5109 1.3158 34 1 2.8406 -2.5591 2.7747 35 1 5.5900 -2.5022 1.3356 36 1 4.7388 -2.3669 4.1868 37 1 6.4898 -2.6695 5.8242 38 1 8.9011 -2.8662 6.2706 39 1 13.7799 -3.7253 7.4649 40 1 9.7127 -2.3943 2.0985 41 1 7.3011 -2.2060 1.6502 42 1 4.0725 -0.1566 2.6881 43 1 5.1034 -0.1047 1.1928 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320594829.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:09 Heat of formation + Delta-G solvation = -43.196480 kcal Electronic energy + Delta-G solvation = -22248.568306 eV Core-core repulsion = 18873.539206 eV Total energy + Delta-G solvation = -3375.029101 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.01712 -40.41248 -38.79733 -37.59368 -34.66977 -34.08036 -32.84208 -31.79829 -29.05658 -28.10306 -27.02727 -26.59219 -24.89791 -23.62970 -22.36413 -22.08613 -20.76380 -19.55589 -19.11853 -18.12196 -17.72210 -16.74520 -16.53484 -16.05675 -15.75573 -15.57808 -15.46049 -15.26300 -15.03545 -14.36799 -14.15443 -14.11308 -13.96195 -13.77028 -13.38392 -13.36090 -13.27280 -13.05114 -12.97230 -12.77221 -12.45909 -12.39346 -12.04607 -11.86010 -11.76766 -11.68246 -11.51544 -11.18499 -10.94212 -10.35799 -10.21715 -9.79562 -8.42638 -7.96806 -6.10444 0.56988 0.88444 1.33954 1.39245 1.55171 2.33436 2.48949 2.84628 2.98849 3.16215 3.31157 3.61637 3.68529 3.91626 3.98054 4.03689 4.12461 4.16207 4.20925 4.32532 4.43315 4.57620 4.61390 4.75500 4.77554 4.84492 4.87462 4.90947 4.94297 4.96740 5.05810 5.12941 5.15322 5.24654 5.31553 5.34807 5.38477 5.49710 5.63762 5.84660 5.87509 6.15960 6.45052 6.63462 6.92911 6.99707 7.73305 8.69712 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.044104 B = 0.002428 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.708018 B =11527.820466 C =11821.179004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.072 3.928 3 C -0.173 4.173 4 O -0.387 6.387 5 C 0.069 3.931 6 C -0.138 4.138 7 C 0.133 3.867 8 N -0.733 5.733 9 C 0.160 3.840 10 C -0.153 4.153 11 C -0.188 4.188 12 C 0.065 3.935 13 O -0.254 6.254 14 C -0.390 4.390 15 H 0.077 0.923 16 C 0.002 3.998 17 N -0.931 5.931 18 Si 0.973 3.027 19 H -0.267 1.267 20 H -0.270 1.270 21 H -0.262 1.262 22 C -0.141 4.141 23 C -0.146 4.146 24 C -0.171 4.171 25 H 0.054 0.946 26 H 0.085 0.915 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.052 0.948 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.114 0.886 36 H 0.402 0.598 37 H 0.131 0.869 38 H 0.106 0.894 39 H 0.282 0.718 40 H 0.130 0.870 41 H 0.152 0.848 42 H 0.076 0.924 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.166 5.948 -18.184 30.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.015 3.985 3 C -0.231 4.231 4 O -0.306 6.306 5 C 0.011 3.989 6 C -0.176 4.176 7 C 0.027 3.973 8 N -0.365 5.365 9 C 0.059 3.941 10 C -0.175 4.175 11 C -0.208 4.208 12 C 0.017 3.983 13 O -0.163 6.163 14 C -0.467 4.467 15 H 0.094 0.906 16 C -0.195 4.195 17 N -0.573 5.573 18 Si 0.796 3.204 19 H -0.192 1.192 20 H -0.195 1.195 21 H -0.187 1.187 22 C -0.161 4.161 23 C -0.168 4.168 24 C -0.211 4.211 25 H 0.073 0.927 26 H 0.104 0.896 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.071 0.929 32 H 0.125 0.875 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.131 0.869 36 H 0.237 0.763 37 H 0.149 0.851 38 H 0.124 0.876 39 H 0.091 0.909 40 H 0.148 0.852 41 H 0.169 0.831 42 H 0.094 0.906 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -23.950 5.943 -18.211 30.668 hybrid contribution 0.709 0.030 0.706 1.001 sum -23.241 5.973 -17.505 29.702 Atomic orbital electron populations 1.21887 0.93164 1.02694 1.02912 1.22365 0.95479 0.92760 0.87889 1.22314 1.01388 0.96709 1.02680 1.87961 1.36429 1.69512 1.36692 1.23604 0.83226 0.92941 0.99127 1.23555 0.95015 0.98115 1.00915 1.22153 0.94875 0.95645 0.84673 1.44339 1.02076 1.82068 1.07987 1.17601 0.85239 0.98659 0.92576 1.20464 0.94113 1.06903 0.96059 1.21067 0.93918 1.07065 0.98734 1.19479 0.83234 1.00713 0.94906 1.83495 1.20319 1.82280 1.30229 1.20668 0.94858 1.48097 0.83095 0.90563 1.25283 0.99066 0.95854 0.99283 1.69755 1.19200 1.48692 1.19690 0.85173 0.77480 0.78744 0.79030 1.19237 1.19502 1.18654 1.20310 0.96372 1.06204 0.93196 1.20545 0.90561 1.06782 0.98956 1.24105 0.98029 0.98049 1.00903 0.92729 0.89615 0.92166 0.90881 0.92812 0.90291 0.92930 0.87472 0.89197 0.89432 0.86856 0.76289 0.85074 0.87572 0.90877 0.85225 0.83061 0.90562 0.90824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.56 71.98 0.69 -0.86 16 2 C 0.07 0.89 3.33 30.59 0.10 0.99 16 3 C -0.17 -2.05 9.53 71.98 0.69 -1.36 16 4 O -0.39 -6.59 10.00 -148.98 -1.49 -8.08 16 5 C 0.07 0.97 4.27 31.18 0.13 1.11 16 6 C -0.14 -1.97 7.66 31.12 0.24 -1.73 16 7 C 0.13 2.29 4.00 45.52 0.18 2.47 16 8 N -0.73 -16.46 5.54 -316.33 -1.75 -18.22 16 9 C 0.16 4.90 6.66 38.21 0.25 5.15 16 10 C -0.15 -5.48 9.89 22.39 0.22 -5.26 16 11 C -0.19 -8.55 9.16 22.38 0.20 -8.34 16 12 C 0.07 3.13 6.65 22.59 0.15 3.28 16 13 O -0.25 -14.25 8.58 -23.04 -0.20 -14.45 16 14 C -0.39 -23.74 9.94 67.91 0.68 -23.07 16 15 H 0.08 4.86 5.43 -2.91 -0.02 4.85 16 16 C 0.00 0.12 5.49 84.82 0.47 0.58 16 17 N -0.93 -57.29 13.96 21.61 0.30 -56.99 16 18 Si 0.97 46.86 28.62 68.60 1.96 48.83 16 19 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 21 H -0.26 -12.54 7.11 99.48 0.71 -11.83 16 22 C -0.14 -5.47 9.98 22.37 0.22 -5.24 16 23 C -0.15 -4.53 9.25 22.39 0.21 -4.33 16 24 C -0.17 -2.88 7.73 31.18 0.24 -2.64 16 25 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 26 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.07 0.69 7.42 -2.39 -0.02 0.68 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.11 1.09 7.45 -2.39 -0.02 1.07 16 33 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.09 1.38 8.11 -2.39 -0.02 1.36 16 35 H 0.11 1.80 6.20 -2.39 -0.01 1.78 16 36 H 0.40 8.09 8.72 -92.71 -0.81 7.28 16 37 H 0.13 4.01 8.06 -2.91 -0.02 3.98 16 38 H 0.11 5.32 5.63 -2.91 -0.02 5.30 16 39 H 0.28 15.93 8.31 -92.71 -0.77 15.16 16 40 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 41 H 0.15 3.51 6.08 -2.91 -0.02 3.50 16 42 H 0.08 1.54 8.14 -2.39 -0.02 1.53 16 43 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -69.72 353.88 3.70 -66.03 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: 0.20 Total: 22.12 kcal Atomic # 6 Polarization: -43.91 SS G_CDS: 4.67 Total: -39.24 kcal Atomic # 7 Polarization: -73.76 SS G_CDS: -1.45 Total: -75.21 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -1.69 Total: -22.52 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 1.96 Total: 48.83 kcal Total: -69.72 3.70 -66.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320594829.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.831 kcal (2) G-P(sol) polarization free energy of solvation -69.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds