Wall clock time and date at job start Tue Mar 31 2020 06:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47396 * 2 1 4 4 H 1.09007 * 109.46789 * 54.99598 * 3 2 1 5 5 N 1.46506 * 109.46790 * 295.00096 * 3 2 1 6 6 C 1.34775 * 119.99715 * 85.00091 * 5 3 2 7 7 O 1.21274 * 120.00469 * 359.97438 * 6 5 3 8 8 C 1.50701 * 119.99299 * 179.97438 * 6 5 3 9 9 H 1.08997 * 109.47303 * 59.99954 * 8 6 5 10 10 C 1.50697 * 109.47560 * 299.99637 * 8 6 5 11 11 H 1.08006 * 119.99769 * 324.88684 * 10 8 6 12 12 C 1.37872 * 120.00376 * 144.87994 * 10 8 6 13 13 N 1.31520 * 119.99943 * 5.20040 * 12 10 8 14 14 Si 1.86802 * 120.00120 * 185.19825 * 12 10 8 15 15 H 1.48504 * 109.47245 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47324 * 120.00194 * 14 12 10 17 17 H 1.48507 * 109.46848 * 240.00207 * 14 12 10 18 18 C 1.50709 * 109.47040 * 179.97438 * 8 6 5 19 19 C 1.38235 * 119.99871 * 66.00913 * 18 8 6 20 20 C 1.38239 * 119.99619 * 179.81246 * 19 18 8 21 21 C 1.38234 * 120.00013 * 0.39718 * 20 19 18 22 22 C 1.38242 * 120.00095 * 359.85898 * 21 20 19 23 23 C 1.38232 * 119.99705 * 246.28876 * 18 8 6 24 24 C 1.52996 * 109.47079 * 174.99828 * 3 2 1 25 25 H 1.09002 * 109.46579 * 174.99916 * 24 3 2 26 26 C 1.52994 * 109.47231 * 294.99563 * 24 3 2 27 27 O 1.42901 * 109.47243 * 55.00269 * 24 3 2 28 28 H 1.08997 * 109.46688 * 60.00324 * 1 2 3 29 29 H 1.08997 * 109.47192 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46987 * 300.00275 * 1 2 3 31 31 H 1.08997 * 109.46987 * 239.99725 * 2 1 3 32 32 H 1.09003 * 109.47227 * 120.00097 * 2 1 3 33 33 H 0.96999 * 119.99382 * 264.99682 * 5 3 2 34 34 H 0.97004 * 119.99976 * 179.97438 * 13 12 10 35 35 H 1.07999 * 119.99718 * 0.02562 * 19 18 8 36 36 H 1.07994 * 119.99826 * 180.23094 * 20 19 18 37 37 H 1.08003 * 120.00177 * 179.83223 * 21 20 19 38 38 H 1.07997 * 119.99766 * 179.97438 * 22 21 20 39 39 H 1.08004 * 120.00557 * 359.97438 * 23 18 8 40 40 H 1.09004 * 109.47087 * 179.97438 * 26 24 3 41 41 H 1.08999 * 109.47554 * 300.00768 * 26 24 3 42 42 H 1.09002 * 109.47050 * 60.00642 * 26 24 3 43 43 H 0.96696 * 113.99694 * 299.99888 * 27 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6525 2.0974 -1.2519 6 6 0.4353 2.6644 -1.3669 7 8 -0.3394 2.6320 -0.4344 8 6 0.0369 3.3386 -2.6545 9 1 0.0682 2.6145 -3.4686 10 6 0.9927 4.4660 -2.9480 11 1 1.4063 5.0480 -2.1376 12 6 1.3394 4.7545 -4.2508 13 7 0.7591 4.1149 -5.2427 14 14 2.6331 6.0540 -4.6073 15 1 3.1289 6.6229 -3.3282 16 1 3.7637 5.4373 -5.3465 17 1 2.0346 7.1356 -5.4304 18 6 -1.3612 3.8860 -2.5233 19 6 -1.6202 4.9147 -1.6370 20 6 -2.9018 5.4193 -1.5194 21 6 -3.9259 4.8898 -2.2822 22 6 -3.6677 3.8575 -3.1647 23 6 -2.3854 3.3554 -3.2850 24 6 3.5649 1.4442 0.1258 25 1 3.9356 2.4654 0.0366 26 6 3.9650 0.8736 1.4878 27 8 4.1294 0.6403 -0.9121 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 2.2721 2.1231 -1.9978 34 1 1.0027 4.3181 -6.1594 35 1 -0.8207 5.3263 -1.0389 36 1 -3.1035 6.2255 -0.8297 37 1 -4.9277 5.2822 -2.1885 38 1 -4.4679 3.4435 -3.7603 39 1 -2.1838 2.5489 -3.9745 40 1 5.0513 0.8744 1.5771 41 1 3.5344 1.4867 2.2794 42 1 3.5943 -0.1476 1.5769 43 1 3.8427 -0.2830 -0.8943 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001449422832.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:58 Heat of formation + Delta-G solvation = -82.133567 kcal Electronic energy + Delta-G solvation = -24169.300721 eV Core-core repulsion = 20792.583181 eV Total energy + Delta-G solvation = -3376.717539 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.62748 -38.33959 -37.25169 -34.28791 -33.61608 -31.74572 -30.97577 -30.68322 -29.90562 -27.53284 -25.76778 -23.77124 -22.89795 -21.57715 -21.02695 -19.98345 -19.18671 -16.98735 -16.75355 -15.87533 -15.85739 -15.49737 -15.34155 -14.63159 -14.42808 -14.06444 -13.91790 -13.73599 -13.03170 -12.75636 -12.58476 -12.44489 -12.28981 -12.10528 -11.94362 -11.79934 -11.62787 -11.45723 -11.18640 -11.02909 -10.94032 -10.59420 -10.50616 -10.35346 -10.23715 -10.04089 -9.90529 -9.37939 -8.74035 -8.55855 -8.23047 -7.91290 -7.56831 -6.24786 -4.30859 2.40961 2.43833 3.20700 3.29515 3.32679 3.74751 3.97162 4.30861 4.46873 4.81115 4.85766 4.97637 5.11622 5.15734 5.30819 5.39391 5.53790 5.73279 5.74546 5.81741 5.86500 5.89235 5.92013 6.00234 6.18506 6.23537 6.28671 6.34750 6.48228 6.53901 6.63635 6.77204 6.89361 7.00860 7.19328 7.30148 7.39883 7.48177 7.65342 7.65855 7.79454 7.98924 8.10754 8.47044 8.73478 9.29674 9.36226 10.83523 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011909 B = 0.006647 C = 0.004797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.615976 B = 4211.246441 C = 5835.831730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.139 4.139 3 C 0.114 3.886 4 H 0.088 0.912 5 N -0.720 5.720 6 C 0.528 3.472 7 O -0.564 6.564 8 C 0.050 3.950 9 H 0.087 0.913 10 C -0.513 4.513 11 H 0.062 0.938 12 C 0.073 3.927 13 N -0.877 5.877 14 Si 0.897 3.103 15 H -0.271 1.271 16 H -0.281 1.281 17 H -0.283 1.283 18 C -0.007 4.007 19 C -0.085 4.085 20 C -0.135 4.135 21 C -0.150 4.150 22 C -0.132 4.132 23 C -0.118 4.118 24 C 0.094 3.906 25 H 0.105 0.895 26 C -0.183 4.183 27 O -0.558 6.558 28 H 0.064 0.936 29 H 0.038 0.962 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.408 0.592 34 H 0.266 0.734 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.111 0.889 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.007 -6.483 7.966 10.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.177 4.177 3 C 0.008 3.992 4 H 0.106 0.894 5 N -0.373 5.373 6 C 0.318 3.682 7 O -0.443 6.443 8 C 0.029 3.971 9 H 0.105 0.895 10 C -0.550 4.550 11 H 0.080 0.920 12 C -0.132 4.132 13 N -0.513 5.513 14 Si 0.724 3.276 15 H -0.195 1.195 16 H -0.207 1.207 17 H -0.209 1.209 18 C -0.008 4.008 19 C -0.103 4.103 20 C -0.153 4.153 21 C -0.168 4.168 22 C -0.150 4.150 23 C -0.136 4.136 24 C 0.035 3.965 25 H 0.123 0.877 26 C -0.241 4.241 27 O -0.364 6.364 28 H 0.083 0.917 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.244 0.756 34 H 0.075 0.925 35 H 0.128 0.872 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.129 0.871 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 1.738 -5.952 8.263 10.331 hybrid contribution 0.632 0.321 -0.535 0.888 sum 2.370 -5.631 7.728 9.851 Atomic orbital electron populations 1.21753 0.94439 0.99894 1.03753 1.22009 0.97887 0.96597 1.01215 1.21544 0.94115 0.93579 0.89974 0.89385 1.45905 1.17837 1.58014 1.15509 1.21565 0.80144 0.75637 0.90836 1.90578 1.51747 1.60095 1.41899 1.18116 0.90315 0.97287 0.91397 0.89550 1.20707 1.25812 1.15913 0.92615 0.91970 1.24972 0.95922 0.96093 0.96168 1.69930 1.40808 1.41220 0.99331 0.86446 0.81233 0.81317 0.78575 1.19534 1.20660 1.20881 1.20022 0.94891 0.93651 0.92208 1.20807 0.95480 0.96156 0.97879 1.20940 0.93717 1.00365 1.00256 1.20783 0.98104 0.98817 0.99091 1.20893 0.96585 0.98041 0.99490 1.20976 0.92392 1.00376 0.99904 1.22224 0.91569 0.95933 0.86802 0.87713 1.22503 1.02206 1.01825 0.97555 1.86613 1.72093 1.24708 1.52980 0.91655 0.94272 0.92371 0.91968 0.91769 0.75598 0.92454 0.87212 0.87699 0.87802 0.87649 0.87126 0.91725 0.91403 0.91950 0.78116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 8.52 37.16 0.32 -1.86 16 2 C -0.14 -1.78 4.89 -26.73 -0.13 -1.91 16 3 C 0.11 1.66 2.13 -67.93 -0.14 1.51 16 4 H 0.09 1.42 7.58 -51.92 -0.39 1.02 16 5 N -0.72 -12.99 4.91 -53.80 -0.26 -13.26 16 6 C 0.53 11.32 5.61 -10.99 -0.06 11.26 16 7 O -0.56 -12.87 12.55 5.56 0.07 -12.80 16 8 C 0.05 1.18 2.38 -94.07 -0.22 0.96 16 9 H 0.09 2.18 7.13 -51.93 -0.37 1.81 16 10 C -0.51 -12.87 7.47 -34.44 -0.26 -13.12 16 11 H 0.06 1.59 7.82 -52.48 -0.41 1.18 16 12 C 0.07 1.88 5.45 -17.82 -0.10 1.78 16 13 N -0.88 -23.37 12.84 55.43 0.71 -22.66 16 14 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 15 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 C -0.01 -0.16 4.30 -104.62 -0.45 -0.61 16 19 C -0.09 -1.92 8.31 -39.58 -0.33 -2.25 16 20 C -0.13 -2.69 10.05 -39.58 -0.40 -3.08 16 21 C -0.15 -2.82 10.05 -39.58 -0.40 -3.22 16 22 C -0.13 -2.58 10.05 -39.58 -0.40 -2.98 16 23 C -0.12 -2.61 9.67 -39.58 -0.38 -2.99 16 24 C 0.09 1.16 3.48 -26.74 -0.09 1.07 16 25 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 26 C -0.18 -1.74 9.30 37.15 0.35 -1.40 16 27 O -0.56 -7.08 12.98 -35.23 -0.46 -7.53 16 28 H 0.06 1.21 5.64 -51.93 -0.29 0.92 16 29 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.96 7.85 -51.93 -0.41 0.55 16 31 H 0.06 0.75 7.00 -51.93 -0.36 0.39 16 32 H 0.06 0.67 6.34 -51.93 -0.33 0.34 16 33 H 0.41 7.52 8.27 -40.82 -0.34 7.18 16 34 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 35 H 0.11 2.51 7.89 -52.49 -0.41 2.10 16 36 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 37 H 0.10 1.63 8.06 -52.48 -0.42 1.21 16 38 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 39 H 0.11 2.37 7.96 -52.48 -0.42 1.95 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.52 6.46 -51.93 -0.34 0.19 16 43 H 0.37 3.56 7.31 45.56 0.33 3.89 16 LS Contribution 348.09 15.07 5.25 5.25 Total: -1.00 -28.70 348.09 -8.25 -36.95 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: -5.83 Total: 15.73 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: -2.70 Total: -16.85 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: 0.45 Total: -35.91 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.39 Total: -20.33 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.70 -8.25 -36.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001449422832.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.186 kcal (2) G-P(sol) polarization free energy of solvation -28.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds