Wall clock time and date at job start Tue Mar 31 2020 06:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46782 * 2 1 4 4 H 1.09001 * 109.47417 * 54.99738 * 3 2 1 5 5 N 1.46500 * 109.46886 * 294.99628 * 3 2 1 6 6 C 1.34782 * 119.99629 * 155.00027 * 5 3 2 7 7 O 1.21279 * 119.99893 * 0.02562 * 6 5 3 8 8 C 1.50697 * 120.00048 * 180.02562 * 6 5 3 9 9 H 1.09002 * 109.47271 * 300.00527 * 8 6 5 10 10 C 1.50699 * 109.47217 * 60.00150 * 8 6 5 11 11 H 1.08007 * 119.99926 * 35.05284 * 10 8 6 12 12 C 1.37878 * 120.00678 * 215.05701 * 10 8 6 13 13 N 1.31520 * 119.99366 * 5.10833 * 12 10 8 14 14 Si 1.86793 * 120.00404 * 185.10673 * 12 10 8 15 15 H 1.48501 * 109.46865 * 60.00112 * 14 12 10 16 16 H 1.48498 * 109.47245 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47328 * 300.00088 * 14 12 10 18 18 C 1.50697 * 109.47508 * 180.02562 * 8 6 5 19 19 C 1.38234 * 120.00362 * 113.75391 * 18 8 6 20 20 C 1.38228 * 120.00198 * 179.97438 * 19 18 8 21 21 C 1.38238 * 120.00095 * 359.97438 * 20 19 18 22 22 C 1.38234 * 119.99757 * 359.97438 * 21 20 19 23 23 C 1.38234 * 119.99520 * 293.77923 * 18 8 6 24 24 C 1.53002 * 109.46923 * 175.00088 * 3 2 1 25 25 H 1.09004 * 109.46913 * 59.99864 * 24 3 2 26 26 C 1.52999 * 109.47189 * 179.97438 * 24 3 2 27 27 O 1.42904 * 109.46977 * 299.99844 * 24 3 2 28 28 H 1.09005 * 109.46928 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47466 * 300.00178 * 1 2 3 30 30 H 1.08999 * 109.47221 * 60.00089 * 1 2 3 31 31 H 1.09001 * 109.47038 * 240.00077 * 2 1 3 32 32 H 1.09000 * 109.46819 * 119.99556 * 2 1 3 33 33 H 0.96996 * 120.00714 * 335.00852 * 5 3 2 34 34 H 0.96997 * 119.99551 * 180.02562 * 13 12 10 35 35 H 1.08006 * 119.99876 * 359.97438 * 19 18 8 36 36 H 1.08004 * 120.00210 * 179.97438 * 20 19 18 37 37 H 1.07995 * 120.00072 * 179.72498 * 21 20 19 38 38 H 1.08007 * 119.99926 * 179.97438 * 22 21 20 39 39 H 1.07995 * 120.00334 * 359.97438 * 23 18 8 40 40 H 1.09001 * 109.47059 * 59.99706 * 26 24 3 41 41 H 1.08997 * 109.47098 * 179.97438 * 26 24 3 42 42 H 1.08998 * 109.47090 * 300.00194 * 26 24 3 43 43 H 0.96697 * 113.99760 * 300.00117 * 27 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 7 1.6524 2.0974 -1.2519 6 6 1.5255 3.4384 -1.2996 7 8 1.7326 4.1028 -0.3064 8 6 1.1263 4.1121 -2.5872 9 1 1.8645 3.8898 -3.3577 10 6 -0.2235 3.6030 -3.0230 11 1 -0.9727 3.3583 -2.2845 12 6 -0.5022 3.4493 -4.3646 13 7 0.4407 3.6504 -5.2592 14 14 -2.2186 2.9555 -4.9115 15 1 -3.1960 3.9769 -4.4568 16 1 -2.2575 2.8587 -6.3928 17 1 -2.5672 1.6389 -4.3196 18 6 1.0566 5.6023 -2.3739 19 6 1.9525 6.4353 -3.0176 20 6 1.8882 7.8022 -2.8224 21 6 0.9277 8.3363 -1.9838 22 6 0.0312 7.5033 -1.3409 23 6 0.0971 6.1361 -1.5341 24 6 3.5648 1.4444 0.1257 25 1 3.9994 0.9053 -0.7161 26 6 4.0748 2.8869 0.1251 27 8 3.9428 0.8055 1.3468 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.4870 1.5661 -2.0463 34 1 0.2446 3.5426 -6.2030 35 1 2.7026 6.0181 -3.6731 36 1 2.5884 8.4530 -3.3250 37 1 0.8804 9.4038 -1.8278 38 1 -0.7190 7.9205 -0.6854 39 1 -0.6028 5.4853 -1.0311 40 1 3.6402 3.4263 0.9666 41 1 5.1611 2.8882 0.2151 42 1 3.7864 3.3738 -0.8065 43 1 3.5906 1.2327 2.1396 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001449422850.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:03 Heat of formation + Delta-G solvation = -100.747801 kcal Electronic energy + Delta-G solvation = -24250.144341 eV Core-core repulsion = 20872.619628 eV Total energy + Delta-G solvation = -3377.524713 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.15831 -39.73378 -38.43149 -36.04335 -35.48950 -33.06320 -32.76404 -31.54572 -31.44259 -29.10866 -27.33808 -25.68641 -23.23687 -23.00337 -22.78599 -21.74711 -20.95546 -18.67556 -17.73880 -17.71700 -17.52373 -17.22808 -16.32836 -16.11974 -15.70268 -15.59826 -15.30103 -14.83636 -14.68582 -14.47131 -14.05370 -13.96745 -13.66428 -13.43750 -13.30407 -13.18447 -12.94589 -12.83551 -12.75636 -12.55034 -12.21810 -12.15843 -11.96854 -11.94148 -11.72604 -11.63833 -11.26295 -11.09847 -10.68219 -10.31169 -9.69125 -9.56000 -9.25992 -8.21097 -6.30905 0.74933 0.80211 1.42096 1.44938 1.50651 2.02607 2.42905 2.53576 3.08612 3.26735 3.47005 3.74807 3.95625 4.12341 4.22147 4.29747 4.32534 4.39612 4.39727 4.47860 4.54239 4.65282 4.73960 4.87556 4.90012 4.93971 4.97390 5.09334 5.11303 5.14321 5.25225 5.32176 5.37308 5.44500 5.45899 5.64940 5.77863 5.78911 5.84528 5.96619 6.24304 6.40464 6.74100 6.76977 6.85307 7.35774 7.63486 8.86847 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011572 B = 0.006916 C = 0.004938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.031658 B = 4047.370138 C = 5669.366285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C 0.118 3.882 4 H 0.069 0.931 5 N -0.710 5.710 6 C 0.532 3.468 7 O -0.581 6.581 8 C 0.049 3.951 9 H 0.066 0.934 10 C -0.512 4.512 11 H 0.052 0.948 12 C 0.036 3.964 13 N -0.906 5.906 14 Si 0.949 3.051 15 H -0.280 1.280 16 H -0.284 1.284 17 H -0.264 1.264 18 C -0.038 4.038 19 C -0.145 4.145 20 C -0.129 4.129 21 C -0.144 4.144 22 C -0.135 4.135 23 C -0.109 4.109 24 C 0.104 3.896 25 H 0.098 0.902 26 C -0.167 4.167 27 O -0.563 6.563 28 H 0.070 0.930 29 H 0.048 0.952 30 H 0.041 0.959 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.407 0.593 34 H 0.267 0.733 35 H 0.105 0.895 36 H 0.138 0.862 37 H 0.146 0.854 38 H 0.135 0.865 39 H 0.096 0.904 40 H 0.053 0.947 41 H 0.059 0.941 42 H 0.043 0.957 43 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.648 -2.705 7.684 8.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C 0.013 3.987 4 H 0.087 0.913 5 N -0.362 5.362 6 C 0.321 3.679 7 O -0.462 6.462 8 C 0.028 3.972 9 H 0.084 0.916 10 C -0.550 4.550 11 H 0.070 0.930 12 C -0.166 4.166 13 N -0.543 5.543 14 Si 0.774 3.226 15 H -0.206 1.206 16 H -0.210 1.210 17 H -0.188 1.188 18 C -0.039 4.039 19 C -0.163 4.163 20 C -0.147 4.147 21 C -0.161 4.161 22 C -0.153 4.153 23 C -0.127 4.127 24 C 0.043 3.957 25 H 0.116 0.884 26 C -0.225 4.225 27 O -0.369 6.369 28 H 0.089 0.911 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.113 0.887 33 H 0.242 0.758 34 H 0.076 0.924 35 H 0.124 0.876 36 H 0.156 0.844 37 H 0.164 0.836 38 H 0.152 0.848 39 H 0.114 0.886 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.062 0.938 43 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 3.153 -2.672 7.794 8.822 hybrid contribution -1.315 0.032 -0.757 1.518 sum 1.838 -2.640 7.036 7.737 Atomic orbital electron populations 1.21749 0.95604 1.02044 1.01431 1.21695 0.96018 0.93718 1.04025 1.21706 0.94771 0.94493 0.87743 0.91251 1.45827 1.70259 1.06699 1.13405 1.21158 0.73724 0.82458 0.90566 1.90555 1.52376 1.65165 1.38079 1.18016 0.98891 0.88768 0.91499 0.91582 1.20694 0.97615 1.44842 0.91855 0.92973 1.25543 0.99958 0.94384 0.96728 1.69969 1.33748 1.48834 1.01787 0.85751 0.80626 0.79085 0.77109 1.20575 1.20973 1.18821 1.20151 0.93423 0.96625 0.93683 1.21143 0.99647 0.94611 1.00907 1.21291 0.99608 0.94403 0.99386 1.21261 0.96103 1.00385 0.98385 1.21327 1.00127 0.93088 1.00741 1.20843 0.98127 0.95304 0.98461 1.22164 0.93167 0.92615 0.87724 0.88398 1.22398 1.00679 0.97127 1.02250 1.86516 1.76983 1.57354 1.16077 0.91130 0.93285 0.93937 0.90899 0.88700 0.75779 0.92415 0.87644 0.84373 0.83647 0.84759 0.88625 0.92751 0.92182 0.93841 0.76405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.80 71.98 0.71 -3.01 16 2 C -0.12 -2.73 5.40 30.59 0.17 -2.56 16 3 C 0.12 3.40 2.02 44.99 0.09 3.49 16 4 H 0.07 2.21 7.58 -2.39 -0.02 2.19 16 5 N -0.71 -25.07 4.32 -442.53 -1.91 -26.98 16 6 C 0.53 22.83 5.40 87.66 0.47 23.30 16 7 O -0.58 -26.59 12.55 -3.03 -0.04 -26.63 16 8 C 0.05 2.36 2.45 -13.03 -0.03 2.33 16 9 H 0.07 3.43 6.99 -2.39 -0.02 3.42 16 10 C -0.51 -25.63 7.46 25.60 0.19 -25.44 16 11 H 0.05 2.65 7.82 -2.91 -0.02 2.62 16 12 C 0.04 1.81 5.45 84.65 0.46 2.27 16 13 N -0.91 -48.08 12.77 21.45 0.27 -47.81 16 14 Si 0.95 40.76 29.54 68.60 2.03 42.79 16 15 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 16 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 17 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 18 C -0.04 -1.78 4.30 -19.87 -0.09 -1.87 16 19 C -0.14 -6.31 9.67 22.27 0.22 -6.10 16 20 C -0.13 -4.69 10.05 22.27 0.22 -4.47 16 21 C -0.14 -4.86 10.05 22.27 0.22 -4.64 16 22 C -0.13 -5.04 10.05 22.27 0.22 -4.82 16 23 C -0.11 -4.87 8.32 22.27 0.19 -4.69 16 24 C 0.10 2.82 3.35 30.59 0.10 2.92 16 25 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 26 C -0.17 -5.24 8.06 71.98 0.58 -4.66 16 27 O -0.56 -13.37 12.58 -148.98 -1.87 -15.25 16 28 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 29 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.04 1.24 7.75 -2.39 -0.02 1.22 16 31 H 0.07 1.62 8.14 -2.39 -0.02 1.61 16 32 H 0.09 1.93 7.54 -2.39 -0.02 1.91 16 33 H 0.41 14.23 8.49 -92.71 -0.79 13.45 16 34 H 0.27 13.59 8.31 -92.71 -0.77 12.82 16 35 H 0.11 4.56 7.96 -2.91 -0.02 4.54 16 36 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 37 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 38 H 0.13 4.14 8.06 -2.91 -0.02 4.11 16 39 H 0.10 4.42 7.89 -2.91 -0.02 4.40 16 40 H 0.05 1.80 7.53 -2.39 -0.02 1.78 16 41 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.04 1.61 5.78 -2.39 -0.01 1.60 16 43 H 0.39 6.86 9.05 -74.06 -0.67 6.19 16 Total: -1.00 -59.98 352.43 1.76 -58.22 By element: Atomic # 1 Polarization: 44.02 SS G_CDS: -0.45 Total: 43.58 kcal Atomic # 6 Polarization: -31.65 SS G_CDS: 3.72 Total: -27.93 kcal Atomic # 7 Polarization: -73.15 SS G_CDS: -1.64 Total: -74.79 kcal Atomic # 8 Polarization: -39.96 SS G_CDS: -1.91 Total: -41.87 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.79 kcal Total: -59.98 1.76 -58.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001449422850.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.524 kcal (2) G-P(sol) polarization free energy of solvation -59.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds