Wall clock time and date at job start Tue Mar 31 2020 06:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47506 * 2 1 4 4 H 1.08998 * 109.46653 * 54.99484 * 3 2 1 5 5 N 1.46500 * 109.46857 * 295.00033 * 3 2 1 6 6 C 1.34781 * 120.00421 * 84.99801 * 5 3 2 7 7 O 1.21287 * 119.99412 * 359.97438 * 6 5 3 8 8 C 1.50697 * 120.00127 * 180.02562 * 6 5 3 9 9 H 1.08992 * 109.47071 * 299.99358 * 8 6 5 10 10 C 1.50701 * 109.47239 * 59.99890 * 8 6 5 11 11 H 1.08005 * 119.99963 * 33.32611 * 10 8 6 12 12 C 1.37876 * 119.99975 * 213.32673 * 10 8 6 13 13 N 1.31518 * 119.99838 * 6.35246 * 12 10 8 14 14 Si 1.86793 * 120.00042 * 186.35087 * 12 10 8 15 15 H 1.48504 * 109.46985 * 90.00426 * 14 12 10 16 16 H 1.48504 * 109.47176 * 210.00059 * 14 12 10 17 17 H 1.48497 * 109.47328 * 330.00384 * 14 12 10 18 18 C 1.50700 * 109.46837 * 179.97438 * 8 6 5 19 19 C 1.38243 * 119.99811 * 293.80226 * 18 8 6 20 20 C 1.38235 * 119.99760 * 179.79235 * 19 18 8 21 21 C 1.38238 * 119.99962 * 0.43465 * 20 19 18 22 22 C 1.38239 * 120.00066 * 359.82010 * 21 20 19 23 23 C 1.38226 * 120.00007 * 359.97258 * 22 21 20 24 24 C 1.52992 * 109.47618 * 174.99709 * 3 2 1 25 25 H 1.09003 * 109.47475 * 300.00228 * 24 3 2 26 26 C 1.52995 * 109.47490 * 180.02562 * 24 3 2 27 27 O 1.42906 * 109.47172 * 60.00063 * 24 3 2 28 28 H 1.08994 * 109.47339 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47321 * 300.00444 * 1 2 3 30 30 H 1.09001 * 109.47036 * 60.00220 * 1 2 3 31 31 H 1.08997 * 109.47699 * 239.99939 * 2 1 3 32 32 H 1.09001 * 109.47036 * 119.99780 * 2 1 3 33 33 H 0.96998 * 120.00206 * 264.99718 * 5 3 2 34 34 H 0.96998 * 120.00176 * 179.97438 * 13 12 10 35 35 H 1.07993 * 119.99873 * 359.97438 * 19 18 8 36 36 H 1.08002 * 120.00116 * 180.27315 * 20 19 18 37 37 H 1.08004 * 119.99905 * 179.83571 * 21 20 19 38 38 H 1.08000 * 119.99986 * 179.97438 * 22 21 20 39 39 H 1.08002 * 120.00672 * 180.02562 * 23 22 21 40 40 H 1.08999 * 109.47248 * 59.99943 * 26 24 3 41 41 H 1.08997 * 109.47800 * 180.02562 * 26 24 3 42 42 H 1.09005 * 109.47405 * 300.00347 * 26 24 3 43 43 H 0.96696 * 113.99887 * 59.99486 * 27 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6525 2.0975 -1.2518 6 6 0.4352 2.6644 -1.3671 7 8 -0.3396 2.6320 -0.4345 8 6 0.0364 3.3376 -2.6550 9 1 0.7277 4.1529 -2.8680 10 6 0.0793 2.3356 -3.7798 11 1 -0.1696 1.3016 -3.5917 12 6 0.4362 2.7389 -5.0490 13 7 0.8593 3.9672 -5.2541 14 14 0.3190 1.5408 -6.4773 15 1 -1.0283 1.6368 -7.0946 16 1 1.3524 1.8751 -7.4900 17 1 0.5395 0.1580 -5.9828 18 6 -1.3615 3.8851 -2.5236 19 6 -2.4314 3.0215 -2.3802 20 6 -3.7132 3.5239 -2.2554 21 6 -3.9260 4.8895 -2.2831 22 6 -2.8567 5.7529 -2.4318 23 6 -1.5745 5.2507 -2.5522 24 6 3.5648 1.4444 0.1258 25 1 3.8532 0.9570 1.0572 26 6 4.0748 2.8868 0.1264 27 8 4.1347 0.7377 -0.9778 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.2720 2.1231 -1.9978 34 1 1.1107 4.2508 -6.1469 35 1 -2.2655 1.9546 -2.3628 36 1 -4.5486 2.8494 -2.1390 37 1 -4.9278 5.2819 -2.1882 38 1 -3.0231 6.8198 -2.4537 39 1 -0.7390 5.9252 -2.6680 40 1 3.6402 3.4255 0.9684 41 1 5.1611 2.8882 0.2156 42 1 3.7864 3.3746 -0.8048 43 1 3.9191 1.1165 -1.8410 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001449422843.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:00 Heat of formation + Delta-G solvation = -98.731545 kcal Electronic energy + Delta-G solvation = -24397.194853 eV Core-core repulsion = 21019.757572 eV Total energy + Delta-G solvation = -3377.437282 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.17596 -39.76783 -38.54372 -35.60222 -35.44114 -33.22181 -32.66326 -31.69008 -31.53547 -29.12806 -27.33354 -25.72341 -23.23536 -22.95734 -22.89434 -21.46308 -20.98824 -18.74555 -18.19651 -17.76773 -17.31140 -16.69583 -16.25261 -16.00212 -15.88526 -15.52054 -15.38358 -15.17762 -14.71523 -14.23073 -14.03874 -13.96570 -13.78210 -13.42384 -13.30605 -13.21187 -12.89183 -12.82095 -12.76039 -12.53618 -12.34263 -12.13692 -11.95975 -11.89514 -11.64545 -11.60279 -11.24495 -10.94122 -10.68582 -10.30422 -9.72319 -9.55972 -9.25571 -8.21008 -6.30108 0.75328 0.80581 1.41306 1.45480 1.52474 2.04438 2.43989 2.54183 3.08964 3.27404 3.40786 3.71923 4.00621 4.19966 4.22188 4.29829 4.34763 4.37688 4.41036 4.49045 4.53465 4.63086 4.79844 4.88389 4.89187 4.97540 4.99797 5.05932 5.07389 5.14912 5.27805 5.32244 5.38117 5.45986 5.52198 5.66689 5.77851 5.79062 5.84746 5.97057 6.24742 6.40730 6.68972 6.74561 6.83812 7.36601 7.64919 8.87057 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011836 B = 0.006832 C = 0.005353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.173738 B = 4097.133960 C = 5229.582799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 C 0.113 3.887 4 H 0.078 0.922 5 N -0.711 5.711 6 C 0.532 3.468 7 O -0.580 6.580 8 C 0.051 3.949 9 H 0.066 0.934 10 C -0.510 4.510 11 H 0.051 0.949 12 C 0.038 3.962 13 N -0.904 5.904 14 Si 0.947 3.053 15 H -0.286 1.286 16 H -0.280 1.280 17 H -0.266 1.266 18 C -0.038 4.038 19 C -0.108 4.108 20 C -0.136 4.136 21 C -0.144 4.144 22 C -0.129 4.129 23 C -0.144 4.144 24 C 0.107 3.893 25 H 0.126 0.874 26 C -0.182 4.182 27 O -0.568 6.568 28 H 0.051 0.949 29 H 0.044 0.956 30 H 0.032 0.968 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.402 0.598 34 H 0.266 0.734 35 H 0.095 0.905 36 H 0.134 0.866 37 H 0.145 0.855 38 H 0.139 0.861 39 H 0.106 0.894 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.051 0.949 43 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.300 -1.996 7.592 8.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.159 4.159 3 C 0.008 3.992 4 H 0.096 0.904 5 N -0.364 5.364 6 C 0.321 3.679 7 O -0.461 6.461 8 C 0.029 3.971 9 H 0.084 0.916 10 C -0.548 4.548 11 H 0.069 0.931 12 C -0.164 4.164 13 N -0.541 5.541 14 Si 0.773 3.227 15 H -0.212 1.212 16 H -0.205 1.205 17 H -0.191 1.191 18 C -0.039 4.039 19 C -0.126 4.126 20 C -0.154 4.154 21 C -0.162 4.162 22 C -0.147 4.147 23 C -0.163 4.163 24 C 0.047 3.953 25 H 0.144 0.856 26 C -0.240 4.240 27 O -0.375 6.375 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.081 0.919 32 H 0.104 0.896 33 H 0.238 0.762 34 H 0.076 0.924 35 H 0.113 0.887 36 H 0.151 0.849 37 H 0.163 0.837 38 H 0.156 0.844 39 H 0.124 0.876 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.070 0.930 43 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 2.093 -2.271 8.595 9.133 hybrid contribution -0.077 -0.025 -1.862 1.863 sum 2.017 -2.297 6.733 7.394 Atomic orbital electron populations 1.21717 0.96566 1.00020 1.01298 1.21793 0.95262 0.96008 1.02817 1.21782 0.96152 0.93535 0.87725 0.90398 1.45779 1.16706 1.57663 1.16235 1.21134 0.80915 0.76781 0.89027 1.90568 1.52062 1.61419 1.42002 1.18010 0.91474 0.96971 0.90596 0.91576 1.20701 1.47475 0.93916 0.92734 0.93067 1.25495 0.93631 0.96544 1.00697 1.69970 1.43059 1.18267 1.22848 0.85721 0.77552 0.79881 0.79530 1.21202 1.20506 1.19059 1.20167 0.96667 0.93181 0.93892 1.20833 0.93086 0.98737 0.99964 1.21324 0.96465 0.96410 1.01189 1.21260 0.99517 0.93043 1.02344 1.21291 0.92283 1.00449 1.00704 1.21150 0.97705 0.94901 1.02517 1.22233 0.88701 0.93022 0.91310 0.85638 1.22447 1.02392 0.96284 1.02838 1.86535 1.75957 1.57428 1.17558 0.93019 0.93674 0.94842 0.91908 0.89612 0.76188 0.92424 0.88697 0.84854 0.83685 0.84357 0.87550 0.91304 0.90585 0.92983 0.77046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.65 8.51 71.98 0.61 -4.04 16 2 C -0.12 -3.41 5.39 30.59 0.17 -3.24 16 3 C 0.11 3.22 2.09 44.99 0.09 3.32 16 4 H 0.08 2.43 7.58 -2.39 -0.02 2.41 16 5 N -0.71 -24.47 4.20 -442.53 -1.86 -26.33 16 6 C 0.53 22.77 5.61 87.66 0.49 23.26 16 7 O -0.58 -26.82 12.56 -3.05 -0.04 -26.86 16 8 C 0.05 2.40 2.44 -13.03 -0.03 2.37 16 9 H 0.07 3.39 7.02 -2.39 -0.02 3.37 16 10 C -0.51 -25.31 7.45 25.60 0.19 -25.12 16 11 H 0.05 2.60 7.82 -2.91 -0.02 2.58 16 12 C 0.04 1.92 5.45 84.65 0.46 2.38 16 13 N -0.90 -47.37 12.79 21.45 0.27 -47.10 16 14 Si 0.95 40.73 29.54 68.60 2.03 42.76 16 15 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 16 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 17 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 18 C -0.04 -1.79 4.30 -19.86 -0.09 -1.88 16 19 C -0.11 -4.84 8.31 22.27 0.19 -4.66 16 20 C -0.14 -5.12 10.05 22.27 0.22 -4.90 16 21 C -0.14 -4.90 10.05 22.27 0.22 -4.68 16 22 C -0.13 -4.71 10.05 22.27 0.22 -4.49 16 23 C -0.14 -6.29 9.67 22.27 0.22 -6.07 16 24 C 0.11 2.40 3.41 30.59 0.10 2.51 16 25 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 26 C -0.18 -3.93 9.38 71.98 0.68 -3.26 16 27 O -0.57 -13.88 12.76 -148.98 -1.90 -15.79 16 28 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.04 1.57 7.85 -2.39 -0.02 1.55 16 30 H 0.03 1.35 5.64 -2.39 -0.01 1.33 16 31 H 0.06 1.85 7.83 -2.39 -0.02 1.83 16 32 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.40 13.26 6.83 -92.71 -0.63 12.63 16 34 H 0.27 13.40 8.31 -92.71 -0.77 12.63 16 35 H 0.09 4.42 7.89 -2.91 -0.02 4.40 16 36 H 0.13 4.17 8.06 -2.91 -0.02 4.14 16 37 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 38 H 0.14 4.06 8.06 -2.91 -0.02 4.03 16 39 H 0.11 4.57 7.96 -2.91 -0.02 4.55 16 40 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.05 1.27 7.45 -2.38 -0.02 1.26 16 43 H 0.38 8.53 7.51 -74.06 -0.56 7.98 16 Total: -1.00 -60.12 349.90 2.07 -58.04 By element: Atomic # 1 Polarization: 43.95 SS G_CDS: -0.18 Total: 43.77 kcal Atomic # 6 Polarization: -32.25 SS G_CDS: 3.75 Total: -28.50 kcal Atomic # 7 Polarization: -71.84 SS G_CDS: -1.58 Total: -73.43 kcal Atomic # 8 Polarization: -40.71 SS G_CDS: -1.94 Total: -42.65 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.76 kcal Total: -60.12 2.07 -58.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001449422843.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.688 kcal (2) G-P(sol) polarization free energy of solvation -60.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds