Wall clock time and date at job start Tue Mar 31 2020 06:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47396 * 2 1 4 4 H 1.09007 * 109.46789 * 54.99598 * 3 2 1 5 5 N 1.46506 * 109.46790 * 295.00096 * 3 2 1 6 6 C 1.34775 * 119.99715 * 85.00091 * 5 3 2 7 7 O 1.21274 * 120.00469 * 359.97438 * 6 5 3 8 8 C 1.50701 * 119.99299 * 179.97438 * 6 5 3 9 9 H 1.08997 * 109.47303 * 59.99954 * 8 6 5 10 10 C 1.50697 * 109.47560 * 299.99637 * 8 6 5 11 11 H 1.08006 * 119.99769 * 324.88684 * 10 8 6 12 12 C 1.37872 * 120.00376 * 144.87994 * 10 8 6 13 13 N 1.31520 * 119.99943 * 5.20040 * 12 10 8 14 14 Si 1.86802 * 120.00120 * 185.19825 * 12 10 8 15 15 H 1.48504 * 109.47245 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47324 * 120.00194 * 14 12 10 17 17 H 1.48507 * 109.46848 * 240.00207 * 14 12 10 18 18 C 1.50709 * 109.47040 * 179.97438 * 8 6 5 19 19 C 1.38235 * 119.99871 * 66.00913 * 18 8 6 20 20 C 1.38239 * 119.99619 * 179.81246 * 19 18 8 21 21 C 1.38234 * 120.00013 * 0.39718 * 20 19 18 22 22 C 1.38242 * 120.00095 * 359.85898 * 21 20 19 23 23 C 1.38232 * 119.99705 * 246.28876 * 18 8 6 24 24 C 1.52996 * 109.47079 * 174.99828 * 3 2 1 25 25 H 1.09002 * 109.46579 * 174.99916 * 24 3 2 26 26 C 1.52994 * 109.47231 * 294.99563 * 24 3 2 27 27 O 1.42901 * 109.47243 * 55.00269 * 24 3 2 28 28 H 1.08997 * 109.46688 * 60.00324 * 1 2 3 29 29 H 1.08997 * 109.47192 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46987 * 300.00275 * 1 2 3 31 31 H 1.08997 * 109.46987 * 239.99725 * 2 1 3 32 32 H 1.09003 * 109.47227 * 120.00097 * 2 1 3 33 33 H 0.96999 * 119.99382 * 264.99682 * 5 3 2 34 34 H 0.97004 * 119.99976 * 179.97438 * 13 12 10 35 35 H 1.07999 * 119.99718 * 0.02562 * 19 18 8 36 36 H 1.07994 * 119.99826 * 180.23094 * 20 19 18 37 37 H 1.08003 * 120.00177 * 179.83223 * 21 20 19 38 38 H 1.07997 * 119.99766 * 179.97438 * 22 21 20 39 39 H 1.08004 * 120.00557 * 359.97438 * 23 18 8 40 40 H 1.09004 * 109.47087 * 179.97438 * 26 24 3 41 41 H 1.08999 * 109.47554 * 300.00768 * 26 24 3 42 42 H 1.09002 * 109.47050 * 60.00642 * 26 24 3 43 43 H 0.96696 * 113.99694 * 299.99888 * 27 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6525 2.0974 -1.2519 6 6 0.4353 2.6644 -1.3669 7 8 -0.3394 2.6320 -0.4344 8 6 0.0369 3.3386 -2.6545 9 1 0.0682 2.6145 -3.4686 10 6 0.9927 4.4660 -2.9480 11 1 1.4063 5.0480 -2.1376 12 6 1.3394 4.7545 -4.2508 13 7 0.7591 4.1149 -5.2427 14 14 2.6331 6.0540 -4.6073 15 1 3.1289 6.6229 -3.3282 16 1 3.7637 5.4373 -5.3465 17 1 2.0346 7.1356 -5.4304 18 6 -1.3612 3.8860 -2.5233 19 6 -1.6202 4.9147 -1.6370 20 6 -2.9018 5.4193 -1.5194 21 6 -3.9259 4.8898 -2.2822 22 6 -3.6677 3.8575 -3.1647 23 6 -2.3854 3.3554 -3.2850 24 6 3.5649 1.4442 0.1258 25 1 3.9356 2.4654 0.0366 26 6 3.9650 0.8736 1.4878 27 8 4.1294 0.6403 -0.9121 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 2.2721 2.1231 -1.9978 34 1 1.0027 4.3181 -6.1594 35 1 -0.8207 5.3263 -1.0389 36 1 -3.1035 6.2255 -0.8297 37 1 -4.9277 5.2822 -2.1885 38 1 -4.4679 3.4435 -3.7603 39 1 -2.1838 2.5489 -3.9745 40 1 5.0513 0.8744 1.5771 41 1 3.5344 1.4867 2.2794 42 1 3.5943 -0.1476 1.5769 43 1 3.8427 -0.2830 -0.8943 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001449422832.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:57 Heat of formation + Delta-G solvation = -100.555571 kcal Electronic energy + Delta-G solvation = -24170.099559 eV Core-core repulsion = 20792.583181 eV Total energy + Delta-G solvation = -3377.516377 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.13315 -39.78351 -38.65421 -35.59900 -35.44989 -33.24390 -32.66867 -31.65177 -31.53090 -29.20799 -27.08913 -25.58003 -23.97487 -23.21320 -22.54530 -21.22130 -20.83541 -18.68861 -18.18096 -17.58304 -17.32804 -16.73731 -16.57921 -16.25487 -15.92941 -15.52244 -15.50498 -14.95922 -14.60862 -14.35796 -14.02973 -13.85959 -13.64653 -13.44910 -13.26596 -13.12844 -12.95953 -12.89857 -12.80838 -12.68996 -12.31151 -12.15672 -11.93821 -11.72353 -11.66918 -11.56713 -11.24904 -11.03686 -10.67956 -10.30993 -9.71471 -9.55123 -9.24248 -8.21336 -6.32561 0.76017 0.81473 1.39963 1.43147 1.53146 2.03715 2.42846 2.56709 3.08178 3.27432 3.50136 3.73376 3.90902 4.19114 4.21901 4.25550 4.30070 4.31866 4.42365 4.51978 4.56228 4.61060 4.79546 4.83122 4.88084 4.92843 4.98442 5.01558 5.11504 5.15640 5.27066 5.33527 5.37921 5.45547 5.48820 5.64623 5.78518 5.80320 5.86358 5.96736 6.24909 6.41180 6.72945 6.82264 6.87064 7.34693 7.65000 8.86795 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011909 B = 0.006647 C = 0.004797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.615976 B = 4211.246441 C = 5835.831730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.131 4.131 3 C 0.111 3.889 4 H 0.072 0.928 5 N -0.713 5.713 6 C 0.529 3.471 7 O -0.581 6.581 8 C 0.051 3.949 9 H 0.060 0.940 10 C -0.513 4.513 11 H 0.051 0.949 12 C 0.032 3.968 13 N -0.905 5.905 14 Si 0.954 3.046 15 H -0.269 1.269 16 H -0.274 1.274 17 H -0.285 1.285 18 C -0.034 4.034 19 C -0.110 4.110 20 C -0.134 4.134 21 C -0.144 4.144 22 C -0.129 4.129 23 C -0.143 4.143 24 C 0.102 3.898 25 H 0.089 0.911 26 C -0.175 4.175 27 O -0.571 6.571 28 H 0.026 0.974 29 H 0.059 0.941 30 H 0.042 0.958 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.406 0.594 34 H 0.266 0.734 35 H 0.094 0.906 36 H 0.135 0.865 37 H 0.147 0.853 38 H 0.139 0.861 39 H 0.103 0.897 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.943 -6.812 8.960 11.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.169 4.169 3 C 0.006 3.994 4 H 0.090 0.910 5 N -0.364 5.364 6 C 0.318 3.682 7 O -0.462 6.462 8 C 0.030 3.970 9 H 0.078 0.922 10 C -0.551 4.551 11 H 0.069 0.931 12 C -0.170 4.170 13 N -0.543 5.543 14 Si 0.779 3.221 15 H -0.193 1.193 16 H -0.199 1.199 17 H -0.211 1.211 18 C -0.035 4.035 19 C -0.129 4.129 20 C -0.152 4.152 21 C -0.162 4.162 22 C -0.147 4.147 23 C -0.161 4.161 24 C 0.042 3.958 25 H 0.107 0.893 26 C -0.233 4.233 27 O -0.379 6.379 28 H 0.046 0.954 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.118 0.882 33 H 0.241 0.759 34 H 0.075 0.925 35 H 0.112 0.888 36 H 0.153 0.847 37 H 0.164 0.836 38 H 0.156 0.844 39 H 0.122 0.878 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.098 0.902 43 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 1.698 -6.307 9.274 11.344 hybrid contribution 0.577 0.389 -0.816 1.072 sum 2.276 -5.918 8.459 10.571 Atomic orbital electron populations 1.21684 0.96423 1.00370 1.01074 1.21981 0.95910 0.95527 1.03486 1.21801 0.95966 0.94188 0.87432 0.90983 1.45870 1.16464 1.57273 1.16757 1.21159 0.81115 0.75985 0.89901 1.90549 1.52520 1.61040 1.42120 1.18001 0.90928 0.96428 0.91667 0.92216 1.20771 1.25924 1.16062 0.92371 0.93063 1.25610 0.97570 0.97825 0.96004 1.70033 1.42101 1.42604 0.99514 0.85566 0.79210 0.79025 0.78257 1.19297 1.19885 1.21121 1.20109 0.95105 0.94701 0.93539 1.20829 0.96676 0.96905 0.98469 1.21314 0.92736 1.00662 1.00525 1.21259 0.99680 0.97751 0.97520 1.21291 0.96166 0.97771 0.99499 1.21111 0.93678 1.01044 1.00286 1.22104 0.89388 0.95727 0.88543 0.89271 1.22436 1.02866 1.02614 0.95339 1.86592 1.72076 1.25889 1.53324 0.95444 0.92163 0.93898 0.90822 0.88180 0.75907 0.92466 0.88763 0.84705 0.83574 0.84364 0.87842 0.90811 0.91036 0.90159 0.76440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.24 8.52 71.98 0.61 -3.62 16 2 C -0.13 -3.15 4.89 30.60 0.15 -3.00 16 3 C 0.11 3.20 2.13 44.99 0.10 3.30 16 4 H 0.07 2.34 7.58 -2.38 -0.02 2.32 16 5 N -0.71 -26.62 4.91 -442.53 -2.17 -28.79 16 6 C 0.53 23.84 5.61 87.66 0.49 24.33 16 7 O -0.58 -27.74 12.55 -3.01 -0.04 -27.77 16 8 C 0.05 2.54 2.38 -13.03 -0.03 2.51 16 9 H 0.06 3.24 7.13 -2.39 -0.02 3.22 16 10 C -0.51 -26.82 7.47 25.60 0.19 -26.63 16 11 H 0.05 2.73 7.82 -2.91 -0.02 2.70 16 12 C 0.03 1.66 5.45 84.65 0.46 2.12 16 13 N -0.91 -49.74 12.84 21.45 0.28 -49.46 16 14 Si 0.95 42.09 29.54 68.60 2.03 44.12 16 15 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 16 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 17 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 18 C -0.03 -1.64 4.30 -19.86 -0.09 -1.72 16 19 C -0.11 -5.11 8.31 22.27 0.18 -4.93 16 20 C -0.13 -5.19 10.05 22.27 0.22 -4.96 16 21 C -0.14 -5.06 10.05 22.27 0.22 -4.83 16 22 C -0.13 -4.88 10.05 22.27 0.22 -4.66 16 23 C -0.14 -6.47 9.67 22.27 0.22 -6.25 16 24 C 0.10 2.39 3.48 30.59 0.11 2.50 16 25 H 0.09 2.37 8.14 -2.39 -0.02 2.36 16 26 C -0.17 -2.88 9.30 71.98 0.67 -2.21 16 27 O -0.57 -13.57 12.98 -148.98 -1.93 -15.51 16 28 H 0.03 1.03 5.64 -2.39 -0.01 1.02 16 29 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.04 1.42 7.85 -2.39 -0.02 1.40 16 31 H 0.07 1.63 7.00 -2.39 -0.02 1.62 16 32 H 0.10 1.74 6.34 -2.39 -0.02 1.73 16 33 H 0.41 15.51 8.27 -92.71 -0.77 14.74 16 34 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 35 H 0.09 4.51 7.89 -2.91 -0.02 4.49 16 36 H 0.14 4.29 8.06 -2.91 -0.02 4.26 16 37 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 38 H 0.14 4.22 8.06 -2.91 -0.02 4.19 16 39 H 0.10 4.66 7.96 -2.91 -0.02 4.64 16 40 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.08 1.04 6.46 -2.39 -0.02 1.02 16 43 H 0.39 6.46 7.31 -74.06 -0.54 5.92 16 Total: -1.00 -64.48 348.09 1.60 -62.88 By element: Atomic # 1 Polarization: 42.87 SS G_CDS: -0.29 Total: 42.58 kcal Atomic # 6 Polarization: -31.78 SS G_CDS: 3.73 Total: -28.05 kcal Atomic # 7 Polarization: -76.35 SS G_CDS: -1.90 Total: -78.25 kcal Atomic # 8 Polarization: -41.31 SS G_CDS: -1.97 Total: -43.28 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -64.48 1.60 -62.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001449422832.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.676 kcal (2) G-P(sol) polarization free energy of solvation -64.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds