Wall clock time and date at job start Tue Mar 31 2020 06:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42906 * 113.99833 * 2 1 4 4 C 1.53000 * 109.46890 * 185.15288 * 3 2 1 5 5 C 1.53002 * 109.47130 * 65.15828 * 3 2 1 6 6 N 1.46502 * 109.47178 * 64.99538 * 5 3 2 7 7 C 1.39780 * 119.99919 * 180.02562 * 6 5 3 8 8 C 1.38951 * 120.00659 * 359.72641 * 7 6 5 9 9 C 1.38016 * 119.99571 * 179.72085 * 8 7 6 10 10 C 1.38897 * 119.99999 * 0.55568 * 9 8 7 11 11 O 1.35800 * 119.99090 * 179.69959 * 10 9 8 12 12 C 1.34813 * 117.00179 * 185.58409 * 11 10 9 13 13 H 1.07998 * 119.99422 * 354.93766 * 12 11 10 14 14 C 1.38614 * 120.00253 * 174.94084 * 12 11 10 15 15 N 1.31588 * 119.99745 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00252 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46703 * 90.00028 * 16 14 12 18 18 H 1.48500 * 109.47331 * 210.00037 * 16 14 12 19 19 H 1.48499 * 109.46969 * 330.00483 * 16 14 12 20 20 C 1.38895 * 120.01581 * 359.72044 * 10 9 8 21 21 C 1.38007 * 120.00947 * 0.02562 * 20 10 9 22 22 C 1.52995 * 109.47110 * 305.15359 * 3 2 1 23 23 C 1.53002 * 117.51837 * 226.32342 * 22 3 2 24 24 C 1.52998 * 117.50090 * 294.95516 * 22 3 2 25 25 H 1.09005 * 109.46845 * 64.88835 * 1 2 3 26 26 H 1.08998 * 109.47131 * 184.89097 * 1 2 3 27 27 H 1.09004 * 109.46958 * 304.89098 * 1 2 3 28 28 H 1.09001 * 109.47449 * 180.02562 * 4 3 2 29 29 H 1.09004 * 109.47631 * 300.00165 * 4 3 2 30 30 H 1.09002 * 109.47122 * 60.00153 * 4 3 2 31 31 H 1.08999 * 109.47147 * 184.99586 * 5 3 2 32 32 H 1.09004 * 109.47172 * 304.99604 * 5 3 2 33 33 H 0.96997 * 120.00274 * 0.02562 * 6 5 3 34 34 H 1.08001 * 120.00371 * 359.97438 * 8 7 6 35 35 H 1.07998 * 119.99974 * 180.24994 * 9 8 7 36 36 H 0.97008 * 119.99787 * 180.02562 * 15 14 12 37 37 H 1.08003 * 119.99955 * 179.97438 * 20 10 9 38 38 H 1.07992 * 120.00945 * 179.97438 * 21 20 10 39 39 H 1.09002 * 115.54951 * 80.62743 * 22 3 2 40 40 H 1.08998 * 117.50259 * 214.97362 * 23 22 3 41 41 H 1.09002 * 117.49635 * 359.97438 * 23 22 3 42 42 H 1.09000 * 117.49912 * 359.97438 * 24 22 3 43 43 H 1.09001 * 117.49530 * 144.97530 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5301 1.1871 -0.1296 5 6 1.6640 2.0179 1.3090 6 7 2.2927 1.3137 2.4294 7 6 2.1180 1.7810 3.7351 8 6 1.3527 2.9167 3.9701 9 6 1.1756 3.3746 5.2600 10 6 1.7718 2.7069 6.3220 11 8 1.6023 3.1611 7.5905 12 6 2.2996 2.5385 8.5619 13 1 2.8926 1.6670 8.3269 14 6 2.2555 3.0167 9.8621 15 7 1.5325 4.0783 10.1485 16 14 3.2211 2.1535 11.2082 17 1 4.5797 2.7459 11.3003 18 1 2.5191 2.3209 12.5061 19 1 3.3322 0.7077 10.8882 20 6 2.5415 1.5749 6.0868 21 6 2.7146 1.1135 4.7978 22 6 1.4589 2.1092 -1.1794 23 6 2.4608 2.8882 -2.0340 24 6 1.8034 1.6227 -2.5884 25 1 -0.3633 0.4362 -0.9306 26 1 -0.3633 -1.0239 0.0876 27 1 -0.3633 0.5879 0.8430 28 1 3.9736 2.1828 -0.1291 29 1 3.9230 0.6145 0.7107 30 1 3.7768 0.6795 -1.0621 31 1 2.0311 3.0436 1.2726 32 1 0.5824 2.0237 1.4445 33 1 2.8302 0.5232 2.2651 34 1 0.8932 3.4388 3.1439 35 1 0.5775 4.2550 5.4431 36 1 1.5019 4.4132 11.0584 37 1 3.0053 1.0561 6.9128 38 1 3.3135 0.2336 4.6149 39 1 0.4753 2.5534 -1.0267 40 1 2.1364 3.8447 -2.4436 41 1 3.5131 2.8285 -1.7557 42 1 2.4232 0.7303 -2.6753 43 1 1.0462 1.7465 -3.3627 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332961803.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:43 Heat of formation + Delta-G solvation = -30.555796 kcal Electronic energy + Delta-G solvation = -22914.361709 eV Core-core repulsion = 19539.880749 eV Total energy + Delta-G solvation = -3374.480959 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.04551 -40.48510 -38.57508 -37.06590 -35.66704 -34.10345 -32.11927 -31.75074 -29.16642 -27.92836 -27.13498 -26.75256 -24.36870 -23.40472 -23.17209 -22.14099 -20.21934 -19.63163 -18.85969 -18.14497 -17.65350 -16.87478 -16.41739 -16.27834 -16.07251 -15.88481 -15.38861 -15.18820 -15.08476 -14.64417 -14.33068 -14.28885 -14.07696 -13.62960 -13.44600 -13.36030 -12.98702 -12.90830 -12.69020 -12.52696 -12.47780 -12.28512 -12.09970 -12.07961 -11.56646 -11.30161 -11.10635 -11.08759 -10.91313 -10.44988 -10.17513 -9.77524 -8.38903 -7.92719 -6.02472 0.58574 0.93726 1.36931 1.46874 1.54270 2.23095 2.45955 2.78464 2.91843 3.13436 3.25833 3.55501 3.68400 3.78174 3.92609 4.09451 4.12708 4.17616 4.19025 4.35652 4.44165 4.56822 4.58660 4.64537 4.69082 4.73063 4.81449 4.84965 4.89065 4.97363 4.98775 5.03769 5.13294 5.16399 5.27708 5.29291 5.35911 5.47318 5.54933 5.78781 5.98433 6.11906 6.26754 6.60988 7.01437 7.07209 7.93920 8.85712 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.037932 B = 0.002763 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.984125 B =10130.229622 C =10275.113762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.387 6.387 3 C 0.142 3.858 4 C -0.142 4.142 5 C 0.110 3.890 6 N -0.738 5.738 7 C 0.154 3.846 8 C -0.146 4.146 9 C -0.154 4.154 10 C 0.062 3.938 11 O -0.242 6.242 12 C -0.406 4.406 13 H 0.098 0.902 14 C -0.029 4.029 15 N -0.927 5.927 16 Si 1.017 2.983 17 H -0.264 1.264 18 H -0.273 1.273 19 H -0.254 1.254 20 C -0.192 4.192 21 C -0.146 4.146 22 C -0.193 4.193 23 C -0.170 4.170 24 C -0.161 4.161 25 H 0.055 0.945 26 H 0.089 0.911 27 H 0.038 0.962 28 H 0.084 0.916 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.402 0.598 34 H 0.140 0.860 35 H 0.113 0.887 36 H 0.270 0.730 37 H 0.119 0.881 38 H 0.136 0.864 39 H 0.108 0.892 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.095 0.905 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.983 -6.708 -25.884 26.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.306 6.306 3 C 0.102 3.898 4 C -0.199 4.199 5 C -0.015 4.015 6 N -0.373 5.373 7 C 0.053 3.947 8 C -0.168 4.168 9 C -0.174 4.174 10 C 0.013 3.987 11 O -0.151 6.151 12 C -0.482 4.482 13 H 0.115 0.885 14 C -0.225 4.225 15 N -0.567 5.567 16 Si 0.836 3.164 17 H -0.189 1.189 18 H -0.197 1.197 19 H -0.178 1.178 20 C -0.211 4.211 21 C -0.168 4.168 22 C -0.212 4.212 23 C -0.206 4.206 24 C -0.198 4.198 25 H 0.073 0.927 26 H 0.107 0.893 27 H 0.057 0.943 28 H 0.103 0.897 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.238 0.762 34 H 0.158 0.842 35 H 0.131 0.869 36 H 0.078 0.922 37 H 0.137 0.863 38 H 0.154 0.846 39 H 0.126 0.874 40 H 0.122 0.878 41 H 0.125 0.875 42 H 0.113 0.887 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.797 -6.463 -25.764 26.623 hybrid contribution 0.017 -0.135 1.033 1.042 sum 1.814 -6.599 -24.731 25.660 Atomic orbital electron populations 1.22810 0.80640 1.03060 1.00490 1.87943 1.20591 1.27246 1.94832 1.21113 0.94632 0.82741 0.91289 1.21899 0.91685 1.03336 1.02956 1.21802 0.97473 0.96370 0.85868 1.44223 1.58770 1.33080 1.01267 1.17529 0.97396 0.94342 0.85428 1.20400 1.03272 0.97897 0.95257 1.20222 1.04501 1.01572 0.91123 1.19716 0.98048 0.95071 0.85903 1.83934 1.62189 1.56425 1.12507 1.21750 1.27274 1.11816 0.87376 0.88483 1.26526 0.98734 0.97306 0.99918 1.70212 1.40899 1.24575 1.21042 0.84613 0.77481 0.78488 0.75786 1.18941 1.19737 1.17750 1.21044 1.03892 0.98340 0.97868 1.20474 1.03981 1.01864 0.90516 1.22720 1.01161 1.04952 0.92356 1.23218 0.98727 0.96340 1.02349 1.22920 1.03678 0.98489 0.94731 0.92670 0.89296 0.94335 0.89683 0.92120 0.90910 0.91462 0.92696 0.76200 0.84238 0.86888 0.92156 0.86343 0.84574 0.87351 0.87817 0.87502 0.88669 0.87920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.33 113.37 1.17 1.59 16 2 O -0.39 -7.46 10.27 -148.98 -1.53 -8.99 16 3 C 0.14 2.34 0.63 -10.79 -0.01 2.33 16 4 C -0.14 -2.10 7.27 71.98 0.52 -1.58 16 5 C 0.11 2.22 3.75 86.38 0.32 2.54 16 6 N -0.74 -18.22 5.37 -339.24 -1.82 -20.04 16 7 C 0.15 5.06 6.66 38.22 0.25 5.31 16 8 C -0.15 -5.14 9.30 22.39 0.21 -4.93 16 9 C -0.15 -6.83 9.98 22.37 0.22 -6.60 16 10 C 0.06 3.21 6.65 22.59 0.15 3.36 16 11 O -0.24 -15.12 9.76 -23.12 -0.23 -15.35 16 12 C -0.41 -24.42 9.48 67.91 0.64 -23.78 16 13 H 0.10 5.37 5.20 -2.91 -0.02 5.36 16 14 C -0.03 -1.69 5.49 84.82 0.47 -1.23 16 15 N -0.93 -58.75 13.67 21.61 0.30 -58.46 16 16 Si 1.02 44.32 29.55 68.60 2.03 46.35 16 17 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 18 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 19 H -0.25 -10.27 7.11 99.48 0.71 -9.56 16 20 C -0.19 -8.67 9.16 22.37 0.20 -8.47 16 21 C -0.15 -5.28 9.89 22.39 0.22 -5.06 16 22 C -0.19 -2.58 3.78 -10.80 -0.04 -2.62 16 23 C -0.17 -1.85 9.65 30.60 0.30 -1.56 16 24 C -0.16 -1.83 9.85 30.59 0.30 -1.53 16 25 H 0.05 0.74 7.13 -2.38 -0.02 0.72 16 26 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.04 0.68 6.24 -2.38 -0.01 0.67 16 28 H 0.08 1.12 6.74 -2.39 -0.02 1.11 16 29 H 0.06 0.98 6.57 -2.39 -0.02 0.97 16 30 H 0.07 0.96 6.96 -2.39 -0.02 0.95 16 31 H 0.07 1.34 7.94 -2.39 -0.02 1.32 16 32 H 0.05 1.15 6.15 -2.38 -0.01 1.14 16 33 H 0.40 9.10 7.00 -92.71 -0.65 8.46 16 34 H 0.14 4.01 6.73 -2.91 -0.02 3.99 16 35 H 0.11 4.93 8.06 -2.91 -0.02 4.90 16 36 H 0.27 15.65 8.31 -92.70 -0.77 14.88 16 37 H 0.12 5.44 5.63 -2.91 -0.02 5.42 16 38 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 39 H 0.11 1.41 8.02 -2.39 -0.02 1.39 16 40 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.11 1.10 5.89 -2.39 -0.01 1.08 16 42 H 0.09 1.16 7.29 -2.39 -0.02 1.14 16 43 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -72.57 344.17 4.07 -68.51 By element: Atomic # 1 Polarization: 29.81 SS G_CDS: 0.38 Total: 30.19 kcal Atomic # 6 Polarization: -47.15 SS G_CDS: 4.94 Total: -42.21 kcal Atomic # 7 Polarization: -76.97 SS G_CDS: -1.53 Total: -78.50 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -1.76 Total: -24.34 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -72.57 4.07 -68.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332961803.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.952 kcal (2) G-P(sol) polarization free energy of solvation -72.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds