Wall clock time and date at job start Tue Mar 31 2020 06:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52990 * 109.47303 * 2 1 4 4 H 1.09005 * 109.47182 * 54.99455 * 3 2 1 5 5 C 1.52997 * 109.47500 * 175.00009 * 3 2 1 6 6 N 1.46502 * 109.47201 * 185.22408 * 5 3 2 7 7 C 1.34776 * 119.99858 * 185.28215 * 6 5 3 8 8 O 1.21284 * 119.99791 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00268 * 180.02562 * 7 6 5 10 10 H 1.08998 * 109.47180 * 300.00659 * 9 7 6 11 11 C 1.50701 * 109.46803 * 59.99817 * 9 7 6 12 12 H 1.08008 * 119.99953 * 33.29673 * 11 9 7 13 13 C 1.37875 * 120.00229 * 213.28947 * 11 9 7 14 14 N 1.31515 * 120.00435 * 187.09907 * 13 11 9 15 15 Si 1.86799 * 119.99820 * 7.10247 * 13 11 9 16 16 H 1.48501 * 109.47239 * 275.50630 * 15 13 11 17 17 H 1.48496 * 109.47346 * 35.50645 * 15 13 11 18 18 H 1.48504 * 109.47290 * 155.50954 * 15 13 11 19 19 C 1.50699 * 109.47356 * 179.97438 * 9 7 6 20 20 C 1.38235 * 120.00152 * 294.44714 * 19 9 7 21 21 C 1.38235 * 119.99844 * 179.78643 * 20 19 9 22 22 C 1.38234 * 119.99995 * 0.44743 * 21 20 19 23 23 C 1.38235 * 120.00034 * 359.80802 * 22 21 20 24 24 C 1.38232 * 119.99692 * 114.72431 * 19 9 7 25 25 O 1.42903 * 109.46961 * 295.00142 * 3 2 1 26 26 C 1.42901 * 114.00183 * 128.47494 * 25 3 2 27 27 H 1.08997 * 109.47079 * 299.99854 * 1 2 3 28 28 H 1.09000 * 109.47034 * 60.00234 * 1 2 3 29 29 H 1.09002 * 109.47207 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46799 * 239.99763 * 2 1 3 31 31 H 1.09001 * 109.46819 * 120.00268 * 2 1 3 32 32 H 1.09001 * 109.47217 * 65.22657 * 5 3 2 33 33 H 1.08998 * 109.47090 * 305.22911 * 5 3 2 34 34 H 0.96995 * 120.00082 * 5.28198 * 6 5 3 35 35 H 0.96997 * 120.00377 * 179.97438 * 14 13 11 36 36 H 1.08001 * 119.99710 * 359.97438 * 20 19 9 37 37 H 1.07999 * 120.00146 * 180.27535 * 21 20 19 38 38 H 1.07999 * 119.99946 * 179.83654 * 22 21 20 39 39 H 1.08000 * 120.00032 * 180.02562 * 23 22 21 40 40 H 1.08007 * 120.00217 * 359.97438 * 24 19 9 41 41 H 1.09000 * 109.47459 * 185.11292 * 26 25 3 42 42 H 1.09002 * 109.46809 * 305.11153 * 26 25 3 43 43 H 1.08998 * 109.47521 * 65.11138 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4443 0.1257 6 7 4.0428 2.8234 0.2512 7 6 5.3660 3.0791 0.2681 8 8 6.1609 2.1675 0.1790 9 6 5.8577 4.4977 0.3977 10 1 5.4859 5.0890 -0.4390 11 6 5.3565 5.0869 1.6910 12 1 5.2360 4.4573 2.5604 13 6 5.0518 6.4295 1.7646 14 7 4.7490 6.9726 2.9235 15 14 5.0689 7.4773 0.2182 16 1 6.4539 7.9409 -0.0502 17 1 4.5853 6.6711 -0.9313 18 1 4.1813 8.6528 0.4068 19 6 7.3647 4.5096 0.3916 20 6 8.0647 3.9208 1.4280 21 6 9.4471 3.9278 1.4201 22 6 10.1292 4.5317 0.3805 23 6 9.4291 5.1252 -0.6533 24 6 8.0468 5.1143 -0.6476 25 8 1.6620 2.0813 -1.2211 26 6 0.9981 3.3338 -1.0405 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 4.0031 0.9872 -0.7615 33 1 3.8573 0.8766 1.0090 34 1 3.4070 3.5525 0.3220 35 1 4.5350 7.9173 2.9753 36 1 7.5317 3.4526 2.2423 37 1 9.9941 3.4639 2.2275 38 1 11.2092 4.5395 0.3757 39 1 9.9621 5.5966 -1.4657 40 1 7.4998 5.5779 -1.4553 41 1 0.6638 3.7106 -2.0071 42 1 0.1370 3.1975 -0.3861 43 1 1.6869 4.0486 -0.5903 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001527479339.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:16 Heat of formation + Delta-G solvation = -73.619196 kcal Electronic energy + Delta-G solvation = -23639.771206 eV Core-core repulsion = 20263.422877 eV Total energy + Delta-G solvation = -3376.348329 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.46325 -38.56613 -37.60861 -34.18845 -33.65095 -33.12469 -31.49595 -30.09160 -29.00058 -27.56778 -26.21569 -23.93124 -22.98090 -21.80915 -21.22913 -20.86429 -19.19984 -17.16562 -16.89777 -16.53698 -16.08441 -15.54159 -15.18118 -14.60340 -14.50944 -14.28414 -13.94812 -13.89880 -13.59498 -13.31227 -12.97313 -12.68345 -12.65023 -12.42022 -12.18146 -12.00456 -11.82131 -11.51932 -11.36931 -11.13971 -11.11266 -11.04587 -10.72471 -10.42195 -10.25980 -9.93744 -9.57335 -9.54850 -8.94542 -8.70476 -8.38894 -8.09322 -7.78088 -6.32497 -4.36173 2.19486 2.25973 3.13713 3.19983 3.24511 3.61366 3.76841 3.89472 4.20208 4.65982 4.78784 4.95566 5.00095 5.00592 5.22458 5.32440 5.46079 5.52120 5.58615 5.63696 5.66827 5.73358 5.75826 5.83937 5.86771 5.94745 5.97838 5.99918 6.15323 6.24364 6.32338 6.35345 6.48614 6.77650 6.88768 7.11353 7.20706 7.21198 7.28784 7.29662 7.62861 7.83762 8.17869 8.28711 8.67691 9.12932 9.25871 10.78561 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014910 B = 0.005234 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.528701 B = 5348.310932 C = 6406.409721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.076 3.924 4 H 0.071 0.929 5 C 0.108 3.892 6 N -0.726 5.726 7 C 0.535 3.465 8 O -0.561 6.561 9 C 0.021 3.979 10 H 0.068 0.932 11 C -0.512 4.512 12 H 0.082 0.918 13 C 0.086 3.914 14 N -0.882 5.882 15 Si 0.864 3.136 16 H -0.266 1.266 17 H -0.263 1.263 18 H -0.284 1.284 19 C -0.026 4.026 20 C -0.071 4.071 21 C -0.130 4.130 22 C -0.143 4.143 23 C -0.129 4.129 24 C -0.136 4.136 25 O -0.379 6.379 26 C 0.027 3.973 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.401 0.599 35 H 0.269 0.731 36 H 0.116 0.884 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.084 0.916 42 H 0.042 0.958 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.172 -7.177 -6.052 10.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C 0.018 3.982 4 H 0.089 0.911 5 C -0.016 4.016 6 N -0.379 5.379 7 C 0.324 3.676 8 O -0.440 6.440 9 C 0.000 4.000 10 H 0.086 0.914 11 C -0.549 4.549 12 H 0.100 0.900 13 C -0.119 4.119 14 N -0.517 5.517 15 Si 0.690 3.310 16 H -0.191 1.191 17 H -0.188 1.188 18 H -0.210 1.210 19 C -0.027 4.027 20 C -0.089 4.089 21 C -0.148 4.148 22 C -0.162 4.162 23 C -0.147 4.147 24 C -0.154 4.154 25 O -0.298 6.298 26 C -0.069 4.069 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.236 0.764 35 H 0.079 0.921 36 H 0.134 0.866 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.125 0.875 41 H 0.102 0.898 42 H 0.060 0.940 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.632 -7.729 -6.178 10.925 hybrid contribution -0.378 1.318 -0.360 1.418 sum -5.010 -6.410 -6.537 10.437 Atomic orbital electron populations 1.21721 0.95376 1.01611 1.02005 1.21689 0.96501 0.95169 1.03079 1.22487 0.93844 0.94329 0.87534 0.91081 1.21652 0.92748 0.85169 1.02063 1.45826 1.07979 1.07962 1.76114 1.21108 0.81275 0.92098 0.73128 1.90592 1.54974 1.47836 1.50589 1.18509 0.89887 0.91040 1.00587 0.91398 1.20535 1.44971 0.94668 0.94744 0.90010 1.24976 0.93767 0.97295 0.95864 1.69871 1.45124 1.12876 1.23830 0.87010 0.79428 0.80451 0.84089 1.19063 1.18813 1.21024 1.20041 0.96125 0.93928 0.92587 1.20829 0.93072 0.97309 0.97736 1.21026 0.94653 1.00676 0.98410 1.20854 0.98716 1.00977 0.95607 1.20873 0.94147 1.01026 0.98657 1.20962 0.94231 1.01758 0.98455 1.87916 1.77606 1.34693 1.29591 1.22900 0.96001 0.85727 1.02303 0.92952 0.92199 0.92670 0.90843 0.90545 0.91111 0.91309 0.76379 0.92123 0.86553 0.87145 0.87348 0.87289 0.87489 0.89775 0.93970 0.93533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.81 37.16 0.36 -1.00 16 2 C -0.13 -1.31 5.64 -26.74 -0.15 -1.46 16 3 C 0.08 0.96 2.27 -26.74 -0.06 0.90 16 4 H 0.07 0.86 7.59 -51.93 -0.39 0.47 16 5 C 0.11 1.69 5.34 -4.04 -0.02 1.67 16 6 N -0.73 -13.52 5.40 -60.29 -0.33 -13.85 16 7 C 0.54 11.85 7.04 -10.99 -0.08 11.77 16 8 O -0.56 -13.57 15.39 5.55 0.09 -13.48 16 9 C 0.02 0.49 1.96 -94.08 -0.18 0.31 16 10 H 0.07 1.54 4.81 -51.93 -0.25 1.29 16 11 C -0.51 -13.11 8.03 -34.44 -0.28 -13.38 16 12 H 0.08 2.30 8.06 -52.48 -0.42 1.88 16 13 C 0.09 2.26 5.47 -17.82 -0.10 2.16 16 14 N -0.88 -24.73 13.96 55.43 0.77 -23.96 16 15 Si 0.86 19.72 27.33 -169.99 -4.65 15.08 16 16 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.26 -5.60 6.38 56.52 0.36 -5.24 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 C -0.03 -0.59 4.31 -104.63 -0.45 -1.04 16 20 C -0.07 -1.59 8.28 -39.58 -0.33 -1.92 16 21 C -0.13 -2.51 10.05 -39.58 -0.40 -2.91 16 22 C -0.14 -2.58 10.05 -39.58 -0.40 -2.97 16 23 C -0.13 -2.39 10.05 -39.58 -0.40 -2.79 16 24 C -0.14 -2.84 9.67 -39.58 -0.38 -3.22 16 25 O -0.38 -5.13 9.83 -35.23 -0.35 -5.48 16 26 C 0.03 0.32 10.66 101.05 1.08 1.39 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.58 7.82 -51.93 -0.41 0.17 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 1.17 8.13 -51.93 -0.42 0.75 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.40 7.14 6.83 -40.82 -0.28 6.87 16 35 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 36 H 0.12 2.68 7.91 -52.49 -0.42 2.27 16 37 H 0.11 1.83 8.06 -52.49 -0.42 1.40 16 38 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.11 2.07 7.95 -52.48 -0.42 1.65 16 41 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.04 0.42 8.08 -51.93 -0.42 0.00 16 43 H 0.05 0.58 6.72 -51.93 -0.35 0.23 16 LS Contribution 356.34 15.07 5.37 5.37 Total: -1.00 -30.32 356.34 -7.63 -37.95 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -6.76 Total: 10.86 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -1.78 Total: -12.49 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.45 Total: -37.81 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.26 Total: -18.96 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.65 Total: 15.08 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.32 -7.63 -37.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527479339.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.670 kcal (2) G-P(sol) polarization free energy of solvation -30.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds