Wall clock time and date at job start Tue Mar 31 2020 06:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99635 * 2 1 4 4 C 1.53002 * 109.47406 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47288 * 299.99628 * 3 2 1 6 6 N 1.46500 * 109.47280 * 300.00143 * 5 3 2 7 7 C 1.39775 * 120.00282 * 179.97438 * 6 5 3 8 8 C 1.38950 * 120.00863 * 179.97438 * 7 6 5 9 9 C 1.38013 * 119.99674 * 180.02562 * 8 7 6 10 10 C 1.38892 * 120.00492 * 0.02562 * 9 8 7 11 11 O 1.35792 * 119.99674 * 179.97438 * 10 9 8 12 12 C 1.34812 * 116.99753 * 354.45248 * 11 10 9 13 13 H 1.08004 * 120.00465 * 5.06270 * 12 11 10 14 14 C 1.38630 * 120.00123 * 185.05788 * 12 11 10 15 15 N 1.31582 * 119.99830 * 180.02562 * 14 12 11 16 16 Si 1.86789 * 119.99957 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47302 * 89.99967 * 16 14 12 18 18 H 1.48506 * 109.47294 * 210.00065 * 16 14 12 19 19 H 1.48501 * 109.47405 * 330.00005 * 16 14 12 20 20 C 1.38903 * 120.01402 * 0.26776 * 10 9 8 21 21 C 1.38013 * 120.00179 * 359.45513 * 20 10 9 22 22 C 1.53008 * 109.47170 * 59.99902 * 3 2 1 23 23 C 1.52998 * 117.50005 * 133.62473 * 22 3 2 24 24 C 1.52991 * 117.49879 * 64.99924 * 22 3 2 25 25 H 1.08998 * 109.47652 * 299.99650 * 1 2 3 26 26 H 1.08994 * 109.47130 * 60.00816 * 1 2 3 27 27 H 1.09002 * 109.46526 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47494 * 180.02562 * 4 3 2 29 29 H 1.09002 * 109.47183 * 300.00421 * 4 3 2 30 30 H 1.09007 * 109.46904 * 59.99707 * 4 3 2 31 31 H 1.08998 * 109.47625 * 180.02562 * 5 3 2 32 32 H 1.09004 * 109.46762 * 60.00128 * 5 3 2 33 33 H 0.97006 * 119.99958 * 0.02562 * 6 5 3 34 34 H 1.08004 * 120.00160 * 0.02562 * 8 7 6 35 35 H 1.07998 * 119.99585 * 179.97438 * 9 8 7 36 36 H 0.97001 * 119.99787 * 180.02562 * 15 14 12 37 37 H 1.08002 * 120.00005 * 179.70569 * 20 10 9 38 38 H 1.07996 * 120.00087 * 180.27490 * 21 20 10 39 39 H 1.08997 * 115.54347 * 279.32479 * 22 3 2 40 40 H 1.09007 * 117.49845 * 359.97438 * 23 22 3 41 41 H 1.08993 * 117.50025 * 145.02198 * 23 22 3 42 42 H 1.09004 * 117.49903 * 214.98156 * 24 22 3 43 43 H 1.08994 * 117.50417 * 0.02562 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1849 0.0006 5 6 1.5588 2.0647 -1.2492 6 7 1.9911 1.3377 -2.4454 7 6 1.6918 1.8401 -3.7149 8 6 2.1023 1.1510 -4.8495 9 6 1.8071 1.6475 -6.1029 10 6 1.1002 2.8363 -6.2303 11 8 0.8103 3.3250 -7.4636 12 6 1.3347 2.6714 -8.5197 13 1 1.8857 1.7549 -8.3683 14 6 1.1666 3.1755 -9.8001 15 7 1.6780 2.5373 -10.8308 16 14 0.2141 4.7608 -10.0620 17 1 1.1464 5.9149 -9.9980 18 1 -0.4436 4.7291 -11.3931 19 1 -0.8180 4.8990 -9.0032 20 6 0.6950 3.5286 -5.0963 21 6 0.9850 3.0296 -3.8427 22 6 1.5586 2.0648 1.2493 23 6 2.6289 2.8124 2.0470 24 6 2.0160 1.5271 2.6066 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 3.9787 2.1806 0.0011 29 1 3.8567 0.6441 0.8908 30 1 3.8574 0.6437 -0.8891 31 1 2.0024 3.0603 -1.2495 32 1 0.4721 2.1507 -1.2492 33 1 2.4845 0.5073 -2.3564 34 1 2.6523 0.2268 -4.7506 35 1 2.1265 1.1121 -6.9848 36 1 1.5607 2.8902 -11.7267 37 1 0.1495 4.4554 -5.1956 38 1 0.6661 3.5656 -2.9611 39 1 0.5668 2.5134 1.1938 40 1 3.6549 2.7630 1.6821 41 1 2.3414 3.7530 2.5166 42 1 1.3251 1.6222 3.4444 43 1 2.6389 0.6327 2.6097 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332961800.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:41 Heat of formation + Delta-G solvation = -9.852747 kcal Electronic energy + Delta-G solvation = -22962.681446 eV Core-core repulsion = 19589.098239 eV Total energy + Delta-G solvation = -3373.583208 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.18636 -39.02214 -37.11289 -36.41381 -34.35220 -32.22866 -31.17967 -30.25735 -28.09608 -26.75801 -26.26323 -24.88316 -23.31024 -22.65501 -21.99199 -20.49713 -19.48088 -17.72525 -17.42375 -17.02844 -16.75439 -15.89640 -15.50701 -15.14368 -14.95736 -14.27144 -13.96107 -13.78405 -13.69195 -13.47488 -13.31626 -12.89616 -12.71959 -12.66535 -12.18876 -12.05504 -12.01830 -11.85505 -11.54822 -11.47082 -11.43639 -10.95883 -10.79591 -10.72389 -10.57619 -10.46038 -10.08086 -9.71482 -9.27160 -9.19399 -8.52362 -8.22601 -6.47170 -6.28792 -3.93061 2.13998 2.49781 3.19298 3.29250 3.32690 3.48093 3.67800 3.85815 4.30005 4.34124 4.44767 4.57305 4.62461 4.68192 4.80014 5.01204 5.04769 5.22013 5.22580 5.25361 5.28351 5.42419 5.46937 5.49046 5.56451 5.61475 5.64138 5.65916 5.72593 5.77203 5.80654 6.00077 6.15521 6.19086 6.46315 6.80572 6.82821 6.99561 7.03360 7.37317 7.50824 7.81432 7.95497 8.13411 8.24991 9.07922 9.74374 10.79886 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.036737 B = 0.002861 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.993174 B = 9782.973558 C = 9993.658307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.371 6.371 3 C 0.137 3.863 4 C -0.141 4.141 5 C 0.115 3.885 6 N -0.751 5.751 7 C 0.135 3.865 8 C -0.143 4.143 9 C -0.174 4.174 10 C 0.116 3.884 11 O -0.228 6.228 12 C -0.384 4.384 13 H 0.103 0.897 14 C 0.059 3.941 15 N -0.888 5.888 16 Si 0.905 3.095 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.261 1.261 20 C -0.149 4.149 21 C -0.152 4.152 22 C -0.183 4.183 23 C -0.175 4.175 24 C -0.165 4.165 25 H 0.041 0.959 26 H 0.048 0.952 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.395 0.605 34 H 0.108 0.892 35 H 0.133 0.867 36 H 0.277 0.723 37 H 0.116 0.884 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.386 -1.747 25.563 25.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.290 6.290 3 C 0.097 3.903 4 C -0.198 4.198 5 C -0.011 4.011 6 N -0.387 5.387 7 C 0.036 3.964 8 C -0.166 4.166 9 C -0.194 4.194 10 C 0.065 3.935 11 O -0.135 6.135 12 C -0.460 4.460 13 H 0.120 0.880 14 C -0.143 4.143 15 N -0.528 5.528 16 Si 0.731 3.269 17 H -0.201 1.201 18 H -0.210 1.210 19 H -0.185 1.185 20 C -0.169 4.169 21 C -0.174 4.174 22 C -0.202 4.202 23 C -0.212 4.212 24 C -0.202 4.202 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.101 0.899 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.230 0.770 34 H 0.126 0.874 35 H 0.151 0.849 36 H 0.087 0.913 37 H 0.134 0.866 38 H 0.128 0.872 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.113 0.887 42 H 0.111 0.889 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.299 -1.585 25.353 25.404 hybrid contribution -0.444 0.473 -0.259 0.699 sum -0.145 -1.112 25.094 25.119 Atomic orbital electron populations 1.22733 0.81237 1.02580 1.00267 1.87952 1.19826 1.26466 1.94765 1.21144 0.94314 0.83193 0.91612 1.21869 0.92119 1.02807 1.03020 1.21607 0.99051 0.95698 0.84767 1.44125 1.65521 1.27804 1.01295 1.17449 0.99699 0.94720 0.84515 1.20289 1.04736 1.00447 0.91092 1.21110 1.03285 0.97654 0.97363 1.18954 0.95905 0.92858 0.85782 1.83571 1.66103 1.52589 1.11243 1.20708 1.33974 1.08005 0.83280 0.87960 1.24425 0.97053 0.98905 0.93876 1.69666 1.44440 1.39733 0.98960 0.86183 0.80630 0.82470 0.77583 1.20092 1.21035 1.18477 1.20000 1.05948 1.00919 0.90029 1.20137 1.04339 0.96625 0.96291 1.22770 0.99942 1.04553 0.92907 1.23134 0.98520 0.96161 1.03371 1.22867 1.03687 0.97991 0.95611 0.94049 0.93350 0.89933 0.90506 0.91739 0.91345 0.92019 0.92773 0.77008 0.87350 0.84899 0.91336 0.86639 0.87210 0.87625 0.87850 0.88711 0.88898 0.88364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.31 101.05 1.04 1.30 16 2 O -0.37 -3.95 10.07 -35.23 -0.35 -4.31 16 3 C 0.14 1.28 0.60 -90.62 -0.05 1.22 16 4 C -0.14 -1.21 7.33 37.16 0.27 -0.94 16 5 C 0.11 1.26 3.46 -4.04 -0.01 1.25 16 6 N -0.75 -10.01 5.33 -58.59 -0.31 -10.32 16 7 C 0.13 2.27 6.66 -83.71 -0.56 1.72 16 8 C -0.14 -2.65 9.89 -39.40 -0.39 -3.04 16 9 C -0.17 -3.84 9.16 -39.42 -0.36 -4.20 16 10 C 0.12 2.74 6.65 -39.09 -0.26 2.48 16 11 O -0.23 -6.19 8.58 -0.03 0.00 -6.19 16 12 C -0.38 -11.08 9.94 30.88 0.31 -10.78 16 13 H 0.10 3.01 5.43 -52.48 -0.29 2.73 16 14 C 0.06 1.70 5.49 -17.51 -0.10 1.60 16 15 N -0.89 -26.34 13.96 55.48 0.77 -25.57 16 16 Si 0.91 22.28 28.61 -169.99 -4.86 17.42 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.26 -6.43 7.11 56.52 0.40 -6.03 16 20 C -0.15 -3.02 9.98 -39.42 -0.39 -3.41 16 21 C -0.15 -2.64 9.30 -39.40 -0.37 -3.00 16 22 C -0.18 -1.44 4.00 -90.62 -0.36 -1.80 16 23 C -0.18 -1.18 9.65 -26.73 -0.26 -1.44 16 24 C -0.16 -1.15 9.85 -26.74 -0.26 -1.42 16 25 H 0.04 0.33 6.99 -51.93 -0.36 -0.04 16 26 H 0.05 0.49 6.42 -51.93 -0.33 0.16 16 27 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.08 0.60 6.74 -51.93 -0.35 0.25 16 29 H 0.06 0.51 6.96 -51.93 -0.36 0.15 16 30 H 0.07 0.64 6.86 -51.93 -0.36 0.28 16 31 H 0.06 0.69 7.95 -51.93 -0.41 0.27 16 32 H 0.05 0.61 6.35 -51.93 -0.33 0.28 16 33 H 0.39 5.00 7.21 -40.82 -0.29 4.71 16 34 H 0.11 1.76 8.06 -52.48 -0.42 1.33 16 35 H 0.13 3.08 5.63 -52.49 -0.30 2.78 16 36 H 0.28 7.59 8.31 -40.82 -0.34 7.25 16 37 H 0.12 2.18 8.06 -52.49 -0.42 1.75 16 38 H 0.11 1.62 6.73 -52.49 -0.35 1.27 16 39 H 0.11 0.81 7.90 -51.93 -0.41 0.40 16 40 H 0.10 0.66 5.89 -51.92 -0.31 0.36 16 41 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.10 0.72 7.29 -51.93 -0.38 0.34 16 LS Contribution 343.34 15.07 5.17 5.17 Total: -1.00 -30.62 343.34 -7.41 -38.03 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -6.08 Total: 6.21 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: -1.76 Total: -20.45 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: 0.46 Total: -35.89 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: -0.35 Total: -10.50 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.86 Total: 17.42 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.62 -7.41 -38.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332961800.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.181 kcal (2) G-P(sol) polarization free energy of solvation -30.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds