Wall clock time and date at job start Tue Mar 31 2020 06:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42906 * 113.99833 * 2 1 4 4 C 1.53000 * 109.46890 * 185.15288 * 3 2 1 5 5 C 1.53002 * 109.47130 * 65.15828 * 3 2 1 6 6 N 1.46502 * 109.47178 * 64.99538 * 5 3 2 7 7 C 1.39780 * 119.99919 * 180.02562 * 6 5 3 8 8 C 1.38951 * 120.00659 * 359.72641 * 7 6 5 9 9 C 1.38016 * 119.99571 * 179.72085 * 8 7 6 10 10 C 1.38897 * 119.99999 * 0.55568 * 9 8 7 11 11 O 1.35800 * 119.99090 * 179.69959 * 10 9 8 12 12 C 1.34813 * 117.00179 * 185.58409 * 11 10 9 13 13 H 1.07998 * 119.99422 * 354.93766 * 12 11 10 14 14 C 1.38614 * 120.00253 * 174.94084 * 12 11 10 15 15 N 1.31588 * 119.99745 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00252 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46703 * 90.00028 * 16 14 12 18 18 H 1.48500 * 109.47331 * 210.00037 * 16 14 12 19 19 H 1.48499 * 109.46969 * 330.00483 * 16 14 12 20 20 C 1.38895 * 120.01581 * 359.72044 * 10 9 8 21 21 C 1.38007 * 120.00947 * 0.02562 * 20 10 9 22 22 C 1.52995 * 109.47110 * 305.15359 * 3 2 1 23 23 C 1.53002 * 117.51837 * 226.32342 * 22 3 2 24 24 C 1.52998 * 117.50090 * 294.95516 * 22 3 2 25 25 H 1.09005 * 109.46845 * 64.88835 * 1 2 3 26 26 H 1.08998 * 109.47131 * 184.89097 * 1 2 3 27 27 H 1.09004 * 109.46958 * 304.89098 * 1 2 3 28 28 H 1.09001 * 109.47449 * 180.02562 * 4 3 2 29 29 H 1.09004 * 109.47631 * 300.00165 * 4 3 2 30 30 H 1.09002 * 109.47122 * 60.00153 * 4 3 2 31 31 H 1.08999 * 109.47147 * 184.99586 * 5 3 2 32 32 H 1.09004 * 109.47172 * 304.99604 * 5 3 2 33 33 H 0.96997 * 120.00274 * 0.02562 * 6 5 3 34 34 H 1.08001 * 120.00371 * 359.97438 * 8 7 6 35 35 H 1.07998 * 119.99974 * 180.24994 * 9 8 7 36 36 H 0.97008 * 119.99787 * 180.02562 * 15 14 12 37 37 H 1.08003 * 119.99955 * 179.97438 * 20 10 9 38 38 H 1.07992 * 120.00945 * 179.97438 * 21 20 10 39 39 H 1.09002 * 115.54951 * 80.62743 * 22 3 2 40 40 H 1.08998 * 117.50259 * 214.97362 * 23 22 3 41 41 H 1.09002 * 117.49635 * 359.97438 * 23 22 3 42 42 H 1.09000 * 117.49912 * 359.97438 * 24 22 3 43 43 H 1.09001 * 117.49530 * 144.97530 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5301 1.1871 -0.1296 5 6 1.6640 2.0179 1.3090 6 7 2.2927 1.3137 2.4294 7 6 2.1180 1.7810 3.7351 8 6 1.3527 2.9167 3.9701 9 6 1.1756 3.3746 5.2600 10 6 1.7718 2.7069 6.3220 11 8 1.6023 3.1611 7.5905 12 6 2.2996 2.5385 8.5619 13 1 2.8926 1.6670 8.3269 14 6 2.2555 3.0167 9.8621 15 7 1.5325 4.0783 10.1485 16 14 3.2211 2.1535 11.2082 17 1 4.5797 2.7459 11.3003 18 1 2.5191 2.3209 12.5061 19 1 3.3322 0.7077 10.8882 20 6 2.5415 1.5749 6.0868 21 6 2.7146 1.1135 4.7978 22 6 1.4589 2.1092 -1.1794 23 6 2.4608 2.8882 -2.0340 24 6 1.8034 1.6227 -2.5884 25 1 -0.3633 0.4362 -0.9306 26 1 -0.3633 -1.0239 0.0876 27 1 -0.3633 0.5879 0.8430 28 1 3.9736 2.1828 -0.1291 29 1 3.9230 0.6145 0.7107 30 1 3.7768 0.6795 -1.0621 31 1 2.0311 3.0436 1.2726 32 1 0.5824 2.0237 1.4445 33 1 2.8302 0.5232 2.2651 34 1 0.8932 3.4388 3.1439 35 1 0.5775 4.2550 5.4431 36 1 1.5019 4.4132 11.0584 37 1 3.0053 1.0561 6.9128 38 1 3.3135 0.2336 4.6149 39 1 0.4753 2.5534 -1.0267 40 1 2.1364 3.8447 -2.4436 41 1 3.5131 2.8285 -1.7557 42 1 2.4232 0.7303 -2.6753 43 1 1.0462 1.7465 -3.3627 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332961803.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:44 Heat of formation + Delta-G solvation = -10.508170 kcal Electronic energy + Delta-G solvation = -22913.492378 eV Core-core repulsion = 19539.880749 eV Total energy + Delta-G solvation = -3373.611629 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.15483 -38.86974 -36.94493 -36.35278 -34.31062 -32.10835 -31.04726 -30.16499 -27.94002 -26.62398 -26.23485 -25.03144 -23.31658 -22.64086 -21.83451 -20.55995 -19.42856 -17.79568 -17.30261 -16.86988 -16.69284 -15.83856 -15.39369 -15.11373 -14.80446 -14.38157 -14.01834 -13.67065 -13.59186 -13.44324 -13.21435 -12.87082 -12.77719 -12.54749 -12.31292 -11.98889 -11.83381 -11.53939 -11.52051 -11.37081 -11.27009 -10.94125 -10.86810 -10.72178 -10.54262 -10.46147 -10.32343 -9.66822 -9.19786 -9.14039 -8.40594 -8.13386 -6.35291 -6.29578 -3.86822 2.23816 2.61440 3.20293 3.21188 3.23135 3.25475 3.71841 3.88496 4.08315 4.34541 4.47024 4.59990 4.69303 4.72299 4.83509 5.04670 5.21371 5.22984 5.25897 5.30508 5.44062 5.45823 5.49946 5.52667 5.59199 5.66252 5.70300 5.73338 5.79470 5.81467 5.84161 6.03075 6.24769 6.27854 6.58058 6.89993 6.93847 7.02863 7.17429 7.35386 7.48778 7.67983 8.02828 8.14912 8.30383 9.16340 9.91332 10.89134 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.037932 B = 0.002763 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.984125 B =10130.229622 C =10275.113762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.372 6.372 3 C 0.137 3.863 4 C -0.141 4.141 5 C 0.116 3.884 6 N -0.752 5.752 7 C 0.126 3.874 8 C -0.148 4.148 9 C -0.150 4.150 10 C 0.113 3.887 11 O -0.189 6.189 12 C -0.386 4.386 13 H 0.088 0.912 14 C 0.035 3.965 15 N -0.870 5.870 16 Si 0.937 3.063 17 H -0.275 1.275 18 H -0.279 1.279 19 H -0.269 1.269 20 C -0.189 4.189 21 C -0.142 4.142 22 C -0.183 4.183 23 C -0.174 4.174 24 C -0.166 4.166 25 H 0.041 0.959 26 H 0.082 0.918 27 H 0.047 0.953 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.393 0.607 34 H 0.108 0.892 35 H 0.116 0.884 36 H 0.267 0.733 37 H 0.127 0.873 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.098 0.902 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.980 -5.326 -23.198 23.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.290 6.290 3 C 0.097 3.903 4 C -0.198 4.198 5 C -0.010 4.010 6 N -0.389 5.389 7 C 0.028 3.972 8 C -0.170 4.170 9 C -0.170 4.170 10 C 0.060 3.940 11 O -0.094 6.094 12 C -0.463 4.463 13 H 0.105 0.895 14 C -0.167 4.167 15 N -0.507 5.507 16 Si 0.763 3.237 17 H -0.201 1.201 18 H -0.204 1.204 19 H -0.194 1.194 20 C -0.209 4.209 21 C -0.164 4.164 22 C -0.202 4.202 23 C -0.211 4.211 24 C -0.202 4.202 25 H 0.060 0.940 26 H 0.100 0.900 27 H 0.065 0.935 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.228 0.772 34 H 0.126 0.874 35 H 0.134 0.866 36 H 0.077 0.923 37 H 0.145 0.855 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.113 0.887 41 H 0.121 0.879 42 H 0.116 0.884 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.787 -5.046 -22.978 23.539 hybrid contribution 0.360 -0.502 0.616 0.873 sum 1.147 -5.548 -22.361 23.068 Atomic orbital electron populations 1.22731 0.81304 1.02581 1.00163 1.87956 1.19780 1.26525 1.94787 1.21145 0.94142 0.83087 0.91881 1.21865 0.92298 1.02848 1.02784 1.21581 0.97593 0.96010 0.85799 1.44120 1.59520 1.33088 1.02164 1.17403 1.00017 0.95720 0.84042 1.20152 1.03387 0.97563 0.95876 1.20011 1.04932 1.01688 0.90383 1.19227 0.95229 0.92998 0.86530 1.83986 1.60140 1.54558 1.10763 1.21231 1.27054 1.11299 0.86679 0.89481 1.25209 0.97618 0.96472 0.97427 1.70056 1.38223 1.22147 1.20255 0.85768 0.79092 0.79185 0.79684 1.20076 1.20433 1.19374 1.20990 1.04360 0.99045 0.96464 1.20228 1.03651 1.00870 0.91674 1.22783 1.00692 1.04258 0.92486 1.23134 0.98793 0.95993 1.03209 1.22879 1.03585 0.98484 0.95302 0.93997 0.89962 0.93478 0.90471 0.91383 0.91772 0.92089 0.92803 0.77178 0.87373 0.86603 0.92344 0.85528 0.87651 0.87560 0.88688 0.87852 0.88382 0.88881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.33 101.05 1.04 1.31 16 2 O -0.37 -4.09 10.27 -35.23 -0.36 -4.46 16 3 C 0.14 1.33 0.63 -90.62 -0.06 1.28 16 4 C -0.14 -1.26 7.27 37.16 0.27 -0.99 16 5 C 0.12 1.36 3.75 -4.04 -0.02 1.34 16 6 N -0.75 -10.51 5.37 -58.58 -0.31 -10.83 16 7 C 0.13 2.23 6.66 -83.70 -0.56 1.68 16 8 C -0.15 -2.73 9.30 -39.40 -0.37 -3.10 16 9 C -0.15 -3.27 9.98 -39.42 -0.39 -3.66 16 10 C 0.11 2.80 6.65 -39.09 -0.26 2.54 16 11 O -0.19 -5.57 9.76 -0.06 0.00 -5.57 16 12 C -0.39 -11.11 9.48 30.87 0.29 -10.81 16 13 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 14 C 0.04 1.00 5.49 -17.52 -0.10 0.91 16 15 N -0.87 -26.29 13.67 55.48 0.76 -25.53 16 16 Si 0.94 21.16 29.55 -169.99 -5.02 16.14 16 17 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 18 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 19 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 20 C -0.19 -4.22 9.16 -39.42 -0.36 -4.58 16 21 C -0.14 -2.70 9.89 -39.40 -0.39 -3.09 16 22 C -0.18 -1.50 3.78 -90.62 -0.34 -1.84 16 23 C -0.17 -1.23 9.65 -26.73 -0.26 -1.49 16 24 C -0.17 -1.19 9.85 -26.73 -0.26 -1.45 16 25 H 0.04 0.34 7.13 -51.93 -0.37 -0.03 16 26 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.47 6.24 -51.93 -0.32 0.15 16 28 H 0.08 0.64 6.74 -51.93 -0.35 0.29 16 29 H 0.07 0.65 6.57 -51.93 -0.34 0.31 16 30 H 0.06 0.52 6.96 -51.93 -0.36 0.16 16 31 H 0.06 0.72 7.94 -51.93 -0.41 0.31 16 32 H 0.05 0.65 6.15 -51.93 -0.32 0.33 16 33 H 0.39 5.15 7.00 -40.82 -0.29 4.87 16 34 H 0.11 1.72 6.73 -52.49 -0.35 1.37 16 35 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 36 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.13 2.84 5.63 -52.48 -0.30 2.54 16 38 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 39 H 0.11 0.85 8.02 -51.93 -0.42 0.43 16 40 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.10 0.70 5.89 -51.93 -0.31 0.39 16 42 H 0.10 0.74 7.29 -51.93 -0.38 0.36 16 43 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 344.17 15.07 5.19 5.19 Total: -1.00 -31.83 344.17 -7.54 -39.37 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -6.04 Total: 7.65 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: -1.75 Total: -21.96 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.44 Total: -36.36 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -0.36 Total: -10.03 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.83 -7.54 -39.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332961803.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.863 kcal (2) G-P(sol) polarization free energy of solvation -31.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds