Wall clock time and date at job start Tue Mar 31 2020 06:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34707 * 117.00362 * 2 1 4 4 O 1.21474 * 119.99821 * 359.97438 * 3 2 1 5 5 C 1.47725 * 120.00193 * 179.97438 * 3 2 1 6 6 C 1.39651 * 120.15070 * 359.97438 * 5 3 2 7 7 C 1.37925 * 119.84795 * 180.02562 * 6 5 3 8 8 C 1.38386 * 120.14979 * 359.72574 * 7 6 5 9 9 C 1.38351 * 120.30433 * 0.54810 * 8 7 6 10 10 C 1.50697 * 119.92338 * 179.72805 * 9 8 7 11 11 N 1.46905 * 109.46903 * 266.75452 * 10 9 8 12 12 C 1.46901 * 110.99861 * 198.68552 * 11 10 9 13 13 C 1.50706 * 109.46646 * 157.65027 * 12 11 10 14 14 H 1.07992 * 120.00121 * 358.51580 * 13 12 11 15 15 C 1.37879 * 119.99463 * 178.50897 * 13 12 11 16 16 N 1.31517 * 119.99866 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00305 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.47366 * 89.99170 * 17 15 13 19 19 H 1.48495 * 109.47174 * 209.99844 * 17 15 13 20 20 H 1.48506 * 109.46972 * 329.99259 * 17 15 13 21 21 C 1.46897 * 110.99688 * 74.72947 * 11 10 9 22 22 C 1.53002 * 109.46978 * 189.46694 * 21 11 10 23 23 C 1.53004 * 109.46786 * 69.47097 * 21 11 10 24 24 C 1.37964 * 120.14677 * 359.45330 * 9 8 7 25 25 H 1.08993 * 109.47100 * 300.00179 * 1 2 3 26 26 H 1.08999 * 109.46740 * 59.99739 * 1 2 3 27 27 H 1.09001 * 109.47276 * 179.97438 * 1 2 3 28 28 H 1.07998 * 120.07318 * 359.97438 * 6 5 3 29 29 H 1.08002 * 119.92116 * 180.02562 * 7 6 5 30 30 H 1.07998 * 119.84772 * 180.27488 * 8 7 6 31 31 H 1.09008 * 109.46837 * 146.75992 * 10 9 8 32 32 H 1.08993 * 109.47218 * 26.75944 * 10 9 8 33 33 H 1.08998 * 109.47083 * 277.64642 * 12 11 10 34 34 H 1.09000 * 109.47287 * 37.65160 * 12 11 10 35 35 H 0.96992 * 120.00026 * 180.02562 * 16 15 13 36 36 H 1.08992 * 109.47678 * 309.47217 * 21 11 10 37 37 H 1.09006 * 109.47065 * 291.13887 * 22 21 11 38 38 H 1.08992 * 109.47538 * 51.13911 * 22 21 11 39 39 H 1.09006 * 109.46931 * 171.14373 * 22 21 11 40 40 H 1.09009 * 109.47033 * 187.09438 * 23 21 11 41 41 H 1.08996 * 109.47019 * 307.09259 * 23 21 11 42 42 H 1.08999 * 109.47491 * 67.09680 * 23 21 11 43 43 H 1.07995 * 120.07559 * 180.25489 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2002 0.0000 4 8 1.4021 2.2190 -0.0005 5 6 3.5389 1.2775 0.0006 6 6 4.3025 0.1083 0.0017 7 6 5.6795 0.1877 0.0027 8 6 6.3045 1.4223 -0.0030 9 6 5.5541 2.5847 0.0016 10 6 6.2437 3.9246 0.0015 11 7 6.4028 4.3935 1.3846 12 6 6.6505 5.8409 1.4245 13 6 6.2707 6.3782 2.7804 14 1 5.8617 5.7156 3.5286 15 6 6.4457 7.7158 3.0655 16 7 6.1139 8.1849 4.2485 17 14 7.1528 8.8621 1.7711 18 1 6.0482 9.4344 0.9602 19 1 7.8988 9.9601 2.4366 20 1 8.0736 8.1028 0.8873 21 6 7.4731 3.6571 2.0702 22 6 7.4541 4.0001 3.5611 23 6 8.8259 4.0506 1.4735 24 6 4.1760 2.5197 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.8160 -0.8559 0.0025 29 1 6.2712 -0.7158 0.0031 30 1 7.3830 1.4788 -0.0066 31 1 5.6437 4.6420 -0.5586 32 1 7.2242 3.8286 -0.4648 33 1 7.7073 6.0339 1.2402 34 1 6.0521 6.3333 0.6580 35 1 6.2366 9.1259 4.4490 36 1 7.3172 2.5860 1.9418 37 1 7.7646 5.0358 3.6996 38 1 6.4451 3.8681 3.9515 39 1 8.1392 3.3410 4.0944 40 1 9.6064 3.4152 1.8924 41 1 8.7963 3.9242 0.3913 42 1 9.0390 5.0926 1.7119 43 1 3.5914 3.4278 0.0000 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339688722.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:40 Heat of formation + Delta-G solvation = -67.328870 kcal Electronic energy + Delta-G solvation = -23413.330009 eV Core-core repulsion = 20037.254449 eV Total energy + Delta-G solvation = -3376.075560 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.64695 -40.37997 -38.90101 -37.51464 -34.71931 -33.70263 -32.40419 -31.75341 -29.72153 -28.63207 -27.90133 -26.01119 -25.08321 -23.78289 -22.73738 -21.65010 -20.23677 -18.99620 -18.48227 -18.14956 -17.42131 -17.05169 -16.96887 -16.50545 -16.14327 -15.59328 -15.32359 -14.88303 -14.63418 -14.55148 -14.50758 -14.38759 -13.77523 -13.45276 -13.30765 -13.10914 -12.99192 -12.93769 -12.65650 -12.50911 -12.46899 -12.35904 -11.93660 -11.90764 -11.85374 -11.76412 -11.62182 -11.35755 -11.03897 -10.65618 -9.98369 -9.77941 -8.85277 -8.18801 -6.16435 -0.30181 0.40766 1.35600 1.36055 1.45426 1.47919 1.65282 2.38563 2.75318 3.13563 3.41090 3.68718 3.79000 3.96553 4.14722 4.18522 4.27145 4.29771 4.31341 4.37615 4.40272 4.51913 4.59319 4.68083 4.70281 4.81422 4.90251 4.91627 4.99088 5.04539 5.09159 5.18840 5.19772 5.22615 5.32910 5.44131 5.53743 5.61510 5.67712 5.77290 5.92754 6.10942 6.54162 6.63652 6.74527 6.89237 7.42527 8.97257 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017571 B = 0.004176 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.140627 B = 6703.720467 C = 7570.217514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.352 6.352 3 C 0.508 3.492 4 O -0.544 6.544 5 C -0.148 4.148 6 C -0.059 4.059 7 C -0.123 4.123 8 C -0.072 4.072 9 C -0.085 4.085 10 C 0.085 3.915 11 N -0.538 5.538 12 C 0.163 3.837 13 C -0.493 4.493 14 H 0.050 0.950 15 C 0.004 3.996 16 N -0.952 5.952 17 Si 0.935 3.065 18 H -0.274 1.274 19 H -0.287 1.287 20 H -0.247 1.247 21 C 0.088 3.912 22 C -0.131 4.131 23 C -0.179 4.179 24 C -0.054 4.054 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.141 0.859 28 H 0.159 0.841 29 H 0.170 0.830 30 H 0.150 0.850 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.012 0.988 34 H 0.014 0.986 35 H 0.262 0.738 36 H 0.089 0.911 37 H 0.050 0.950 38 H 0.028 0.972 39 H 0.059 0.941 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.040 0.960 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.087 -21.253 -12.506 24.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.268 6.268 3 C 0.355 3.645 4 O -0.436 6.436 5 C -0.149 4.149 6 C -0.077 4.077 7 C -0.140 4.140 8 C -0.091 4.091 9 C -0.086 4.086 10 C -0.042 4.042 11 N -0.261 5.261 12 C 0.036 3.964 13 C -0.532 4.532 14 H 0.068 0.932 15 C -0.192 4.192 16 N -0.595 5.595 17 Si 0.760 3.240 18 H -0.200 1.200 19 H -0.213 1.213 20 H -0.170 1.170 21 C -0.020 4.020 22 C -0.188 4.188 23 C -0.238 4.238 24 C -0.073 4.073 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.159 0.841 28 H 0.177 0.823 29 H 0.187 0.813 30 H 0.168 0.832 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.029 0.971 34 H 0.032 0.968 35 H 0.071 0.929 36 H 0.107 0.893 37 H 0.069 0.931 38 H 0.047 0.953 39 H 0.078 0.922 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.059 0.941 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.767 -20.902 -12.163 24.196 hybrid contribution 0.149 1.768 -0.302 1.799 sum -0.619 -19.135 -12.465 22.845 Atomic orbital electron populations 1.23602 0.74381 1.06061 1.02427 1.86513 1.25145 1.31236 1.83892 1.21562 0.89740 0.81484 0.71691 1.90837 1.67676 1.37419 1.47655 1.19127 0.88510 0.95665 1.11639 1.21688 0.94489 0.97417 0.94141 1.21511 0.93986 0.98696 0.99817 1.21670 1.01266 0.91481 0.94664 1.19763 0.92542 0.95849 1.00445 1.21147 0.99453 0.93288 0.90355 1.62061 1.45285 1.04700 1.14093 1.20116 0.95119 0.85455 0.95706 1.21437 1.39327 0.93666 0.98731 0.93203 1.25737 0.96449 0.99792 0.97177 1.70049 1.51246 1.14830 1.23340 0.85895 0.79323 0.78958 0.79848 1.20006 1.21265 1.17022 1.21598 0.88729 0.97779 0.93924 1.21894 0.99781 1.01632 0.95514 1.22405 0.98419 1.01685 1.01264 1.21054 0.94828 0.96377 0.95026 0.92438 0.91955 0.84118 0.82311 0.81265 0.83193 0.91379 0.91661 0.97081 0.96753 0.92905 0.89267 0.93057 0.95325 0.92195 0.90373 0.91575 0.94069 0.87409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.57 113.37 1.20 1.66 16 2 O -0.35 -7.92 9.82 -56.17 -0.55 -8.47 16 3 C 0.51 14.94 7.90 70.33 0.56 15.49 16 4 O -0.54 -19.93 16.14 19.92 0.32 -19.61 16 5 C -0.15 -4.06 5.87 -20.10 -0.12 -4.18 16 6 C -0.06 -1.15 9.62 22.54 0.22 -0.93 16 7 C -0.12 -1.99 10.03 22.23 0.22 -1.77 16 8 C -0.07 -1.47 8.28 22.33 0.18 -1.28 16 9 C -0.09 -2.38 5.05 -19.90 -0.10 -2.48 16 10 C 0.08 2.66 5.02 85.56 0.43 3.09 16 11 N -0.54 -21.24 4.38 -880.05 -3.86 -25.10 16 12 C 0.16 7.58 3.60 85.56 0.31 7.89 16 13 C -0.49 -28.02 7.31 25.60 0.19 -27.84 16 14 H 0.05 3.17 6.16 -2.91 -0.02 3.15 16 15 C 0.00 0.26 5.47 84.65 0.46 0.72 16 16 N -0.95 -60.23 13.96 21.45 0.30 -59.93 16 17 Si 0.94 44.39 27.50 68.60 1.89 46.28 16 18 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 19 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 20 H -0.25 -10.71 6.50 99.48 0.65 -10.07 16 21 C 0.09 2.99 2.83 44.92 0.13 3.12 16 22 C -0.13 -5.23 7.77 71.98 0.56 -4.68 16 23 C -0.18 -5.25 8.42 71.98 0.61 -4.64 16 24 C -0.05 -1.69 9.26 22.54 0.21 -1.48 16 25 H 0.06 1.02 8.14 -2.39 -0.02 1.01 16 26 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.14 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.16 2.24 7.61 -2.91 -0.02 2.22 16 29 H 0.17 1.44 8.06 -2.91 -0.02 1.41 16 30 H 0.15 2.31 7.88 -2.91 -0.02 2.29 16 31 H 0.07 2.25 7.55 -2.38 -0.02 2.23 16 32 H 0.07 1.73 5.99 -2.39 -0.01 1.71 16 33 H 0.01 0.52 4.42 -2.39 -0.01 0.51 16 34 H 0.01 0.68 7.06 -2.39 -0.02 0.66 16 35 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 36 H 0.09 2.59 6.09 -2.39 -0.01 2.57 16 37 H 0.05 2.44 5.93 -2.38 -0.01 2.42 16 38 H 0.03 1.27 7.39 -2.39 -0.02 1.25 16 39 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 40 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 41 H 0.07 1.67 6.22 -2.39 -0.01 1.65 16 42 H 0.04 1.44 6.32 -2.39 -0.02 1.42 16 43 H 0.11 3.95 7.65 -2.91 -0.02 3.93 16 Total: -1.00 -73.97 342.86 4.10 -69.88 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 0.95 Total: 14.25 kcal Atomic # 6 Polarization: -22.35 SS G_CDS: 5.05 Total: -17.30 kcal Atomic # 7 Polarization: -81.47 SS G_CDS: -3.56 Total: -85.03 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -0.23 Total: -28.08 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.89 Total: 46.28 kcal Total: -73.97 4.10 -69.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339688722.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.547 kcal (2) G-P(sol) polarization free energy of solvation -73.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds