Wall clock time and date at job start Tue Mar 31 2020 06:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47472 * 2 1 4 4 N 1.46501 * 109.46951 * 120.00137 * 2 1 3 5 5 C 1.46506 * 119.99782 * 294.97256 * 4 2 1 6 6 C 1.50700 * 109.46978 * 263.32717 * 5 4 2 7 7 H 1.08000 * 120.00126 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99746 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99972 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 119.99732 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47149 * 60.00569 * 10 8 6 12 12 H 1.48507 * 109.46968 * 180.02562 * 10 8 6 13 13 H 1.48494 * 109.47480 * 300.00337 * 10 8 6 14 14 C 1.34778 * 120.00294 * 114.97334 * 4 2 1 15 15 O 1.21695 * 119.99719 * 3.58466 * 14 4 2 16 16 C 1.46652 * 119.99860 * 183.58550 * 14 4 2 17 17 C 1.36778 * 125.95363 * 173.52918 * 16 14 4 18 18 C 1.39661 * 106.53111 * 179.88814 * 17 16 14 19 19 C 1.35569 * 107.41302 * 0.42973 * 18 17 16 20 20 O 1.33498 * 108.61181 * 359.67866 * 19 18 17 21 21 C 1.50999 * 123.79353 * 179.60427 * 19 18 17 22 22 C 1.53324 * 108.41665 * 343.27759 * 21 19 18 23 23 C 1.53120 * 109.55200 * 50.17050 * 22 21 19 24 24 C 1.50697 * 128.12351 * 180.22651 * 18 17 16 25 25 H 1.09000 * 109.46797 * 300.00355 * 1 2 3 26 26 H 1.09004 * 109.46635 * 59.99910 * 1 2 3 27 27 H 1.08998 * 109.47594 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46797 * 239.99645 * 2 1 3 29 29 H 1.09003 * 109.47030 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.46891 * 300.00074 * 3 2 1 31 31 H 1.08990 * 109.47422 * 59.99899 * 3 2 1 32 32 H 1.09002 * 109.47103 * 23.32813 * 5 4 2 33 33 H 1.09002 * 109.46878 * 143.32584 * 5 4 2 34 34 H 0.96994 * 120.00098 * 179.97438 * 9 8 6 35 35 H 1.07995 * 126.73335 * 0.02562 * 17 16 14 36 36 H 1.08998 * 109.67465 * 103.00794 * 21 19 18 37 37 H 1.08996 * 109.68062 * 223.50885 * 21 19 18 38 38 H 1.09001 * 109.46199 * 170.19418 * 22 21 19 39 39 H 1.09004 * 109.45769 * 290.14719 * 22 21 19 40 40 H 1.08999 * 109.47316 * 49.75699 * 23 22 21 41 41 H 1.09003 * 109.47507 * 169.77948 * 23 22 21 42 42 H 1.09001 * 109.68305 * 44.15355 * 24 18 17 43 43 H 1.08995 * 109.68340 * 283.59646 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7574 -0.1292 2.5240 6 6 2.9546 0.6661 2.9771 7 1 3.8228 0.7457 2.3397 8 6 2.9411 1.2930 4.2051 9 7 1.8837 1.1964 4.9811 10 14 4.4253 2.2781 4.7671 11 1 4.6815 3.3798 3.8048 12 1 4.1608 2.8474 6.1130 13 1 5.6138 1.3901 4.8307 14 6 2.7076 -1.8425 1.0752 15 8 2.9808 -2.2749 -0.0291 16 6 3.1282 -2.5747 2.2742 17 6 3.7189 -3.8082 2.2959 18 6 3.9479 -4.1155 3.6389 19 6 3.4860 -3.0766 4.3773 20 8 2.9945 -2.1512 3.5501 21 6 3.5418 -3.0277 5.8855 22 6 3.7887 -4.4481 6.4073 23 6 4.9783 -5.0662 5.6675 24 6 4.5810 -5.3559 4.2146 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1301 1.4423 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6769 1.9563 0.8899 32 1 0.8847 0.5223 2.4779 33 1 1.5701 -0.9381 3.2301 34 1 1.8744 1.6371 5.8451 35 1 3.9626 -4.4228 1.4420 36 1 4.3547 -2.3741 6.2016 37 1 2.5960 -2.6520 6.2758 38 1 4.0051 -4.4102 7.4750 39 1 2.9002 -5.0565 6.2385 40 1 5.8173 -4.3705 5.6832 41 1 5.2677 -5.9959 6.1575 42 1 5.4675 -5.6177 3.6369 43 1 3.8674 -6.1793 4.1863 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345843386.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:09 Heat of formation + Delta-G solvation = -37.226477 kcal Electronic energy + Delta-G solvation = -24584.396626 eV Core-core repulsion = 21209.626404 eV Total energy + Delta-G solvation = -3374.770222 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.16567 -39.00706 -36.83508 -35.85440 -32.94828 -32.48866 -31.44517 -29.83993 -28.59112 -27.22963 -26.57664 -24.15603 -23.06155 -22.36348 -21.55191 -20.38585 -19.07135 -18.14880 -16.82429 -16.42228 -15.98225 -15.64566 -15.21402 -14.53706 -14.40459 -13.98291 -13.67716 -13.64837 -13.33260 -13.02815 -12.48514 -12.46649 -12.39177 -12.27943 -12.26466 -11.92086 -11.66221 -11.61903 -11.25705 -10.98715 -10.79750 -10.78305 -10.77541 -10.60718 -10.38345 -10.21946 -9.95899 -9.65548 -9.40908 -9.09217 -8.47402 -7.90114 -7.57792 -6.10368 -4.13861 1.80226 2.84271 3.26199 3.30272 3.31424 3.35651 3.91670 3.94846 4.38850 4.87876 4.94077 4.95377 5.18437 5.23740 5.39072 5.39999 5.57373 5.65157 5.66963 5.67787 5.74405 5.81739 5.87192 6.00843 6.08147 6.09951 6.11013 6.15933 6.28391 6.37165 6.37449 6.40906 6.43772 6.54354 6.73592 6.81023 6.99078 7.00025 7.34765 7.53918 7.73568 7.84435 8.14198 8.27148 8.82120 8.95092 9.50327 10.97127 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012499 B = 0.007389 C = 0.005200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.637815 B = 3788.429054 C = 5383.294587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.135 3.865 3 C -0.151 4.151 4 N -0.581 5.581 5 C 0.234 3.766 6 C -0.519 4.519 7 H 0.056 0.944 8 C 0.069 3.931 9 N -0.891 5.891 10 Si 0.888 3.112 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.277 1.277 14 C 0.598 3.402 15 O -0.562 6.562 16 C -0.057 4.057 17 C -0.137 4.137 18 C -0.209 4.209 19 C 0.013 3.987 20 O -0.097 6.097 21 C -0.040 4.040 22 C -0.113 4.113 23 C -0.121 4.121 24 C -0.043 4.043 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.088 0.912 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.040 0.960 33 H 0.051 0.949 34 H 0.263 0.737 35 H 0.149 0.851 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.061 -8.547 0.814 8.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.031 3.969 3 C -0.209 4.209 4 N -0.310 5.310 5 C 0.115 3.885 6 C -0.558 4.558 7 H 0.074 0.926 8 C -0.133 4.133 9 N -0.530 5.530 10 Si 0.716 3.284 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.203 1.203 14 C 0.386 3.614 15 O -0.445 6.445 16 C -0.110 4.110 17 C -0.158 4.158 18 C -0.210 4.210 19 C -0.042 4.042 20 O 0.011 5.989 21 C -0.077 4.077 22 C -0.151 4.151 23 C -0.159 4.159 24 C -0.080 4.080 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.106 0.894 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.167 0.833 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.949 -8.357 0.518 8.427 hybrid contribution 0.908 0.655 0.405 1.190 sum 1.857 -7.702 0.923 7.976 Atomic orbital electron populations 1.22139 0.95654 1.01725 1.02136 1.20932 0.93529 0.93693 0.88700 1.22047 1.01670 0.95303 1.01892 1.48296 1.51716 1.21250 1.09712 1.19629 0.97396 0.94842 0.76667 1.21317 1.01134 1.31069 1.02247 0.92556 1.24811 0.95915 0.96358 0.96248 1.69911 1.28397 1.43885 1.10807 0.86711 0.83349 0.80497 0.77844 1.20228 1.21195 1.20271 1.16682 0.78211 0.80804 0.85669 1.90739 1.59014 1.69704 1.25042 1.22029 1.09294 0.96261 0.83417 1.21353 1.01815 0.95636 0.96961 1.19978 1.09263 0.99052 0.92731 1.22754 0.98936 0.88746 0.93780 1.84636 1.60321 1.39358 1.14566 1.20222 1.04014 0.97942 0.85517 1.21574 0.98969 0.95015 0.99534 1.21631 0.98252 1.00752 0.95237 1.19982 0.99324 0.93788 0.94950 0.91784 0.92118 0.92941 0.89389 0.92525 0.93051 0.90722 0.94219 0.93188 0.92760 0.83335 0.89517 0.89285 0.90867 0.91416 0.91587 0.91608 0.91218 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 9.26 37.16 0.34 -2.23 16 2 C 0.13 2.56 3.23 -67.93 -0.22 2.34 16 3 C -0.15 -2.74 8.65 37.16 0.32 -2.42 16 4 N -0.58 -12.89 2.37 -169.01 -0.40 -13.29 16 5 C 0.23 5.69 3.91 -5.19 -0.02 5.67 16 6 C -0.52 -13.62 7.49 -34.44 -0.26 -13.88 16 7 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 8 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 9 N -0.89 -24.29 13.29 55.43 0.74 -23.55 16 10 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 14 C 0.60 13.77 7.58 -12.86 -0.10 13.67 16 15 O -0.56 -13.43 16.21 5.19 0.08 -13.35 16 16 C -0.06 -1.26 6.74 -36.72 -0.25 -1.50 16 17 C -0.14 -2.63 10.61 -39.58 -0.42 -3.05 16 18 C -0.21 -3.61 5.93 -105.05 -0.62 -4.23 16 19 C 0.01 0.24 7.22 -35.12 -0.25 -0.02 16 20 O -0.10 -2.19 6.57 5.56 0.04 -2.15 16 21 C -0.04 -0.61 6.30 -27.57 -0.17 -0.79 16 22 C -0.11 -1.31 5.89 -26.50 -0.16 -1.47 16 23 C -0.12 -1.36 5.91 -26.47 -0.16 -1.52 16 24 C -0.04 -0.56 6.28 -27.69 -0.17 -0.73 16 25 H 0.06 1.09 6.91 -51.93 -0.36 0.73 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.09 1.69 6.91 -51.93 -0.36 1.33 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 1.48 7.08 -51.93 -0.37 1.12 16 32 H 0.04 1.00 6.49 -51.93 -0.34 0.66 16 33 H 0.05 1.31 5.42 -51.93 -0.28 1.03 16 34 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 35 H 0.15 2.60 8.06 -52.49 -0.42 2.18 16 36 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.76 8.11 -51.93 -0.42 0.34 16 40 H 0.07 0.78 8.11 -51.93 -0.42 0.35 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 344.39 15.07 5.19 5.19 Total: -1.00 -29.52 344.39 -8.35 -37.87 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -6.74 Total: 1.85 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -2.23 Total: -8.42 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.34 Total: -36.84 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: 0.12 Total: -15.50 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.52 -8.35 -37.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345843386.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.646 kcal (2) G-P(sol) polarization free energy of solvation -29.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds