Wall clock time and date at job start Tue Mar 31 2020 06:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34707 * 117.00362 * 2 1 4 4 O 1.21474 * 119.99821 * 359.97438 * 3 2 1 5 5 C 1.47725 * 120.00193 * 179.97438 * 3 2 1 6 6 C 1.39651 * 120.15070 * 359.97438 * 5 3 2 7 7 C 1.37925 * 119.84795 * 180.02562 * 6 5 3 8 8 C 1.38386 * 120.14979 * 359.72574 * 7 6 5 9 9 C 1.38351 * 120.30433 * 0.54810 * 8 7 6 10 10 C 1.50697 * 119.92338 * 179.72805 * 9 8 7 11 11 N 1.46905 * 109.46903 * 266.75452 * 10 9 8 12 12 C 1.46901 * 110.99861 * 198.68552 * 11 10 9 13 13 C 1.50706 * 109.46646 * 157.65027 * 12 11 10 14 14 H 1.07992 * 120.00121 * 358.51580 * 13 12 11 15 15 C 1.37879 * 119.99463 * 178.50897 * 13 12 11 16 16 N 1.31517 * 119.99866 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00305 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.47366 * 89.99170 * 17 15 13 19 19 H 1.48495 * 109.47174 * 209.99844 * 17 15 13 20 20 H 1.48506 * 109.46972 * 329.99259 * 17 15 13 21 21 C 1.46897 * 110.99688 * 74.72947 * 11 10 9 22 22 C 1.53002 * 109.46978 * 189.46694 * 21 11 10 23 23 C 1.53004 * 109.46786 * 69.47097 * 21 11 10 24 24 C 1.37964 * 120.14677 * 359.45330 * 9 8 7 25 25 H 1.08993 * 109.47100 * 300.00179 * 1 2 3 26 26 H 1.08999 * 109.46740 * 59.99739 * 1 2 3 27 27 H 1.09001 * 109.47276 * 179.97438 * 1 2 3 28 28 H 1.07998 * 120.07318 * 359.97438 * 6 5 3 29 29 H 1.08002 * 119.92116 * 180.02562 * 7 6 5 30 30 H 1.07998 * 119.84772 * 180.27488 * 8 7 6 31 31 H 1.09008 * 109.46837 * 146.75992 * 10 9 8 32 32 H 1.08993 * 109.47218 * 26.75944 * 10 9 8 33 33 H 1.08998 * 109.47083 * 277.64642 * 12 11 10 34 34 H 1.09000 * 109.47287 * 37.65160 * 12 11 10 35 35 H 0.96992 * 120.00026 * 180.02562 * 16 15 13 36 36 H 1.08992 * 109.47678 * 309.47217 * 21 11 10 37 37 H 1.09006 * 109.47065 * 291.13887 * 22 21 11 38 38 H 1.08992 * 109.47538 * 51.13911 * 22 21 11 39 39 H 1.09006 * 109.46931 * 171.14373 * 22 21 11 40 40 H 1.09009 * 109.47033 * 187.09438 * 23 21 11 41 41 H 1.08996 * 109.47019 * 307.09259 * 23 21 11 42 42 H 1.08999 * 109.47491 * 67.09680 * 23 21 11 43 43 H 1.07995 * 120.07559 * 180.25489 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2002 0.0000 4 8 1.4021 2.2190 -0.0005 5 6 3.5389 1.2775 0.0006 6 6 4.3025 0.1083 0.0017 7 6 5.6795 0.1877 0.0027 8 6 6.3045 1.4223 -0.0030 9 6 5.5541 2.5847 0.0016 10 6 6.2437 3.9246 0.0015 11 7 6.4028 4.3935 1.3846 12 6 6.6505 5.8409 1.4245 13 6 6.2707 6.3782 2.7804 14 1 5.8617 5.7156 3.5286 15 6 6.4457 7.7158 3.0655 16 7 6.1139 8.1849 4.2485 17 14 7.1528 8.8621 1.7711 18 1 6.0482 9.4344 0.9602 19 1 7.8988 9.9601 2.4366 20 1 8.0736 8.1028 0.8873 21 6 7.4731 3.6571 2.0702 22 6 7.4541 4.0001 3.5611 23 6 8.8259 4.0506 1.4735 24 6 4.1760 2.5197 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.8160 -0.8559 0.0025 29 1 6.2712 -0.7158 0.0031 30 1 7.3830 1.4788 -0.0066 31 1 5.6437 4.6420 -0.5586 32 1 7.2242 3.8286 -0.4648 33 1 7.7073 6.0339 1.2402 34 1 6.0521 6.3333 0.6580 35 1 6.2366 9.1259 4.4490 36 1 7.3172 2.5860 1.9418 37 1 7.7646 5.0358 3.6996 38 1 6.4451 3.8681 3.9515 39 1 8.1392 3.3410 4.0944 40 1 9.6064 3.4152 1.8924 41 1 8.7963 3.9242 0.3913 42 1 9.0390 5.0926 1.7119 43 1 3.5914 3.4278 0.0000 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339688722.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:41 Heat of formation + Delta-G solvation = -47.716516 kcal Electronic energy + Delta-G solvation = -23412.479553 eV Core-core repulsion = 20037.254449 eV Total energy + Delta-G solvation = -3375.225104 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.58422 -39.22198 -37.55405 -36.43647 -32.83780 -32.28843 -31.34690 -30.29382 -28.17998 -27.62823 -26.45041 -24.65151 -24.04577 -22.02060 -21.60446 -20.58766 -18.72666 -17.59538 -17.15413 -16.67307 -16.41295 -16.03926 -15.58608 -15.04477 -14.72887 -14.24417 -13.96932 -13.63026 -13.53740 -13.36096 -13.28522 -12.59086 -12.48463 -12.27698 -12.24240 -11.83782 -11.58289 -11.35754 -11.30645 -11.12277 -10.95683 -10.91679 -10.65252 -10.52953 -10.48615 -10.30896 -9.99270 -9.69744 -9.06156 -8.98454 -8.74045 -8.48738 -7.33156 -6.00042 -3.94080 0.72563 1.40345 2.54560 2.59856 3.29394 3.36826 3.37976 3.78872 4.44637 4.63435 4.77883 4.82426 4.94343 4.97289 5.03021 5.13119 5.29813 5.32791 5.35191 5.38366 5.56127 5.65948 5.74357 5.78929 5.93925 5.98962 6.04574 6.18512 6.23995 6.30415 6.38526 6.43995 6.51363 6.59613 6.67366 6.85900 6.88720 6.90885 7.12151 7.46389 7.67871 7.70099 7.92008 8.07002 8.71076 9.12485 9.61300 11.12486 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017571 B = 0.004176 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.140627 B = 6703.720467 C = 7570.217514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.358 6.358 3 C 0.509 3.491 4 O -0.502 6.502 5 C -0.131 4.131 6 C -0.071 4.071 7 C -0.136 4.136 8 C -0.078 4.078 9 C -0.070 4.070 10 C 0.082 3.918 11 N -0.515 5.515 12 C 0.153 3.847 13 C -0.499 4.499 14 H 0.090 0.910 15 C 0.066 3.934 16 N -0.901 5.901 17 Si 0.868 3.132 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.269 1.269 21 C 0.087 3.913 22 C -0.138 4.138 23 C -0.187 4.187 24 C -0.030 4.030 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.100 0.900 28 H 0.133 0.867 29 H 0.128 0.872 30 H 0.125 0.875 31 H 0.079 0.921 32 H 0.042 0.958 33 H 0.004 0.996 34 H 0.018 0.982 35 H 0.262 0.738 36 H 0.063 0.937 37 H 0.090 0.910 38 H 0.058 0.942 39 H 0.029 0.971 40 H 0.050 0.950 41 H 0.045 0.955 42 H 0.068 0.932 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.050 -18.023 -10.353 20.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.275 6.275 3 C 0.354 3.646 4 O -0.390 6.390 5 C -0.132 4.132 6 C -0.089 4.089 7 C -0.154 4.154 8 C -0.097 4.097 9 C -0.071 4.071 10 C -0.046 4.046 11 N -0.238 5.238 12 C 0.027 3.973 13 C -0.538 4.538 14 H 0.108 0.892 15 C -0.135 4.135 16 N -0.541 5.541 17 Si 0.696 3.304 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.194 1.194 21 C -0.021 4.021 22 C -0.195 4.195 23 C -0.245 4.245 24 C -0.049 4.049 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.119 0.881 28 H 0.151 0.849 29 H 0.146 0.854 30 H 0.143 0.857 31 H 0.098 0.902 32 H 0.060 0.940 33 H 0.021 0.979 34 H 0.036 0.964 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.108 0.892 38 H 0.077 0.923 39 H 0.048 0.952 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.087 0.913 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.735 -17.622 -9.988 20.440 hybrid contribution 0.855 0.957 -1.031 1.646 sum -1.880 -16.665 -11.019 20.067 Atomic orbital electron populations 1.23260 0.76170 1.03550 1.02733 1.86529 1.23422 1.32921 1.84618 1.21308 0.89290 0.81329 0.72706 1.90860 1.66754 1.35951 1.45463 1.19040 0.88578 0.95143 1.10467 1.21341 0.93935 0.97539 0.96129 1.21056 0.94255 0.97805 1.02288 1.21382 1.00160 0.92028 0.96122 1.19897 0.92987 0.95671 0.98560 1.21161 0.98294 0.92516 0.92658 1.62239 1.43871 1.06488 1.11240 1.20383 0.95148 0.83022 0.98727 1.21208 1.40895 0.94076 0.97594 0.89198 1.24887 0.95638 0.97856 0.95073 1.69883 1.48857 1.14444 1.20869 0.86981 0.79744 0.81241 0.82480 1.20320 1.21367 1.19376 1.21544 0.88069 0.96725 0.95806 1.22041 1.01100 1.03377 0.93026 1.22503 0.99106 1.02973 0.99959 1.21189 0.94205 0.96620 0.92851 0.91733 0.91900 0.88115 0.84932 0.85442 0.85690 0.90213 0.93998 0.97855 0.96369 0.92795 0.91920 0.89161 0.92311 0.95212 0.93102 0.93610 0.91276 0.84286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.57 101.05 1.07 1.39 16 2 O -0.36 -4.26 9.82 -40.51 -0.40 -4.66 16 3 C 0.51 7.41 7.90 34.61 0.27 7.68 16 4 O -0.50 -8.73 16.14 -19.25 -0.31 -9.04 16 5 C -0.13 -1.84 5.87 -104.98 -0.62 -2.45 16 6 C -0.07 -0.81 9.62 -39.17 -0.38 -1.19 16 7 C -0.14 -1.45 10.03 -39.64 -0.40 -1.85 16 8 C -0.08 -0.96 8.28 -39.49 -0.33 -1.28 16 9 C -0.07 -1.03 5.05 -104.68 -0.53 -1.56 16 10 C 0.08 1.33 5.02 -4.97 -0.02 1.31 16 11 N -0.51 -10.22 4.38 -229.51 -1.01 -11.22 16 12 C 0.15 3.53 3.60 -4.97 -0.02 3.52 16 13 C -0.50 -13.60 7.31 -34.44 -0.25 -13.85 16 14 H 0.09 2.67 6.16 -52.49 -0.32 2.35 16 15 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 16 N -0.90 -27.22 13.96 55.43 0.77 -26.44 16 17 Si 0.87 21.15 27.50 -169.99 -4.67 16.48 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.27 -6.26 6.50 56.52 0.37 -5.89 16 21 C 0.09 1.56 2.83 -67.71 -0.19 1.37 16 22 C -0.14 -2.74 7.77 37.16 0.29 -2.45 16 23 C -0.19 -3.03 8.42 37.16 0.31 -2.72 16 24 C -0.03 -0.46 9.26 -39.17 -0.36 -0.82 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.13 1.24 7.61 -52.49 -0.40 0.84 16 29 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 30 H 0.13 1.34 7.88 -52.49 -0.41 0.92 16 31 H 0.08 1.30 7.55 -51.92 -0.39 0.91 16 32 H 0.04 0.62 5.99 -51.93 -0.31 0.31 16 33 H 0.00 0.09 4.42 -51.93 -0.23 -0.14 16 34 H 0.02 0.43 7.06 -51.93 -0.37 0.06 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.06 1.02 6.09 -51.93 -0.32 0.70 16 37 H 0.09 2.07 5.93 -51.93 -0.31 1.76 16 38 H 0.06 1.26 7.39 -51.93 -0.38 0.88 16 39 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 41 H 0.04 0.67 6.22 -51.93 -0.32 0.35 16 42 H 0.07 1.28 6.32 -51.93 -0.33 0.95 16 43 H 0.14 2.32 7.65 -52.49 -0.40 1.92 16 LS Contribution 342.86 15.07 5.17 5.17 Total: -1.00 -31.50 342.86 -7.90 -39.40 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -6.20 Total: 1.45 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: -1.25 Total: -11.13 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: -0.23 Total: -37.67 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -0.71 Total: -13.70 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.50 -7.90 -39.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339688722.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.317 kcal (2) G-P(sol) polarization free energy of solvation -31.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds