Wall clock time and date at job start Tue Mar 31 2020 06:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46782 * 2 1 4 4 H 1.09001 * 109.47417 * 54.99738 * 3 2 1 5 5 N 1.46500 * 109.46886 * 294.99628 * 3 2 1 6 6 C 1.34782 * 119.99629 * 155.00027 * 5 3 2 7 7 O 1.21279 * 119.99893 * 0.02562 * 6 5 3 8 8 C 1.50697 * 120.00048 * 180.02562 * 6 5 3 9 9 H 1.09002 * 109.47271 * 300.00527 * 8 6 5 10 10 C 1.50699 * 109.47217 * 60.00150 * 8 6 5 11 11 H 1.08007 * 119.99926 * 35.05284 * 10 8 6 12 12 C 1.37878 * 120.00678 * 215.05701 * 10 8 6 13 13 N 1.31520 * 119.99366 * 5.10833 * 12 10 8 14 14 Si 1.86793 * 120.00404 * 185.10673 * 12 10 8 15 15 H 1.48501 * 109.46865 * 60.00112 * 14 12 10 16 16 H 1.48498 * 109.47245 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47328 * 300.00088 * 14 12 10 18 18 C 1.50697 * 109.47508 * 180.02562 * 8 6 5 19 19 C 1.38234 * 120.00362 * 113.75391 * 18 8 6 20 20 C 1.38228 * 120.00198 * 179.97438 * 19 18 8 21 21 C 1.38238 * 120.00095 * 359.97438 * 20 19 18 22 22 C 1.38234 * 119.99757 * 359.97438 * 21 20 19 23 23 C 1.38234 * 119.99520 * 293.77923 * 18 8 6 24 24 C 1.53002 * 109.46923 * 175.00088 * 3 2 1 25 25 H 1.09004 * 109.46913 * 59.99864 * 24 3 2 26 26 C 1.52999 * 109.47189 * 179.97438 * 24 3 2 27 27 O 1.42904 * 109.46977 * 299.99844 * 24 3 2 28 28 H 1.09005 * 109.46928 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47466 * 300.00178 * 1 2 3 30 30 H 1.08999 * 109.47221 * 60.00089 * 1 2 3 31 31 H 1.09001 * 109.47038 * 240.00077 * 2 1 3 32 32 H 1.09000 * 109.46819 * 119.99556 * 2 1 3 33 33 H 0.96996 * 120.00714 * 335.00852 * 5 3 2 34 34 H 0.96997 * 119.99551 * 180.02562 * 13 12 10 35 35 H 1.08006 * 119.99876 * 359.97438 * 19 18 8 36 36 H 1.08004 * 120.00210 * 179.97438 * 20 19 18 37 37 H 1.07995 * 120.00072 * 179.72498 * 21 20 19 38 38 H 1.08007 * 119.99926 * 179.97438 * 22 21 20 39 39 H 1.07995 * 120.00334 * 359.97438 * 23 18 8 40 40 H 1.09001 * 109.47059 * 59.99706 * 26 24 3 41 41 H 1.08997 * 109.47098 * 179.97438 * 26 24 3 42 42 H 1.08998 * 109.47090 * 300.00194 * 26 24 3 43 43 H 0.96697 * 113.99760 * 300.00117 * 27 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 7 1.6524 2.0974 -1.2519 6 6 1.5255 3.4384 -1.2996 7 8 1.7326 4.1028 -0.3064 8 6 1.1263 4.1121 -2.5872 9 1 1.8645 3.8898 -3.3577 10 6 -0.2235 3.6030 -3.0230 11 1 -0.9727 3.3583 -2.2845 12 6 -0.5022 3.4493 -4.3646 13 7 0.4407 3.6504 -5.2592 14 14 -2.2186 2.9555 -4.9115 15 1 -3.1960 3.9769 -4.4568 16 1 -2.2575 2.8587 -6.3928 17 1 -2.5672 1.6389 -4.3196 18 6 1.0566 5.6023 -2.3739 19 6 1.9525 6.4353 -3.0176 20 6 1.8882 7.8022 -2.8224 21 6 0.9277 8.3363 -1.9838 22 6 0.0312 7.5033 -1.3409 23 6 0.0971 6.1361 -1.5341 24 6 3.5648 1.4444 0.1257 25 1 3.9994 0.9053 -0.7161 26 6 4.0748 2.8869 0.1251 27 8 3.9428 0.8055 1.3468 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.4870 1.5661 -2.0463 34 1 0.2446 3.5426 -6.2030 35 1 2.7026 6.0181 -3.6731 36 1 2.5884 8.4530 -3.3250 37 1 0.8804 9.4038 -1.8278 38 1 -0.7190 7.9205 -0.6854 39 1 -0.6028 5.4853 -1.0311 40 1 3.6402 3.4263 0.9666 41 1 5.1611 2.8882 0.2151 42 1 3.7864 3.3738 -0.8065 43 1 3.5906 1.2327 2.1396 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001449422850.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:04 Heat of formation + Delta-G solvation = -84.051447 kcal Electronic energy + Delta-G solvation = -24249.420333 eV Core-core repulsion = 20872.619628 eV Total energy + Delta-G solvation = -3376.800705 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.64528 -38.26554 -37.06049 -34.79097 -33.67274 -31.68026 -31.12987 -30.18010 -29.96250 -27.46959 -26.01864 -23.89530 -21.86317 -21.64847 -21.35942 -20.42444 -19.34579 -16.87517 -16.45759 -16.17369 -16.09430 -15.73195 -14.79578 -14.56077 -14.25296 -14.15070 -13.86471 -13.60653 -13.19608 -12.98214 -12.51179 -12.42476 -12.29282 -12.07705 -11.81358 -11.67233 -11.54590 -11.34188 -11.11176 -11.06432 -10.98533 -10.77625 -10.60538 -10.41060 -10.30495 -10.00405 -9.91310 -9.47230 -8.79988 -8.59330 -8.25937 -7.97360 -7.64073 -6.30712 -4.36095 2.34538 2.37684 3.18514 3.24587 3.26720 3.68705 3.94563 4.25968 4.56144 4.80708 4.90649 5.06899 5.13179 5.27692 5.44932 5.56994 5.67178 5.69691 5.76512 5.86697 5.91485 5.97493 6.09697 6.15356 6.16529 6.22684 6.27797 6.45102 6.49721 6.51120 6.56559 6.64744 6.84609 6.94845 7.14391 7.22970 7.34319 7.42073 7.59526 7.71975 7.73877 7.92855 8.04911 8.38167 8.68164 9.23056 9.30473 10.77780 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011572 B = 0.006916 C = 0.004938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.031658 B = 4047.370138 C = 5669.366285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C 0.117 3.883 4 H 0.082 0.918 5 N -0.720 5.720 6 C 0.529 3.471 7 O -0.564 6.564 8 C 0.048 3.952 9 H 0.091 0.909 10 C -0.514 4.514 11 H 0.061 0.939 12 C 0.075 3.925 13 N -0.880 5.880 14 Si 0.897 3.103 15 H -0.274 1.274 16 H -0.286 1.286 17 H -0.274 1.274 18 C -0.011 4.011 19 C -0.121 4.121 20 C -0.131 4.131 21 C -0.149 4.149 22 C -0.134 4.134 23 C -0.084 4.084 24 C 0.092 3.908 25 H 0.095 0.905 26 C -0.174 4.174 27 O -0.565 6.565 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.406 0.594 34 H 0.268 0.732 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.065 0.935 41 H 0.047 0.953 42 H 0.071 0.929 43 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.806 -2.812 6.826 7.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C 0.010 3.990 4 H 0.100 0.900 5 N -0.373 5.373 6 C 0.319 3.681 7 O -0.443 6.443 8 C 0.027 3.973 9 H 0.109 0.891 10 C -0.551 4.551 11 H 0.079 0.921 12 C -0.130 4.130 13 N -0.515 5.515 14 Si 0.724 3.276 15 H -0.200 1.200 16 H -0.211 1.211 17 H -0.200 1.200 18 C -0.012 4.012 19 C -0.139 4.139 20 C -0.150 4.150 21 C -0.167 4.167 22 C -0.152 4.152 23 C -0.102 4.102 24 C 0.032 3.968 25 H 0.112 0.888 26 C -0.231 4.231 27 O -0.369 6.369 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.241 0.759 34 H 0.077 0.923 35 H 0.129 0.871 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.129 0.871 40 H 0.084 0.916 41 H 0.066 0.934 42 H 0.090 0.910 43 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 3.311 -2.748 6.913 8.142 hybrid contribution -1.408 0.011 -0.568 1.518 sum 1.903 -2.738 6.345 7.168 Atomic orbital electron populations 1.21774 0.95347 1.01161 1.02758 1.21726 0.96377 0.95436 1.02798 1.21560 0.94166 0.93489 0.89734 0.89992 1.45914 1.71361 1.07758 1.12281 1.21560 0.73535 0.81428 0.91558 1.90581 1.51323 1.64481 1.37890 1.18133 1.00238 0.87789 0.91138 0.89096 1.20623 0.97229 1.45319 0.91974 0.92072 1.24952 0.97249 0.94122 0.96654 1.69866 1.32387 1.47509 1.01764 0.86570 0.84287 0.79205 0.77569 1.19956 1.21106 1.19956 1.20056 0.92154 0.96648 0.92342 1.20998 0.99412 0.93146 1.00348 1.20900 0.99111 0.95208 0.99739 1.20797 0.97512 0.98435 0.99932 1.20961 0.99424 0.94120 1.00743 1.20819 0.97914 0.93902 0.97607 1.22385 0.93994 0.93623 0.86829 0.88759 1.22488 0.99965 0.96350 1.04309 1.86535 1.76965 1.57500 1.15945 0.93109 0.93064 0.91533 0.91664 0.90554 0.75886 0.92253 0.87053 0.87582 0.87736 0.87636 0.87146 0.91645 0.93383 0.91028 0.78094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.80 37.16 0.36 -1.61 16 2 C -0.13 -1.57 5.40 -26.73 -0.14 -1.71 16 3 C 0.12 1.71 2.02 -67.93 -0.14 1.57 16 4 H 0.08 1.31 7.58 -51.93 -0.39 0.92 16 5 N -0.72 -12.41 4.32 -53.80 -0.23 -12.64 16 6 C 0.53 10.93 5.40 -10.98 -0.06 10.87 16 7 O -0.56 -12.47 12.55 5.56 0.07 -12.40 16 8 C 0.05 1.10 2.45 -94.08 -0.23 0.87 16 9 H 0.09 2.22 6.99 -51.93 -0.36 1.86 16 10 C -0.51 -12.44 7.46 -34.44 -0.26 -12.70 16 11 H 0.06 1.50 7.82 -52.48 -0.41 1.09 16 12 C 0.08 1.86 5.45 -17.82 -0.10 1.77 16 13 N -0.88 -22.72 12.77 55.43 0.71 -22.01 16 14 Si 0.90 19.69 29.54 -169.99 -5.02 14.67 16 15 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 16 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 18 C -0.01 -0.25 4.30 -104.63 -0.45 -0.70 16 19 C -0.12 -2.59 9.67 -39.59 -0.38 -2.97 16 20 C -0.13 -2.50 10.05 -39.59 -0.40 -2.90 16 21 C -0.15 -2.72 10.05 -39.58 -0.40 -3.12 16 22 C -0.13 -2.61 10.05 -39.58 -0.40 -3.01 16 23 C -0.08 -1.85 8.32 -39.58 -0.33 -2.18 16 24 C 0.09 1.29 3.35 -26.73 -0.09 1.20 16 25 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 26 C -0.17 -2.72 8.06 37.16 0.30 -2.42 16 27 O -0.57 -7.32 12.58 -35.23 -0.44 -7.76 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.98 7.75 -51.93 -0.40 0.58 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.89 7.54 -51.93 -0.39 0.49 16 33 H 0.41 6.92 8.49 -40.82 -0.35 6.57 16 34 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 35 H 0.11 2.30 7.96 -52.48 -0.42 1.88 16 36 H 0.11 1.71 8.06 -52.48 -0.42 1.28 16 37 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.11 1.76 8.06 -52.48 -0.42 1.34 16 39 H 0.11 2.46 7.89 -52.49 -0.41 2.05 16 40 H 0.06 1.08 7.53 -51.93 -0.39 0.69 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 1.29 5.78 -51.93 -0.30 0.99 16 43 H 0.37 3.70 9.05 45.56 0.41 4.11 16 LS Contribution 352.43 15.07 5.31 5.31 Total: -1.00 -27.44 352.43 -8.25 -35.69 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: -5.93 Total: 16.19 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: -2.71 Total: -17.05 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: 0.48 Total: -34.65 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.37 Total: -20.16 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -27.44 -8.25 -35.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001449422850.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.359 kcal (2) G-P(sol) polarization free energy of solvation -27.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds