Wall clock time and date at job start Tue Mar 31 2020 06:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47472 * 2 1 4 4 N 1.46501 * 109.46951 * 120.00137 * 2 1 3 5 5 C 1.46506 * 119.99782 * 294.97256 * 4 2 1 6 6 C 1.50700 * 109.46978 * 263.32717 * 5 4 2 7 7 H 1.08000 * 120.00126 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99746 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99972 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 119.99732 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47149 * 60.00569 * 10 8 6 12 12 H 1.48507 * 109.46968 * 180.02562 * 10 8 6 13 13 H 1.48494 * 109.47480 * 300.00337 * 10 8 6 14 14 C 1.34778 * 120.00294 * 114.97334 * 4 2 1 15 15 O 1.21695 * 119.99719 * 3.58466 * 14 4 2 16 16 C 1.46652 * 119.99860 * 183.58550 * 14 4 2 17 17 C 1.36778 * 125.95363 * 173.52918 * 16 14 4 18 18 C 1.39661 * 106.53111 * 179.88814 * 17 16 14 19 19 C 1.35569 * 107.41302 * 0.42973 * 18 17 16 20 20 O 1.33498 * 108.61181 * 359.67866 * 19 18 17 21 21 C 1.50999 * 123.79353 * 179.60427 * 19 18 17 22 22 C 1.53324 * 108.41665 * 343.27759 * 21 19 18 23 23 C 1.53120 * 109.55200 * 50.17050 * 22 21 19 24 24 C 1.50697 * 128.12351 * 180.22651 * 18 17 16 25 25 H 1.09000 * 109.46797 * 300.00355 * 1 2 3 26 26 H 1.09004 * 109.46635 * 59.99910 * 1 2 3 27 27 H 1.08998 * 109.47594 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46797 * 239.99645 * 2 1 3 29 29 H 1.09003 * 109.47030 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.46891 * 300.00074 * 3 2 1 31 31 H 1.08990 * 109.47422 * 59.99899 * 3 2 1 32 32 H 1.09002 * 109.47103 * 23.32813 * 5 4 2 33 33 H 1.09002 * 109.46878 * 143.32584 * 5 4 2 34 34 H 0.96994 * 120.00098 * 179.97438 * 9 8 6 35 35 H 1.07995 * 126.73335 * 0.02562 * 17 16 14 36 36 H 1.08998 * 109.67465 * 103.00794 * 21 19 18 37 37 H 1.08996 * 109.68062 * 223.50885 * 21 19 18 38 38 H 1.09001 * 109.46199 * 170.19418 * 22 21 19 39 39 H 1.09004 * 109.45769 * 290.14719 * 22 21 19 40 40 H 1.08999 * 109.47316 * 49.75699 * 23 22 21 41 41 H 1.09003 * 109.47507 * 169.77948 * 23 22 21 42 42 H 1.09001 * 109.68305 * 44.15355 * 24 18 17 43 43 H 1.08995 * 109.68340 * 283.59646 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7574 -0.1292 2.5240 6 6 2.9546 0.6661 2.9771 7 1 3.8228 0.7457 2.3397 8 6 2.9411 1.2930 4.2051 9 7 1.8837 1.1964 4.9811 10 14 4.4253 2.2781 4.7671 11 1 4.6815 3.3798 3.8048 12 1 4.1608 2.8474 6.1130 13 1 5.6138 1.3901 4.8307 14 6 2.7076 -1.8425 1.0752 15 8 2.9808 -2.2749 -0.0291 16 6 3.1282 -2.5747 2.2742 17 6 3.7189 -3.8082 2.2959 18 6 3.9479 -4.1155 3.6389 19 6 3.4860 -3.0766 4.3773 20 8 2.9945 -2.1512 3.5501 21 6 3.5418 -3.0277 5.8855 22 6 3.7887 -4.4481 6.4073 23 6 4.9783 -5.0662 5.6675 24 6 4.5810 -5.3559 4.2146 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1301 1.4423 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6769 1.9563 0.8899 32 1 0.8847 0.5223 2.4779 33 1 1.5701 -0.9381 3.2301 34 1 1.8744 1.6371 5.8451 35 1 3.9626 -4.4228 1.4420 36 1 4.3547 -2.3741 6.2016 37 1 2.5960 -2.6520 6.2758 38 1 4.0051 -4.4102 7.4750 39 1 2.9002 -5.0565 6.2385 40 1 5.8173 -4.3705 5.6832 41 1 5.2677 -5.9959 6.1575 42 1 5.4675 -5.6177 3.6369 43 1 3.8674 -6.1793 4.1863 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345843386.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:08 Heat of formation + Delta-G solvation = -52.337478 kcal Electronic energy + Delta-G solvation = -24585.051888 eV Core-core repulsion = 21209.626404 eV Total energy + Delta-G solvation = -3375.425484 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.69007 -40.73180 -37.98382 -37.57860 -34.89679 -33.89730 -33.15770 -31.01440 -30.00134 -29.17037 -28.01966 -25.51625 -25.01405 -23.66841 -22.81686 -21.91506 -20.52301 -19.68792 -18.71589 -18.12039 -17.60115 -17.27557 -16.75896 -16.31171 -15.90892 -15.38917 -15.11646 -14.80247 -14.72383 -14.40684 -14.30844 -14.01526 -13.94078 -13.70717 -13.48279 -13.30169 -13.19746 -13.02106 -12.93397 -12.78084 -12.55551 -12.33775 -12.10882 -11.75045 -11.67942 -11.67344 -11.57690 -11.38585 -11.18981 -10.58959 -10.50520 -9.62810 -9.15152 -8.15727 -6.25363 0.17485 1.36897 1.37516 1.40578 1.45469 1.81240 2.21865 2.28585 2.44537 3.15112 3.53572 3.79061 3.91077 3.97285 4.01368 4.20879 4.22046 4.23386 4.37324 4.49228 4.51750 4.62030 4.63741 4.77570 4.78186 4.86694 4.93054 4.94328 4.99179 5.05113 5.07539 5.15261 5.21787 5.24843 5.28736 5.39997 5.43984 5.46400 5.64914 5.72616 5.79937 6.10398 6.19821 6.43596 6.81191 7.12634 7.41711 8.90929 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012499 B = 0.007389 C = 0.005200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.637815 B = 3788.429054 C = 5383.294587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.124 3.876 3 C -0.141 4.141 4 N -0.584 5.584 5 C 0.255 3.745 6 C -0.522 4.522 7 H 0.039 0.961 8 C 0.032 3.968 9 N -0.913 5.913 10 Si 0.941 3.059 11 H -0.274 1.274 12 H -0.276 1.276 13 H -0.280 1.280 14 C 0.590 3.410 15 O -0.580 6.580 16 C -0.102 4.102 17 C -0.128 4.128 18 C -0.201 4.201 19 C -0.006 4.006 20 O -0.130 6.130 21 C -0.043 4.043 22 C -0.106 4.106 23 C -0.118 4.118 24 C -0.044 4.044 25 H 0.051 0.949 26 H 0.096 0.904 27 H 0.049 0.951 28 H 0.087 0.913 29 H 0.036 0.964 30 H 0.090 0.910 31 H 0.052 0.948 32 H 0.029 0.971 33 H 0.032 0.968 34 H 0.266 0.734 35 H 0.163 0.837 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.100 0.900 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.100 0.900 42 H 0.083 0.917 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.842 -9.684 1.546 9.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.022 3.978 3 C -0.199 4.199 4 N -0.313 5.313 5 C 0.135 3.865 6 C -0.560 4.560 7 H 0.057 0.943 8 C -0.169 4.169 9 N -0.553 5.553 10 Si 0.767 3.233 11 H -0.199 1.199 12 H -0.201 1.201 13 H -0.205 1.205 14 C 0.379 3.621 15 O -0.465 6.465 16 C -0.154 4.154 17 C -0.149 4.149 18 C -0.202 4.202 19 C -0.060 4.060 20 O -0.023 6.023 21 C -0.080 4.080 22 C -0.143 4.143 23 C -0.155 4.155 24 C -0.081 4.081 25 H 0.070 0.930 26 H 0.115 0.885 27 H 0.068 0.932 28 H 0.105 0.895 29 H 0.056 0.944 30 H 0.109 0.891 31 H 0.072 0.928 32 H 0.047 0.953 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.181 0.819 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.119 0.881 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.118 0.882 42 H 0.101 0.899 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.723 -9.488 1.242 9.723 hybrid contribution 0.668 0.965 0.171 1.186 sum 2.390 -8.523 1.412 8.964 Atomic orbital electron populations 1.22065 0.93340 1.01970 1.03273 1.21243 0.95428 0.93758 0.87391 1.21960 1.00351 0.94896 1.02708 1.48353 1.51691 1.21345 1.09878 1.19195 0.96226 0.93638 0.77481 1.21324 1.01014 1.31398 1.02295 0.94318 1.25399 0.98107 0.97136 0.96226 1.69989 1.29710 1.44490 1.11087 0.85877 0.80378 0.79195 0.77831 1.19896 1.20109 1.20540 1.16930 0.78082 0.80986 0.86060 1.90696 1.59942 1.70209 1.25662 1.22098 1.12203 0.97778 0.83334 1.21701 1.00092 0.94564 0.98529 1.20496 1.07993 1.00168 0.91539 1.23656 0.98492 0.88611 0.95252 1.84563 1.61534 1.41111 1.15117 1.20464 1.03408 1.00861 0.83282 1.21603 0.99560 0.92158 1.00991 1.21657 0.97591 1.02186 0.94113 1.20189 0.99944 0.91886 0.96068 0.92955 0.88549 0.93156 0.89456 0.94434 0.89140 0.92848 0.95343 0.95036 0.92520 0.81903 0.89781 0.90266 0.88112 0.90880 0.92272 0.88153 0.89870 0.89453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.76 9.26 71.98 0.67 -4.09 16 2 C 0.12 4.77 3.23 44.99 0.15 4.91 16 3 C -0.14 -5.13 8.65 71.98 0.62 -4.51 16 4 N -0.58 -26.93 2.37 -806.83 -1.92 -28.85 16 5 C 0.25 12.95 3.91 85.63 0.33 13.29 16 6 C -0.52 -28.31 7.49 25.60 0.19 -28.12 16 7 H 0.04 2.20 7.81 -2.91 -0.02 2.18 16 8 C 0.03 1.70 5.46 84.66 0.46 2.16 16 9 N -0.91 -50.62 13.29 21.45 0.28 -50.34 16 10 Si 0.94 43.13 29.54 68.60 2.03 45.16 16 11 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 12 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 13 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 14 C 0.59 28.21 7.58 86.44 0.66 28.87 16 15 O -0.58 -28.48 16.21 -4.33 -0.07 -28.55 16 16 C -0.10 -4.66 6.74 24.13 0.16 -4.50 16 17 C -0.13 -4.94 10.61 22.27 0.24 -4.70 16 18 C -0.20 -6.75 5.93 -20.14 -0.12 -6.87 16 19 C -0.01 -0.23 7.22 25.16 0.18 -0.05 16 20 O -0.13 -6.10 6.57 -3.03 -0.02 -6.12 16 21 C -0.04 -1.30 6.30 30.05 0.19 -1.11 16 22 C -0.11 -2.15 5.89 30.74 0.18 -1.96 16 23 C -0.12 -2.22 5.91 30.76 0.18 -2.04 16 24 C -0.04 -1.00 6.28 29.98 0.19 -0.81 16 25 H 0.05 1.79 6.91 -2.39 -0.02 1.77 16 26 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.09 3.38 6.91 -2.39 -0.02 3.36 16 29 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 31 H 0.05 2.16 7.08 -2.39 -0.02 2.14 16 32 H 0.03 1.50 6.49 -2.39 -0.02 1.48 16 33 H 0.03 1.76 5.42 -2.39 -0.01 1.74 16 34 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 35 H 0.16 5.64 8.06 -2.91 -0.02 5.61 16 36 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 38 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.07 1.43 8.11 -2.38 -0.02 1.41 16 40 H 0.06 1.21 8.11 -2.39 -0.02 1.19 16 41 H 0.10 1.27 8.14 -2.39 -0.02 1.26 16 42 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -65.88 344.39 5.58 -60.30 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 0.99 Total: 17.93 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: 4.28 Total: -9.53 kcal Atomic # 7 Polarization: -77.55 SS G_CDS: -1.63 Total: -79.19 kcal Atomic # 8 Polarization: -34.58 SS G_CDS: -0.09 Total: -34.67 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -65.88 5.58 -60.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345843386.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.964 kcal (2) G-P(sol) polarization free energy of solvation -65.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds