Wall clock time and date at job start Tue Mar 31 2020 06:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46953 * 2 1 4 4 H 1.08994 * 109.47300 * 304.49477 * 3 2 1 5 5 C 1.52999 * 109.46897 * 184.49059 * 3 2 1 6 6 N 1.46500 * 109.47212 * 180.02562 * 5 3 2 7 7 C 1.34777 * 120.00417 * 179.97438 * 6 5 3 8 8 O 1.21289 * 119.99644 * 0.02562 * 7 6 5 9 9 C 1.50691 * 120.00229 * 180.02562 * 7 6 5 10 10 H 1.09000 * 109.47738 * 300.00455 * 9 7 6 11 11 C 1.50704 * 109.47151 * 60.00362 * 9 7 6 12 12 H 1.08002 * 119.99733 * 27.26350 * 11 9 7 13 13 C 1.37880 * 119.99907 * 207.26116 * 11 9 7 14 14 N 1.31513 * 120.00272 * 359.47317 * 13 11 9 15 15 Si 1.86799 * 119.99714 * 179.47002 * 13 11 9 16 16 H 1.48499 * 109.47270 * 270.00250 * 15 13 11 17 17 H 1.48504 * 109.47180 * 30.00189 * 15 13 11 18 18 H 1.48506 * 109.46998 * 150.00209 * 15 13 11 19 19 C 1.50699 * 109.47127 * 180.02562 * 9 7 6 20 20 C 1.38228 * 120.00186 * 293.61086 * 19 9 7 21 21 C 1.38241 * 120.00140 * 179.78880 * 20 19 9 22 22 C 1.38237 * 119.99755 * 0.44007 * 21 20 19 23 23 C 1.38229 * 120.00049 * 359.81441 * 22 21 20 24 24 C 1.38235 * 120.00054 * 113.88403 * 19 9 7 25 25 O 1.42902 * 109.46875 * 64.49667 * 3 2 1 26 26 C 1.42896 * 113.99779 * 257.41411 * 25 3 2 27 27 H 1.09001 * 109.47120 * 174.92912 * 1 2 3 28 28 H 1.08999 * 109.47324 * 294.93357 * 1 2 3 29 29 H 1.09006 * 109.47054 * 54.93424 * 1 2 3 30 30 H 1.09004 * 109.46812 * 240.00301 * 2 1 3 31 31 H 1.08994 * 109.47120 * 120.00398 * 2 1 3 32 32 H 1.09002 * 109.46990 * 60.00529 * 5 3 2 33 33 H 1.09001 * 109.47613 * 300.00656 * 5 3 2 34 34 H 0.96997 * 120.00064 * 0.02562 * 6 5 3 35 35 H 0.97005 * 120.00147 * 357.84260 * 14 13 11 36 36 H 1.08005 * 120.00049 * 359.97438 * 20 19 9 37 37 H 1.08002 * 120.00181 * 180.27699 * 21 20 19 38 38 H 1.08001 * 119.99716 * 179.83742 * 22 21 20 39 39 H 1.07998 * 119.99939 * 180.02562 * 23 22 21 40 40 H 1.08004 * 120.00165 * 359.97438 * 24 19 9 41 41 H 1.09004 * 109.47326 * 173.52760 * 26 25 3 42 42 H 1.08999 * 109.47534 * 293.52788 * 26 25 3 43 43 H 1.08998 * 109.47332 * 53.53153 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6124 1.9790 -0.8469 5 6 3.5658 1.4440 -0.1129 6 7 4.0542 2.8251 -0.1123 7 6 5.3759 3.0727 -0.2031 8 8 6.1610 2.1519 -0.2857 9 6 5.8783 4.4934 -0.2019 10 1 5.4511 5.0307 -1.0486 11 6 5.4685 5.1700 1.0809 12 1 5.3123 4.5840 1.9745 13 6 5.2931 6.5372 1.1136 14 7 5.4935 7.2521 0.0280 15 14 4.7708 7.3741 2.6998 16 1 3.2884 7.4319 2.7641 17 1 5.2869 6.6032 3.8594 18 1 5.3221 8.7526 2.7370 19 6 7.3812 4.4948 -0.3132 20 6 8.1510 3.9866 0.7162 21 6 9.5295 3.9840 0.6122 22 6 10.1383 4.4979 -0.5175 23 6 9.3686 5.0109 -1.5447 24 6 7.9901 5.0096 -1.4425 25 8 1.6518 2.0849 1.2160 26 6 0.5376 2.9687 1.0764 27 1 -0.3633 -1.0237 -0.0908 28 1 -0.3634 0.4332 0.9319 29 1 -0.3633 0.5904 -0.8412 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 3.8619 0.9539 -1.0405 33 1 3.9934 0.9073 0.7340 34 1 3.4264 3.5616 -0.0459 35 1 5.7949 6.8217 -0.7874 36 1 7.6755 3.5889 1.6006 37 1 10.1309 3.5828 1.4146 38 1 11.2154 4.4982 -0.5976 39 1 9.8443 5.4120 -2.4274 40 1 7.3887 5.4103 -2.2451 41 1 0.2328 3.3272 2.0596 42 1 0.8219 3.8162 0.4528 43 1 -0.2919 2.4368 0.6105 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001527479346.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:18 Heat of formation + Delta-G solvation = -97.446044 kcal Electronic energy + Delta-G solvation = -23601.327361 eV Core-core repulsion = 20223.945823 eV Total energy + Delta-G solvation = -3377.381538 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.06456 -39.84443 -39.12665 -35.87989 -35.59165 -34.09670 -32.68940 -31.64694 -30.36297 -28.72286 -27.10743 -25.69351 -24.31980 -23.27635 -22.42106 -22.27762 -21.11283 -19.23065 -17.98450 -17.91101 -17.51526 -16.98299 -16.41362 -16.22812 -15.82868 -15.65868 -15.44964 -15.29107 -14.78224 -14.62484 -14.31934 -14.09627 -13.98590 -13.84043 -13.66375 -13.25238 -13.14248 -12.85426 -12.67602 -12.58483 -12.21844 -12.04478 -11.99484 -11.93835 -11.79147 -11.63999 -10.89877 -10.74123 -10.59272 -10.40357 -9.99324 -9.66401 -9.35181 -8.64241 -6.39004 0.64388 0.70061 1.53776 1.61461 1.79302 1.82521 2.41481 2.55248 2.78688 3.08349 3.20825 3.72084 3.95225 4.01707 4.09706 4.20825 4.27299 4.35053 4.36291 4.38413 4.45213 4.53731 4.57526 4.63424 4.66084 4.75590 4.82968 4.86260 4.89760 4.94432 5.08300 5.18072 5.24994 5.31130 5.37548 5.56391 5.68208 5.71918 5.73692 6.04209 6.14308 6.25700 6.30027 6.52629 6.65463 7.37558 7.41387 8.74822 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013716 B = 0.005283 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.849923 B = 5298.274412 C = 6787.926560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.135 4.135 3 C 0.084 3.916 4 H 0.081 0.919 5 C 0.117 3.883 6 N -0.713 5.713 7 C 0.528 3.472 8 O -0.592 6.592 9 C 0.043 3.957 10 H 0.050 0.950 11 C -0.585 4.585 12 H 0.042 0.958 13 C -0.008 4.008 14 N -0.920 5.920 15 Si 1.110 2.890 16 H -0.265 1.265 17 H -0.281 1.281 18 H -0.286 1.286 19 C -0.047 4.047 20 C -0.108 4.108 21 C -0.134 4.134 22 C -0.140 4.140 23 C -0.126 4.126 24 C -0.150 4.150 25 O -0.400 6.400 26 C 0.021 3.979 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.050 0.950 34 H 0.407 0.593 35 H 0.264 0.736 36 H 0.090 0.910 37 H 0.137 0.863 38 H 0.151 0.849 39 H 0.144 0.856 40 H 0.109 0.891 41 H 0.091 0.909 42 H 0.039 0.961 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.285 -8.771 -1.748 11.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.173 4.173 3 C 0.026 3.974 4 H 0.099 0.901 5 C -0.007 4.007 6 N -0.364 5.364 7 C 0.317 3.683 8 O -0.474 6.474 9 C 0.021 3.979 10 H 0.068 0.932 11 C -0.623 4.623 12 H 0.061 0.939 13 C -0.209 4.209 14 N -0.555 5.555 15 Si 0.932 3.068 16 H -0.190 1.190 17 H -0.207 1.207 18 H -0.212 1.212 19 C -0.048 4.048 20 C -0.126 4.126 21 C -0.152 4.152 22 C -0.158 4.158 23 C -0.144 4.144 24 C -0.168 4.168 25 O -0.320 6.320 26 C -0.075 4.075 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.069 0.931 34 H 0.242 0.758 35 H 0.074 0.926 36 H 0.109 0.891 37 H 0.155 0.845 38 H 0.169 0.831 39 H 0.162 0.838 40 H 0.128 0.872 41 H 0.109 0.891 42 H 0.058 0.942 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.058 -8.007 -0.990 10.720 hybrid contribution -0.006 -0.972 -0.776 1.244 sum -7.064 -8.979 -1.766 11.560 Atomic orbital electron populations 1.21778 0.94026 1.02780 1.02009 1.21891 0.97679 0.94347 1.03404 1.22452 0.91785 0.95297 0.87867 0.90121 1.21625 0.94142 0.83281 1.01627 1.45724 1.07133 1.08989 1.74531 1.21130 0.82226 0.91709 0.73222 1.90549 1.56508 1.47798 1.52505 1.18091 0.90211 0.90075 0.99494 0.93218 1.21620 1.51401 0.94626 0.94648 0.93931 1.26984 0.93693 0.95027 1.05203 1.70869 1.43153 1.39334 1.02153 0.83000 0.77516 0.74902 0.71346 1.18995 1.20675 1.21163 1.20157 0.96332 0.94939 0.93353 1.20812 0.94394 0.99538 0.97859 1.21360 0.93876 1.00648 0.99280 1.21321 1.00760 0.99991 0.93690 1.21329 0.92959 1.00117 0.99992 1.21166 0.96049 1.02056 0.97509 1.87955 1.50850 1.61005 1.32152 1.23071 0.88424 0.92570 1.03416 0.91201 0.92678 0.92037 0.89481 0.91575 0.90342 0.93137 0.75810 0.92558 0.89142 0.84493 0.83137 0.83817 0.87241 0.89096 0.94200 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 8.72 71.98 0.63 -1.63 16 2 C -0.14 -2.57 5.64 30.59 0.17 -2.40 16 3 C 0.08 2.05 2.36 30.59 0.07 2.13 16 4 H 0.08 1.74 7.68 -2.39 -0.02 1.72 16 5 C 0.12 3.75 5.37 86.38 0.46 4.21 16 6 N -0.71 -28.02 5.35 -463.06 -2.48 -30.50 16 7 C 0.53 25.13 7.04 87.65 0.62 25.74 16 8 O -0.59 -30.63 15.43 -3.06 -0.05 -30.68 16 9 C 0.04 2.15 1.99 -13.03 -0.03 2.12 16 10 H 0.05 2.60 6.45 -2.39 -0.02 2.59 16 11 C -0.59 -31.18 7.46 25.60 0.19 -30.99 16 12 H 0.04 2.35 7.81 -2.91 -0.02 2.33 16 13 C -0.01 -0.41 5.46 84.66 0.46 0.05 16 14 N -0.92 -52.15 13.62 21.45 0.29 -51.86 16 15 Si 1.11 48.35 29.90 68.60 2.05 50.40 16 16 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 17 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 18 H -0.29 -12.52 7.11 99.48 0.71 -11.82 16 19 C -0.05 -2.31 4.28 -19.87 -0.09 -2.39 16 20 C -0.11 -5.13 8.33 22.27 0.19 -4.95 16 21 C -0.13 -5.25 10.05 22.27 0.22 -5.03 16 22 C -0.14 -4.89 10.05 22.27 0.22 -4.66 16 23 C -0.13 -4.68 10.05 22.27 0.22 -4.46 16 24 C -0.15 -6.65 9.67 22.27 0.22 -6.43 16 25 O -0.40 -11.17 9.83 -148.98 -1.46 -12.63 16 26 C 0.02 0.45 10.35 113.37 1.17 1.63 16 27 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 28 H 0.05 0.90 6.88 -2.39 -0.02 0.88 16 29 H 0.06 0.83 8.13 -2.38 -0.02 0.81 16 30 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 34 H 0.41 15.49 8.23 -92.71 -0.76 14.73 16 35 H 0.26 15.02 6.66 -92.70 -0.62 14.40 16 36 H 0.09 4.56 7.88 -2.91 -0.02 4.53 16 37 H 0.14 4.45 8.06 -2.91 -0.02 4.42 16 38 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 39 H 0.14 4.23 8.06 -2.91 -0.02 4.20 16 40 H 0.11 4.67 7.96 -2.91 -0.02 4.65 16 41 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.06 1.07 6.24 -2.39 -0.01 1.06 16 Total: -1.00 -68.01 357.35 3.48 -64.53 By element: Atomic # 1 Polarization: 37.41 SS G_CDS: 0.38 Total: 37.79 kcal Atomic # 6 Polarization: -31.80 SS G_CDS: 4.74 Total: -27.06 kcal Atomic # 7 Polarization: -80.17 SS G_CDS: -2.18 Total: -82.35 kcal Atomic # 8 Polarization: -41.80 SS G_CDS: -1.51 Total: -43.31 kcal Atomic # 14 Polarization: 48.35 SS G_CDS: 2.05 Total: 50.40 kcal Total: -68.01 3.48 -64.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527479346.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.913 kcal (2) G-P(sol) polarization free energy of solvation -68.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds