Wall clock time and date at job start Tue Mar 31 2020 06:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52990 * 109.47303 * 2 1 4 4 H 1.09005 * 109.47182 * 54.99455 * 3 2 1 5 5 C 1.52997 * 109.47500 * 175.00009 * 3 2 1 6 6 N 1.46502 * 109.47201 * 185.22408 * 5 3 2 7 7 C 1.34776 * 119.99858 * 185.28215 * 6 5 3 8 8 O 1.21284 * 119.99791 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00268 * 180.02562 * 7 6 5 10 10 H 1.08998 * 109.47180 * 300.00659 * 9 7 6 11 11 C 1.50701 * 109.46803 * 59.99817 * 9 7 6 12 12 H 1.08008 * 119.99953 * 33.29673 * 11 9 7 13 13 C 1.37875 * 120.00229 * 213.28947 * 11 9 7 14 14 N 1.31515 * 120.00435 * 187.09907 * 13 11 9 15 15 Si 1.86799 * 119.99820 * 7.10247 * 13 11 9 16 16 H 1.48501 * 109.47239 * 275.50630 * 15 13 11 17 17 H 1.48496 * 109.47346 * 35.50645 * 15 13 11 18 18 H 1.48504 * 109.47290 * 155.50954 * 15 13 11 19 19 C 1.50699 * 109.47356 * 179.97438 * 9 7 6 20 20 C 1.38235 * 120.00152 * 294.44714 * 19 9 7 21 21 C 1.38235 * 119.99844 * 179.78643 * 20 19 9 22 22 C 1.38234 * 119.99995 * 0.44743 * 21 20 19 23 23 C 1.38235 * 120.00034 * 359.80802 * 22 21 20 24 24 C 1.38232 * 119.99692 * 114.72431 * 19 9 7 25 25 O 1.42903 * 109.46961 * 295.00142 * 3 2 1 26 26 C 1.42901 * 114.00183 * 128.47494 * 25 3 2 27 27 H 1.08997 * 109.47079 * 299.99854 * 1 2 3 28 28 H 1.09000 * 109.47034 * 60.00234 * 1 2 3 29 29 H 1.09002 * 109.47207 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46799 * 239.99763 * 2 1 3 31 31 H 1.09001 * 109.46819 * 120.00268 * 2 1 3 32 32 H 1.09001 * 109.47217 * 65.22657 * 5 3 2 33 33 H 1.08998 * 109.47090 * 305.22911 * 5 3 2 34 34 H 0.96995 * 120.00082 * 5.28198 * 6 5 3 35 35 H 0.96997 * 120.00377 * 179.97438 * 14 13 11 36 36 H 1.08001 * 119.99710 * 359.97438 * 20 19 9 37 37 H 1.07999 * 120.00146 * 180.27535 * 21 20 19 38 38 H 1.07999 * 119.99946 * 179.83654 * 22 21 20 39 39 H 1.08000 * 120.00032 * 180.02562 * 23 22 21 40 40 H 1.08007 * 120.00217 * 359.97438 * 24 19 9 41 41 H 1.09000 * 109.47459 * 185.11292 * 26 25 3 42 42 H 1.09002 * 109.46809 * 305.11153 * 26 25 3 43 43 H 1.08998 * 109.47521 * 65.11138 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4443 0.1257 6 7 4.0428 2.8234 0.2512 7 6 5.3660 3.0791 0.2681 8 8 6.1609 2.1675 0.1790 9 6 5.8577 4.4977 0.3977 10 1 5.4859 5.0890 -0.4390 11 6 5.3565 5.0869 1.6910 12 1 5.2360 4.4573 2.5604 13 6 5.0518 6.4295 1.7646 14 7 4.7490 6.9726 2.9235 15 14 5.0689 7.4773 0.2182 16 1 6.4539 7.9409 -0.0502 17 1 4.5853 6.6711 -0.9313 18 1 4.1813 8.6528 0.4068 19 6 7.3647 4.5096 0.3916 20 6 8.0647 3.9208 1.4280 21 6 9.4471 3.9278 1.4201 22 6 10.1292 4.5317 0.3805 23 6 9.4291 5.1252 -0.6533 24 6 8.0468 5.1143 -0.6476 25 8 1.6620 2.0813 -1.2211 26 6 0.9981 3.3338 -1.0405 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 4.0031 0.9872 -0.7615 33 1 3.8573 0.8766 1.0090 34 1 3.4070 3.5525 0.3220 35 1 4.5350 7.9173 2.9753 36 1 7.5317 3.4526 2.2423 37 1 9.9941 3.4639 2.2275 38 1 11.2092 4.5395 0.3757 39 1 9.9621 5.5966 -1.4657 40 1 7.4998 5.5779 -1.4553 41 1 0.6638 3.7106 -2.0071 42 1 0.1370 3.1975 -0.3861 43 1 1.6869 4.0486 -0.5903 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001527479339.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:15 Heat of formation + Delta-G solvation = -92.480125 kcal Electronic energy + Delta-G solvation = -23640.589077 eV Core-core repulsion = 20263.422877 eV Total energy + Delta-G solvation = -3377.166200 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.06921 -39.82748 -39.06648 -35.57241 -35.49160 -34.22930 -33.33620 -31.63144 -30.28610 -29.06896 -27.28276 -25.60894 -24.26627 -23.36413 -22.42912 -22.24172 -20.82777 -19.13252 -18.14455 -17.89551 -17.69860 -16.95818 -16.42115 -16.28792 -15.88095 -15.72323 -15.43193 -15.17865 -14.82791 -14.65132 -14.29127 -14.23970 -14.14451 -13.96161 -13.62989 -13.46032 -13.06182 -12.96290 -12.78066 -12.44427 -12.28725 -12.03198 -12.00053 -11.99902 -11.65339 -11.62935 -11.42914 -10.91739 -10.73665 -10.43827 -9.96102 -9.64789 -9.37828 -8.36312 -6.44174 0.63896 0.70472 1.32059 1.37086 1.42038 1.84931 2.28745 2.40771 2.78156 2.93649 3.15685 3.72099 3.96812 4.05820 4.08761 4.20443 4.26896 4.34079 4.38523 4.39783 4.47198 4.53259 4.55888 4.59495 4.65802 4.80497 4.81740 4.84940 4.89380 4.98169 5.11585 5.18588 5.19740 5.31462 5.39284 5.42285 5.59822 5.69291 5.73427 5.94029 6.18761 6.21911 6.29877 6.57522 6.63783 7.20780 7.41577 8.78181 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014910 B = 0.005234 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.528701 B = 5348.310932 C = 6406.409721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.123 4.123 3 C 0.083 3.917 4 H 0.077 0.923 5 C 0.106 3.894 6 N -0.718 5.718 7 C 0.530 3.470 8 O -0.586 6.586 9 C 0.024 3.976 10 H 0.074 0.926 11 C -0.502 4.502 12 H 0.039 0.961 13 C 0.039 3.961 14 N -0.928 5.928 15 Si 0.919 3.081 16 H -0.265 1.265 17 H -0.238 1.238 18 H -0.280 1.280 19 C -0.056 4.056 20 C -0.103 4.103 21 C -0.134 4.134 22 C -0.137 4.137 23 C -0.125 4.125 24 C -0.153 4.153 25 O -0.393 6.393 26 C 0.021 3.979 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.405 0.595 35 H 0.271 0.729 36 H 0.089 0.911 37 H 0.135 0.865 38 H 0.151 0.849 39 H 0.149 0.851 40 H 0.120 0.880 41 H 0.099 0.901 42 H 0.059 0.941 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.625 -6.977 -8.045 11.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.161 4.161 3 C 0.024 3.976 4 H 0.095 0.905 5 C -0.018 4.018 6 N -0.369 5.369 7 C 0.318 3.682 8 O -0.467 6.467 9 C 0.003 3.997 10 H 0.092 0.908 11 C -0.540 4.540 12 H 0.057 0.943 13 C -0.162 4.162 14 N -0.565 5.565 15 Si 0.742 3.258 16 H -0.190 1.190 17 H -0.162 1.162 18 H -0.206 1.206 19 C -0.057 4.057 20 C -0.121 4.121 21 C -0.151 4.151 22 C -0.154 4.154 23 C -0.143 4.143 24 C -0.171 4.171 25 O -0.312 6.312 26 C -0.075 4.075 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.241 0.759 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.153 0.847 38 H 0.169 0.831 39 H 0.166 0.834 40 H 0.138 0.862 41 H 0.118 0.882 42 H 0.078 0.922 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -4.119 -7.549 -8.183 11.870 hybrid contribution -0.479 1.180 0.312 1.311 sum -4.598 -6.369 -7.870 11.120 Atomic orbital electron populations 1.21691 0.94075 1.02584 1.01956 1.21696 0.97548 0.93363 1.03532 1.22485 0.91432 0.96021 0.87634 0.90533 1.21859 0.95112 0.83246 1.01591 1.45831 1.06954 1.09545 1.74563 1.21037 0.82253 0.91616 0.73285 1.90561 1.55860 1.48247 1.52074 1.18439 0.90817 0.91449 0.99015 0.90802 1.20432 1.44623 0.94330 0.94581 0.94278 1.25679 0.93379 0.98388 0.98711 1.69996 1.47022 1.13360 1.26130 0.86119 0.79456 0.79033 0.81162 1.19039 1.16187 1.20556 1.20094 0.95782 0.95802 0.94040 1.20815 0.94745 0.98974 0.97580 1.21359 0.93492 1.00489 0.99803 1.21351 1.00852 0.98980 0.94246 1.21361 0.93312 0.99956 0.99634 1.21242 0.95760 1.01858 0.98288 1.87901 1.77874 1.35447 1.29991 1.23052 0.96125 0.84692 1.03607 0.92522 0.92699 0.91222 0.91024 0.89518 0.92002 0.91329 0.75936 0.92001 0.89317 0.84735 0.83138 0.83379 0.86205 0.88219 0.92216 0.94874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.81 71.98 0.71 -1.67 16 2 C -0.12 -2.40 5.64 30.59 0.17 -2.22 16 3 C 0.08 2.03 2.27 30.59 0.07 2.10 16 4 H 0.08 1.80 7.59 -2.38 -0.02 1.78 16 5 C 0.11 3.34 5.34 86.38 0.46 3.80 16 6 N -0.72 -27.35 5.40 -463.06 -2.50 -29.85 16 7 C 0.53 24.16 7.04 87.66 0.62 24.77 16 8 O -0.59 -29.25 15.39 -3.04 -0.05 -29.29 16 9 C 0.02 1.14 1.96 -13.03 -0.03 1.11 16 10 H 0.07 3.32 4.81 -2.39 -0.01 3.31 16 11 C -0.50 -26.78 8.03 25.60 0.21 -26.58 16 12 H 0.04 2.36 8.06 -2.91 -0.02 2.34 16 13 C 0.04 2.10 5.47 84.65 0.46 2.56 16 14 N -0.93 -53.69 13.96 21.45 0.30 -53.39 16 15 Si 0.92 40.31 27.33 68.60 1.87 42.18 16 16 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 17 H -0.24 -9.39 6.38 99.48 0.63 -8.76 16 18 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 19 C -0.06 -2.59 4.31 -19.87 -0.09 -2.68 16 20 C -0.10 -4.71 8.28 22.27 0.18 -4.52 16 21 C -0.13 -5.01 10.05 22.27 0.22 -4.79 16 22 C -0.14 -4.43 10.05 22.27 0.22 -4.21 16 23 C -0.12 -4.19 10.05 22.27 0.22 -3.97 16 24 C -0.15 -6.15 9.67 22.27 0.22 -5.93 16 25 O -0.39 -10.25 9.83 -148.98 -1.46 -11.71 16 26 C 0.02 0.47 10.66 113.37 1.21 1.68 16 27 H 0.06 0.87 8.14 -2.39 -0.02 0.86 16 28 H 0.05 0.96 7.82 -2.39 -0.02 0.94 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 30 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.06 2.08 8.13 -2.39 -0.02 2.06 16 33 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.40 14.70 6.83 -92.71 -0.63 14.07 16 35 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 36 H 0.09 4.40 7.91 -2.91 -0.02 4.38 16 37 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 38 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 39 H 0.15 3.78 8.06 -2.91 -0.02 3.75 16 40 H 0.12 4.36 7.95 -2.91 -0.02 4.34 16 41 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.06 1.08 8.08 -2.39 -0.02 1.06 16 43 H 0.03 0.80 6.72 -2.39 -0.02 0.78 16 Total: -1.00 -67.73 356.34 3.31 -64.42 By element: Atomic # 1 Polarization: 37.89 SS G_CDS: 0.28 Total: 38.18 kcal Atomic # 6 Polarization: -25.40 SS G_CDS: 4.86 Total: -20.54 kcal Atomic # 7 Polarization: -81.03 SS G_CDS: -2.20 Total: -83.23 kcal Atomic # 8 Polarization: -39.50 SS G_CDS: -1.51 Total: -41.01 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 1.87 Total: 42.18 kcal Total: -67.73 3.31 -64.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527479339.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.061 kcal (2) G-P(sol) polarization free energy of solvation -67.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds