Wall clock time and date at job start Tue Mar 31 2020 06:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99635 * 2 1 4 4 C 1.53002 * 109.47406 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47288 * 299.99628 * 3 2 1 6 6 N 1.46500 * 109.47280 * 300.00143 * 5 3 2 7 7 C 1.39775 * 120.00282 * 179.97438 * 6 5 3 8 8 C 1.38950 * 120.00863 * 179.97438 * 7 6 5 9 9 C 1.38013 * 119.99674 * 180.02562 * 8 7 6 10 10 C 1.38892 * 120.00492 * 0.02562 * 9 8 7 11 11 O 1.35792 * 119.99674 * 179.97438 * 10 9 8 12 12 C 1.34812 * 116.99753 * 354.45248 * 11 10 9 13 13 H 1.08004 * 120.00465 * 5.06270 * 12 11 10 14 14 C 1.38630 * 120.00123 * 185.05788 * 12 11 10 15 15 N 1.31582 * 119.99830 * 180.02562 * 14 12 11 16 16 Si 1.86789 * 119.99957 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47302 * 89.99967 * 16 14 12 18 18 H 1.48506 * 109.47294 * 210.00065 * 16 14 12 19 19 H 1.48501 * 109.47405 * 330.00005 * 16 14 12 20 20 C 1.38903 * 120.01402 * 0.26776 * 10 9 8 21 21 C 1.38013 * 120.00179 * 359.45513 * 20 10 9 22 22 C 1.53008 * 109.47170 * 59.99902 * 3 2 1 23 23 C 1.52998 * 117.50005 * 133.62473 * 22 3 2 24 24 C 1.52991 * 117.49879 * 64.99924 * 22 3 2 25 25 H 1.08998 * 109.47652 * 299.99650 * 1 2 3 26 26 H 1.08994 * 109.47130 * 60.00816 * 1 2 3 27 27 H 1.09002 * 109.46526 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47494 * 180.02562 * 4 3 2 29 29 H 1.09002 * 109.47183 * 300.00421 * 4 3 2 30 30 H 1.09007 * 109.46904 * 59.99707 * 4 3 2 31 31 H 1.08998 * 109.47625 * 180.02562 * 5 3 2 32 32 H 1.09004 * 109.46762 * 60.00128 * 5 3 2 33 33 H 0.97006 * 119.99958 * 0.02562 * 6 5 3 34 34 H 1.08004 * 120.00160 * 0.02562 * 8 7 6 35 35 H 1.07998 * 119.99585 * 179.97438 * 9 8 7 36 36 H 0.97001 * 119.99787 * 180.02562 * 15 14 12 37 37 H 1.08002 * 120.00005 * 179.70569 * 20 10 9 38 38 H 1.07996 * 120.00087 * 180.27490 * 21 20 10 39 39 H 1.08997 * 115.54347 * 279.32479 * 22 3 2 40 40 H 1.09007 * 117.49845 * 359.97438 * 23 22 3 41 41 H 1.08993 * 117.50025 * 145.02198 * 23 22 3 42 42 H 1.09004 * 117.49903 * 214.98156 * 24 22 3 43 43 H 1.08994 * 117.50417 * 0.02562 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1849 0.0006 5 6 1.5588 2.0647 -1.2492 6 7 1.9911 1.3377 -2.4454 7 6 1.6918 1.8401 -3.7149 8 6 2.1023 1.1510 -4.8495 9 6 1.8071 1.6475 -6.1029 10 6 1.1002 2.8363 -6.2303 11 8 0.8103 3.3250 -7.4636 12 6 1.3347 2.6714 -8.5197 13 1 1.8857 1.7549 -8.3683 14 6 1.1666 3.1755 -9.8001 15 7 1.6780 2.5373 -10.8308 16 14 0.2141 4.7608 -10.0620 17 1 1.1464 5.9149 -9.9980 18 1 -0.4436 4.7291 -11.3931 19 1 -0.8180 4.8990 -9.0032 20 6 0.6950 3.5286 -5.0963 21 6 0.9850 3.0296 -3.8427 22 6 1.5586 2.0648 1.2493 23 6 2.6289 2.8124 2.0470 24 6 2.0160 1.5271 2.6066 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 3.9787 2.1806 0.0011 29 1 3.8567 0.6441 0.8908 30 1 3.8574 0.6437 -0.8891 31 1 2.0024 3.0603 -1.2495 32 1 0.4721 2.1507 -1.2492 33 1 2.4845 0.5073 -2.3564 34 1 2.6523 0.2268 -4.7506 35 1 2.1265 1.1121 -6.9848 36 1 1.5607 2.8902 -11.7267 37 1 0.1495 4.4554 -5.1956 38 1 0.6661 3.5656 -2.9611 39 1 0.5668 2.5134 1.1938 40 1 3.6549 2.7630 1.6821 41 1 2.3414 3.7530 2.5166 42 1 1.3251 1.6222 3.4444 43 1 2.6389 0.6327 2.6097 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332961800.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:40 Heat of formation + Delta-G solvation = -28.548009 kcal Electronic energy + Delta-G solvation = -22963.492134 eV Core-core repulsion = 19589.098239 eV Total energy + Delta-G solvation = -3374.393895 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.07792 -40.56105 -38.67812 -37.10201 -35.64811 -34.30110 -32.18502 -31.77431 -29.33153 -27.99414 -27.09333 -26.58267 -24.35252 -23.47714 -23.16758 -22.04219 -20.23733 -19.62115 -19.08017 -18.17023 -17.64859 -16.95170 -16.47565 -16.37309 -15.90138 -15.80776 -15.54833 -15.31075 -15.05555 -14.68107 -14.34243 -14.24720 -14.10124 -13.86375 -13.61300 -13.39396 -13.05294 -13.00981 -12.70148 -12.53258 -12.49583 -12.38393 -12.07685 -11.93131 -11.58985 -11.27328 -11.19943 -11.07775 -10.97847 -10.46645 -10.28274 -9.80233 -8.42889 -7.97904 -6.10646 0.56011 0.88625 1.33716 1.38576 1.55314 2.33388 2.42696 2.78653 2.85099 3.14844 3.17532 3.30371 3.55777 3.78573 3.92932 4.09944 4.11042 4.15651 4.18935 4.35654 4.48030 4.55976 4.57520 4.63992 4.65545 4.72671 4.82417 4.84021 4.88500 4.94361 4.98398 5.04229 5.16243 5.22485 5.23800 5.29968 5.35898 5.48770 5.62525 5.83435 5.86371 6.14391 6.26605 6.59498 6.92801 6.97722 7.73197 8.69607 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.036737 B = 0.002861 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.993174 B = 9782.973558 C = 9993.658307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.387 6.387 3 C 0.141 3.859 4 C -0.142 4.142 5 C 0.109 3.891 6 N -0.738 5.738 7 C 0.163 3.837 8 C -0.152 4.152 9 C -0.186 4.186 10 C 0.066 3.934 11 O -0.254 6.254 12 C -0.391 4.391 13 H 0.077 0.923 14 C 0.003 3.997 15 N -0.932 5.932 16 Si 0.972 3.028 17 H -0.267 1.267 18 H -0.270 1.270 19 H -0.263 1.263 20 C -0.140 4.140 21 C -0.148 4.148 22 C -0.191 4.191 23 C -0.169 4.169 24 C -0.163 4.163 25 H 0.054 0.946 26 H 0.038 0.962 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.401 0.599 34 H 0.130 0.870 35 H 0.107 0.893 36 H 0.282 0.718 37 H 0.129 0.871 38 H 0.146 0.854 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.084 -0.654 29.021 29.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.306 6.306 3 C 0.101 3.899 4 C -0.199 4.199 5 C -0.016 4.016 6 N -0.373 5.373 7 C 0.061 3.939 8 C -0.174 4.174 9 C -0.205 4.205 10 C 0.017 3.983 11 O -0.163 6.163 12 C -0.468 4.468 13 H 0.095 0.905 14 C -0.194 4.194 15 N -0.574 5.574 16 Si 0.795 3.205 17 H -0.192 1.192 18 H -0.195 1.195 19 H -0.187 1.187 20 C -0.160 4.160 21 C -0.171 4.171 22 C -0.210 4.210 23 C -0.206 4.206 24 C -0.200 4.200 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.107 0.893 28 H 0.104 0.896 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.237 0.763 34 H 0.148 0.852 35 H 0.125 0.875 36 H 0.091 0.909 37 H 0.147 0.853 38 H 0.164 0.836 39 H 0.128 0.872 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.120 0.880 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.157 -0.518 28.894 28.899 hybrid contribution -0.227 -0.013 -0.937 0.964 sum -0.385 -0.531 27.958 27.965 Atomic orbital electron populations 1.22794 0.80640 1.03136 1.00378 1.87943 1.20557 1.27285 1.94823 1.21134 0.94571 0.82756 0.91414 1.21904 0.91720 1.03367 1.02920 1.21837 0.99408 0.96068 0.84265 1.44244 1.64363 1.27900 1.00758 1.17558 0.97081 0.93769 0.85476 1.20438 1.05195 1.01503 0.90290 1.21056 1.03833 0.97576 0.98068 1.19446 0.98745 0.94496 0.85577 1.83499 1.67705 1.53220 1.11877 1.20675 1.33922 1.07575 0.84602 0.90544 1.25267 0.98250 1.02388 0.93447 1.69756 1.46456 1.41666 0.99532 0.85186 0.79192 0.78325 0.77799 1.19183 1.19460 1.18724 1.20285 1.04883 1.00985 0.89845 1.20467 1.03543 0.96694 0.96346 1.22709 1.00538 1.05213 0.92514 1.23216 0.98335 0.96437 1.02581 1.22905 1.03729 0.98051 0.95321 0.92716 0.94365 0.89321 0.89554 0.91065 0.92297 0.91134 0.92318 0.76303 0.85196 0.87509 0.90858 0.85295 0.83594 0.87250 0.87523 0.87743 0.88000 0.88821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.31 113.37 1.17 1.59 16 2 O -0.39 -7.22 10.07 -148.98 -1.50 -8.72 16 3 C 0.14 2.19 0.60 -10.79 -0.01 2.18 16 4 C -0.14 -2.04 7.33 71.98 0.53 -1.51 16 5 C 0.11 2.01 3.46 86.38 0.30 2.31 16 6 N -0.74 -17.33 5.33 -339.27 -1.81 -19.14 16 7 C 0.16 5.07 6.66 38.22 0.25 5.33 16 8 C -0.15 -5.50 9.89 22.39 0.22 -5.28 16 9 C -0.19 -8.46 9.16 22.37 0.20 -8.26 16 10 C 0.07 3.18 6.65 22.59 0.15 3.33 16 11 O -0.25 -14.27 8.58 -23.02 -0.20 -14.46 16 12 C -0.39 -23.81 9.94 67.91 0.68 -23.13 16 13 H 0.08 4.88 5.43 -2.91 -0.02 4.86 16 14 C 0.00 0.20 5.49 84.82 0.47 0.66 16 15 N -0.93 -57.41 13.96 21.61 0.30 -57.11 16 16 Si 0.97 46.91 28.61 68.60 1.96 48.87 16 17 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 18 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 19 H -0.26 -12.62 7.11 99.48 0.71 -11.92 16 20 C -0.14 -5.50 9.98 22.38 0.22 -5.28 16 21 C -0.15 -4.71 9.30 22.39 0.21 -4.50 16 22 C -0.19 -2.37 4.00 -10.79 -0.04 -2.42 16 23 C -0.17 -1.70 9.65 30.59 0.30 -1.41 16 24 C -0.16 -1.79 9.85 30.59 0.30 -1.49 16 25 H 0.05 0.71 6.99 -2.39 -0.02 0.69 16 26 H 0.04 0.67 6.42 -2.39 -0.02 0.66 16 27 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.09 1.07 6.74 -2.39 -0.02 1.05 16 29 H 0.07 0.93 6.96 -2.39 -0.02 0.92 16 30 H 0.06 0.95 6.86 -2.38 -0.02 0.94 16 31 H 0.07 1.25 7.95 -2.39 -0.02 1.24 16 32 H 0.06 1.09 6.35 -2.38 -0.02 1.08 16 33 H 0.40 8.97 7.21 -92.70 -0.67 8.30 16 34 H 0.13 4.06 8.06 -2.91 -0.02 4.04 16 35 H 0.11 5.36 5.63 -2.91 -0.02 5.34 16 36 H 0.28 15.95 8.31 -92.71 -0.77 15.18 16 37 H 0.13 4.63 8.06 -2.91 -0.02 4.61 16 38 H 0.15 3.61 6.73 -2.91 -0.02 3.59 16 39 H 0.11 1.29 7.90 -2.39 -0.02 1.27 16 40 H 0.11 1.01 5.89 -2.38 -0.01 1.00 16 41 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 43 H 0.09 1.13 7.29 -2.39 -0.02 1.11 16 Total: -1.00 -68.60 343.34 4.06 -64.54 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: 0.36 Total: 23.89 kcal Atomic # 6 Polarization: -42.81 SS G_CDS: 4.95 Total: -37.87 kcal Atomic # 7 Polarization: -74.74 SS G_CDS: -1.51 Total: -76.25 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -1.70 Total: -23.18 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 1.96 Total: 48.87 kcal Total: -68.60 4.06 -64.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332961800.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.988 kcal (2) G-P(sol) polarization free energy of solvation -68.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds