Wall clock time and date at job start Tue Mar 31 2020 06:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46953 * 2 1 4 4 H 1.08994 * 109.47300 * 304.49477 * 3 2 1 5 5 C 1.52999 * 109.46897 * 184.49059 * 3 2 1 6 6 N 1.46500 * 109.47212 * 180.02562 * 5 3 2 7 7 C 1.34777 * 120.00417 * 179.97438 * 6 5 3 8 8 O 1.21289 * 119.99644 * 0.02562 * 7 6 5 9 9 C 1.50691 * 120.00229 * 180.02562 * 7 6 5 10 10 H 1.09000 * 109.47738 * 300.00455 * 9 7 6 11 11 C 1.50704 * 109.47151 * 60.00362 * 9 7 6 12 12 H 1.08002 * 119.99733 * 27.26350 * 11 9 7 13 13 C 1.37880 * 119.99907 * 207.26116 * 11 9 7 14 14 N 1.31513 * 120.00272 * 359.47317 * 13 11 9 15 15 Si 1.86799 * 119.99714 * 179.47002 * 13 11 9 16 16 H 1.48499 * 109.47270 * 270.00250 * 15 13 11 17 17 H 1.48504 * 109.47180 * 30.00189 * 15 13 11 18 18 H 1.48506 * 109.46998 * 150.00209 * 15 13 11 19 19 C 1.50699 * 109.47127 * 180.02562 * 9 7 6 20 20 C 1.38228 * 120.00186 * 293.61086 * 19 9 7 21 21 C 1.38241 * 120.00140 * 179.78880 * 20 19 9 22 22 C 1.38237 * 119.99755 * 0.44007 * 21 20 19 23 23 C 1.38229 * 120.00049 * 359.81441 * 22 21 20 24 24 C 1.38235 * 120.00054 * 113.88403 * 19 9 7 25 25 O 1.42902 * 109.46875 * 64.49667 * 3 2 1 26 26 C 1.42896 * 113.99779 * 257.41411 * 25 3 2 27 27 H 1.09001 * 109.47120 * 174.92912 * 1 2 3 28 28 H 1.08999 * 109.47324 * 294.93357 * 1 2 3 29 29 H 1.09006 * 109.47054 * 54.93424 * 1 2 3 30 30 H 1.09004 * 109.46812 * 240.00301 * 2 1 3 31 31 H 1.08994 * 109.47120 * 120.00398 * 2 1 3 32 32 H 1.09002 * 109.46990 * 60.00529 * 5 3 2 33 33 H 1.09001 * 109.47613 * 300.00656 * 5 3 2 34 34 H 0.96997 * 120.00064 * 0.02562 * 6 5 3 35 35 H 0.97005 * 120.00147 * 357.84260 * 14 13 11 36 36 H 1.08005 * 120.00049 * 359.97438 * 20 19 9 37 37 H 1.08002 * 120.00181 * 180.27699 * 21 20 19 38 38 H 1.08001 * 119.99716 * 179.83742 * 22 21 20 39 39 H 1.07998 * 119.99939 * 180.02562 * 23 22 21 40 40 H 1.08004 * 120.00165 * 359.97438 * 24 19 9 41 41 H 1.09004 * 109.47326 * 173.52760 * 26 25 3 42 42 H 1.08999 * 109.47534 * 293.52788 * 26 25 3 43 43 H 1.08998 * 109.47332 * 53.53153 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6124 1.9790 -0.8469 5 6 3.5658 1.4440 -0.1129 6 7 4.0542 2.8251 -0.1123 7 6 5.3759 3.0727 -0.2031 8 8 6.1610 2.1519 -0.2857 9 6 5.8783 4.4934 -0.2019 10 1 5.4511 5.0307 -1.0486 11 6 5.4685 5.1700 1.0809 12 1 5.3123 4.5840 1.9745 13 6 5.2931 6.5372 1.1136 14 7 5.4935 7.2521 0.0280 15 14 4.7708 7.3741 2.6998 16 1 3.2884 7.4319 2.7641 17 1 5.2869 6.6032 3.8594 18 1 5.3221 8.7526 2.7370 19 6 7.3812 4.4948 -0.3132 20 6 8.1510 3.9866 0.7162 21 6 9.5295 3.9840 0.6122 22 6 10.1383 4.4979 -0.5175 23 6 9.3686 5.0109 -1.5447 24 6 7.9901 5.0096 -1.4425 25 8 1.6518 2.0849 1.2160 26 6 0.5376 2.9687 1.0764 27 1 -0.3633 -1.0237 -0.0908 28 1 -0.3634 0.4332 0.9319 29 1 -0.3633 0.5904 -0.8412 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 3.8619 0.9539 -1.0405 33 1 3.9934 0.9073 0.7340 34 1 3.4264 3.5616 -0.0459 35 1 5.7949 6.8217 -0.7874 36 1 7.6755 3.5889 1.6006 37 1 10.1309 3.5828 1.4146 38 1 11.2154 4.4982 -0.5976 39 1 9.8443 5.4120 -2.4274 40 1 7.3887 5.4103 -2.2451 41 1 0.2328 3.3272 2.0596 42 1 0.8219 3.8162 0.4528 43 1 -0.2919 2.4368 0.6105 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001527479346.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:19 Heat of formation + Delta-G solvation = -78.858814 kcal Electronic energy + Delta-G solvation = -23600.521358 eV Core-core repulsion = 20223.945823 eV Total energy + Delta-G solvation = -3376.575535 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.40053 -38.56840 -37.58874 -34.18496 -33.93882 -33.04199 -30.85740 -30.00869 -29.12636 -27.15158 -26.00005 -23.86371 -23.10512 -21.62200 -21.25082 -20.79876 -19.39564 -17.35992 -16.91624 -16.35056 -15.82839 -15.53968 -15.20065 -14.57894 -14.44241 -14.02293 -13.85318 -13.83961 -13.68952 -13.18168 -12.99217 -12.66621 -12.45576 -12.28340 -12.19011 -11.99930 -11.76466 -11.51989 -11.33727 -11.11674 -10.93200 -10.83115 -10.70709 -10.29223 -10.19838 -10.13302 -9.53026 -8.94768 -8.80147 -8.57139 -8.36016 -8.01105 -7.64282 -6.54642 -4.29570 2.29845 2.34722 3.34771 3.40281 3.56092 3.63623 3.78851 3.94934 4.41554 4.74143 4.78689 4.91226 4.93854 5.18372 5.20069 5.26988 5.44102 5.49888 5.61461 5.67085 5.71746 5.72727 5.78166 5.80367 5.84623 5.94398 5.99183 6.10208 6.11851 6.28931 6.42180 6.48658 6.64441 6.89251 6.99181 7.15375 7.23890 7.30273 7.37332 7.61382 7.84697 7.97524 8.23643 8.33643 8.63683 9.18013 9.42143 10.84025 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013716 B = 0.005283 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.849923 B = 5298.274412 C = 6787.926560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.139 4.139 3 C 0.078 3.922 4 H 0.067 0.933 5 C 0.120 3.880 6 N -0.724 5.724 7 C 0.532 3.468 8 O -0.567 6.567 9 C 0.043 3.957 10 H 0.064 0.936 11 C -0.589 4.589 12 H 0.058 0.942 13 C 0.031 3.969 14 N -0.897 5.897 15 Si 1.071 2.929 16 H -0.286 1.286 17 H -0.286 1.286 18 H -0.284 1.284 19 C -0.019 4.019 20 C -0.078 4.078 21 C -0.133 4.133 22 C -0.146 4.146 23 C -0.129 4.129 24 C -0.128 4.128 25 O -0.374 6.374 26 C 0.026 3.974 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.404 0.596 35 H 0.272 0.728 36 H 0.112 0.888 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.084 0.916 42 H 0.044 0.956 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.333 -8.464 -1.521 11.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.177 4.177 3 C 0.020 3.980 4 H 0.085 0.915 5 C -0.005 4.005 6 N -0.376 5.376 7 C 0.322 3.678 8 O -0.446 6.446 9 C 0.021 3.979 10 H 0.082 0.918 11 C -0.626 4.626 12 H 0.077 0.923 13 C -0.176 4.176 14 N -0.531 5.531 15 Si 0.899 3.101 16 H -0.212 1.212 17 H -0.212 1.212 18 H -0.209 1.209 19 C -0.020 4.020 20 C -0.096 4.096 21 C -0.151 4.151 22 C -0.165 4.165 23 C -0.147 4.147 24 C -0.146 4.146 25 O -0.293 6.293 26 C -0.070 4.070 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.239 0.761 35 H 0.084 0.916 36 H 0.130 0.870 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.103 0.897 42 H 0.063 0.937 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.064 -7.680 -0.757 10.462 hybrid contribution -0.049 -1.010 -0.815 1.298 sum -7.113 -8.689 -1.572 11.339 Atomic orbital electron populations 1.21803 0.95579 1.01685 1.01881 1.21909 0.96405 0.96289 1.03113 1.22438 0.94366 0.93479 0.87739 0.91537 1.21395 0.91591 0.85536 1.01950 1.45762 1.08342 1.07282 1.76233 1.21282 0.81134 0.92418 0.72997 1.90584 1.55590 1.47443 1.50944 1.18158 0.89262 0.89587 1.00867 0.91800 1.21597 1.51837 0.94570 0.94623 0.92327 1.25854 0.94023 0.94245 1.03436 1.70782 1.41319 1.39194 1.01824 0.83496 0.76512 0.75955 0.74145 1.21239 1.21234 1.20922 1.20105 0.96646 0.93218 0.91989 1.20805 0.92674 0.97772 0.98356 1.20990 0.94990 1.01339 0.97769 1.20819 0.98556 1.02058 0.95027 1.20878 0.94016 1.01292 0.98546 1.20965 0.94393 1.01445 0.97796 1.87993 1.49609 1.60364 1.31287 1.22918 0.88516 0.92829 1.02775 0.92592 0.92184 0.92961 0.90834 0.90741 0.91200 0.91440 0.76089 0.91618 0.86969 0.87398 0.87524 0.87417 0.87345 0.89702 0.93690 0.94050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.72 37.16 0.32 -1.01 16 2 C -0.14 -1.43 5.64 -26.73 -0.15 -1.58 16 3 C 0.08 0.99 2.36 -26.73 -0.06 0.92 16 4 H 0.07 0.77 7.68 -51.93 -0.40 0.37 16 5 C 0.12 1.90 5.37 -4.04 -0.02 1.88 16 6 N -0.72 -13.82 5.35 -60.29 -0.32 -14.14 16 7 C 0.53 12.18 7.04 -10.99 -0.08 12.10 16 8 O -0.57 -14.15 15.43 5.55 0.09 -14.06 16 9 C 0.04 1.03 1.99 -94.08 -0.19 0.84 16 10 H 0.06 1.58 6.45 -51.93 -0.34 1.25 16 11 C -0.59 -15.17 7.46 -34.44 -0.26 -15.43 16 12 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 13 C 0.03 0.82 5.46 -17.82 -0.10 0.72 16 14 N -0.90 -24.94 13.62 55.43 0.75 -24.19 16 15 Si 1.07 23.91 29.90 -169.99 -5.08 18.83 16 16 H -0.29 -6.05 7.11 56.52 0.40 -5.65 16 17 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 19 C -0.02 -0.44 4.28 -104.63 -0.45 -0.89 16 20 C -0.08 -1.82 8.33 -39.58 -0.33 -2.15 16 21 C -0.13 -2.70 10.05 -39.58 -0.40 -3.09 16 22 C -0.15 -2.78 10.05 -39.59 -0.40 -3.18 16 23 C -0.13 -2.54 10.05 -39.59 -0.40 -2.93 16 24 C -0.13 -2.82 9.67 -39.58 -0.38 -3.20 16 25 O -0.37 -5.31 9.83 -35.23 -0.35 -5.66 16 26 C 0.03 0.30 10.35 101.05 1.05 1.34 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.55 6.88 -51.93 -0.36 0.19 16 29 H 0.05 0.42 8.13 -51.93 -0.42 0.00 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.40 7.49 8.23 -40.82 -0.34 7.16 16 35 H 0.27 7.50 6.66 -40.82 -0.27 7.23 16 36 H 0.11 2.69 7.88 -52.48 -0.41 2.27 16 37 H 0.11 1.87 8.06 -52.49 -0.42 1.45 16 38 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 39 H 0.11 1.78 8.06 -52.49 -0.42 1.35 16 40 H 0.11 2.25 7.96 -52.48 -0.42 1.84 16 41 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.04 0.38 6.24 -51.93 -0.32 0.06 16 LS Contribution 357.35 15.07 5.39 5.39 Total: -1.00 -30.79 357.35 -8.07 -38.86 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -6.71 Total: 10.64 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: -1.84 Total: -15.66 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.43 Total: -38.33 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.26 Total: -19.72 kcal Atomic # 14 Polarization: 23.91 SS G_CDS: -5.08 Total: 18.83 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.79 -8.07 -38.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527479346.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.997 kcal (2) G-P(sol) polarization free energy of solvation -30.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds