Wall clock time and date at job start Tue Mar 31 2020 06:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47194 * 2 1 4 4 H 1.08998 * 109.47663 * 55.74931 * 3 2 1 5 5 C 1.53005 * 109.46771 * 175.74794 * 3 2 1 6 6 N 1.46504 * 109.47092 * 185.00002 * 5 3 2 7 7 C 1.34773 * 120.00314 * 180.02562 * 6 5 3 8 8 O 1.21286 * 119.99847 * 359.97438 * 7 6 5 9 9 C 1.50692 * 120.00365 * 180.02562 * 7 6 5 10 10 H 1.09007 * 109.47289 * 59.99492 * 9 7 6 11 11 C 1.50699 * 109.47333 * 299.99942 * 9 7 6 12 12 H 1.07997 * 119.99837 * 335.07443 * 11 9 7 13 13 C 1.37871 * 120.00364 * 155.06939 * 11 9 7 14 14 N 1.31521 * 120.00202 * 185.19234 * 13 11 9 15 15 Si 1.86807 * 120.00221 * 5.19341 * 13 11 9 16 16 H 1.48495 * 109.46847 * 93.82626 * 15 13 11 17 17 H 1.48497 * 109.47133 * 213.82934 * 15 13 11 18 18 H 1.48500 * 109.46585 * 333.82940 * 15 13 11 19 19 C 1.50699 * 109.47617 * 179.97438 * 9 7 6 20 20 C 1.38242 * 119.99722 * 66.16230 * 19 9 7 21 21 C 1.38236 * 119.99714 * 179.81318 * 20 19 9 22 22 C 1.38229 * 120.00359 * 0.39786 * 21 20 19 23 23 C 1.38236 * 119.99917 * 359.85545 * 22 21 20 24 24 C 1.38236 * 120.00149 * 359.95777 * 23 22 21 25 25 O 1.42900 * 109.47369 * 295.74697 * 3 2 1 26 26 C 1.42893 * 114.00010 * 110.94464 * 25 3 2 27 27 H 1.08991 * 109.47502 * 181.87015 * 1 2 3 28 28 H 1.09004 * 109.47350 * 61.86493 * 1 2 3 29 29 H 1.09005 * 109.46817 * 301.87283 * 1 2 3 30 30 H 1.08993 * 109.47049 * 120.00288 * 2 1 3 31 31 H 1.08995 * 109.46979 * 240.00112 * 2 1 3 32 32 H 1.09001 * 109.46891 * 304.99717 * 5 3 2 33 33 H 1.08996 * 109.47527 * 65.00312 * 5 3 2 34 34 H 0.96999 * 119.99640 * 0.02562 * 6 5 3 35 35 H 0.96995 * 120.00007 * 180.02562 * 14 13 11 36 36 H 1.07995 * 119.99689 * 0.02562 * 20 19 9 37 37 H 1.08006 * 119.99315 * 180.22802 * 21 20 19 38 38 H 1.07994 * 120.00436 * 179.83407 * 22 21 20 39 39 H 1.07997 * 120.00211 * 179.97438 * 23 22 21 40 40 H 1.08003 * 120.00448 * 180.02562 * 24 23 22 41 41 H 1.08998 * 109.47238 * 295.67671 * 26 25 3 42 42 H 1.08996 * 109.47592 * 55.67714 * 26 25 3 43 43 H 1.09003 * 109.47133 * 175.67682 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6159 1.9779 0.8494 5 6 3.5663 1.4437 0.1070 6 7 4.0463 2.8226 0.2271 7 6 5.3669 3.0695 0.3346 8 8 6.1579 2.1501 0.3323 9 6 5.8606 4.4879 0.4588 10 1 5.4338 4.9443 1.3520 11 6 5.4410 5.2741 -0.7564 12 1 5.2477 4.7647 -1.6889 13 6 5.3038 6.6437 -0.6778 14 7 4.8399 7.3183 -1.7072 15 14 5.7767 7.5414 0.8906 16 1 7.1789 8.0186 0.7842 17 1 4.8723 8.7025 1.0883 18 1 5.6549 6.6166 2.0461 19 6 7.3639 4.4892 0.5640 20 6 8.1322 4.0758 -0.5083 21 6 9.5112 4.0807 -0.4131 22 6 10.1219 4.4911 0.7571 23 6 9.3535 4.8994 1.8312 24 6 7.9745 4.8983 1.7348 25 8 1.6470 2.0867 -1.2135 26 6 0.6623 3.1070 -1.0373 27 1 -0.3634 -1.0270 0.0335 28 1 -0.3634 0.4846 -0.9063 29 1 -0.3633 0.5427 0.8728 30 1 1.8933 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.8693 0.8755 0.9865 33 1 3.9935 0.9868 -0.7857 34 1 3.4137 3.5579 0.2294 35 1 4.7437 8.2819 -1.6520 36 1 7.6550 3.7524 -1.4215 37 1 10.1115 3.7612 -1.2523 38 1 11.1992 4.4923 0.8324 39 1 9.8306 5.2197 2.7457 40 1 7.3742 5.2177 2.5739 41 1 -0.2618 2.6606 -0.6701 42 1 1.0234 3.8399 -0.3159 43 1 0.4739 3.5989 -1.9917 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001527479347.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:22 Heat of formation + Delta-G solvation = -71.042314 kcal Electronic energy + Delta-G solvation = -23628.744159 eV Core-core repulsion = 20252.507572 eV Total energy + Delta-G solvation = -3376.236587 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.43807 -38.55784 -37.62880 -34.17680 -33.62253 -33.03883 -31.46657 -30.10073 -29.07141 -27.54398 -26.08551 -23.91808 -22.95477 -21.82130 -21.21002 -20.86939 -19.18548 -17.10782 -16.86664 -16.48715 -16.04604 -15.54369 -15.23328 -14.55142 -14.48036 -14.31372 -13.93736 -13.88404 -13.54936 -13.15806 -12.96973 -12.70498 -12.54393 -12.37368 -12.17274 -12.01759 -11.79953 -11.64684 -11.31503 -11.11669 -11.08492 -10.95860 -10.69288 -10.45503 -10.24851 -9.83425 -9.52058 -9.47552 -8.88631 -8.68260 -8.37778 -8.09921 -7.77627 -6.26803 -4.30864 2.18178 2.24707 3.19327 3.25617 3.31429 3.60872 3.83295 3.93673 4.26027 4.66234 4.80493 4.94315 4.98281 5.04569 5.22027 5.35584 5.49608 5.53625 5.58244 5.63996 5.66019 5.75068 5.81110 5.81740 5.87235 5.97086 5.99372 6.01826 6.14165 6.25851 6.33388 6.36511 6.52959 6.78141 6.89359 7.13185 7.20067 7.28894 7.29478 7.32620 7.63983 7.83664 8.22676 8.32029 8.74459 9.14267 9.31568 10.83840 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016041 B = 0.005093 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.089290 B = 5496.031232 C = 6621.416899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.135 4.135 3 C 0.077 3.923 4 H 0.067 0.933 5 C 0.116 3.884 6 N -0.724 5.724 7 C 0.538 3.462 8 O -0.562 6.562 9 C 0.020 3.980 10 H 0.070 0.930 11 C -0.510 4.510 12 H 0.083 0.917 13 C 0.086 3.914 14 N -0.883 5.883 15 Si 0.864 3.136 16 H -0.270 1.270 17 H -0.287 1.287 18 H -0.258 1.258 19 C -0.030 4.030 20 C -0.071 4.071 21 C -0.130 4.130 22 C -0.143 4.143 23 C -0.130 4.130 24 C -0.139 4.139 25 O -0.374 6.374 26 C 0.030 3.970 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.404 0.596 35 H 0.267 0.733 36 H 0.118 0.882 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.037 0.963 42 H 0.045 0.955 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.538 -8.331 5.816 11.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.173 4.173 3 C 0.019 3.981 4 H 0.085 0.915 5 C -0.009 4.009 6 N -0.377 5.377 7 C 0.326 3.674 8 O -0.441 6.441 9 C -0.001 4.001 10 H 0.088 0.912 11 C -0.548 4.548 12 H 0.101 0.899 13 C -0.119 4.119 14 N -0.519 5.519 15 Si 0.692 3.308 16 H -0.195 1.195 17 H -0.213 1.213 18 H -0.183 1.183 19 C -0.031 4.031 20 C -0.089 4.089 21 C -0.148 4.148 22 C -0.161 4.161 23 C -0.148 4.148 24 C -0.157 4.157 25 O -0.292 6.292 26 C -0.067 4.067 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.239 0.761 35 H 0.077 0.923 36 H 0.136 0.864 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.055 0.945 42 H 0.064 0.936 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.957 -8.848 5.549 11.560 hybrid contribution -0.176 1.193 0.907 1.509 sum -5.133 -7.655 6.455 11.253 Atomic orbital electron populations 1.21759 0.95529 1.01637 1.01910 1.21836 0.96430 0.95996 1.03051 1.22444 0.94066 0.93729 0.87858 0.91466 1.21486 0.92111 0.85215 1.02043 1.45777 1.08279 1.07676 1.75926 1.20976 0.81224 0.91767 0.73391 1.90594 1.55091 1.47196 1.51217 1.18582 0.89597 0.91050 1.00901 0.91215 1.20541 1.47041 0.91676 0.95511 0.89918 1.24934 0.93500 0.97224 0.96197 1.69880 1.43658 1.08012 1.30368 0.87039 0.79508 0.79799 0.84498 1.19485 1.21311 1.18319 1.20113 0.96561 0.94120 0.92259 1.20870 0.92680 0.96845 0.98482 1.21042 0.95029 1.01280 0.97459 1.20861 0.98695 1.02370 0.94181 1.20883 0.93907 1.01731 0.98302 1.21033 0.94608 1.02561 0.97518 1.87986 1.59272 1.51987 1.29992 1.22882 0.90618 0.90282 1.02886 0.92653 0.92162 0.93045 0.90842 0.90750 0.91189 0.91224 0.76137 0.92254 0.86390 0.87102 0.87336 0.87301 0.87271 0.94471 0.93614 0.89518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.28 37.16 0.34 -1.00 16 2 C -0.13 -1.39 5.65 -26.73 -0.15 -1.54 16 3 C 0.08 0.97 2.28 -26.73 -0.06 0.91 16 4 H 0.07 0.76 7.59 -51.93 -0.39 0.37 16 5 C 0.12 1.80 5.34 -4.04 -0.02 1.78 16 6 N -0.72 -13.41 5.40 -60.29 -0.33 -13.74 16 7 C 0.54 11.84 7.04 -10.99 -0.08 11.77 16 8 O -0.56 -13.54 15.42 5.55 0.09 -13.45 16 9 C 0.02 0.46 1.88 -94.08 -0.18 0.29 16 10 H 0.07 1.56 5.39 -51.93 -0.28 1.28 16 11 C -0.51 -13.22 8.04 -34.44 -0.28 -13.50 16 12 H 0.08 2.38 8.05 -52.49 -0.42 1.96 16 13 C 0.09 2.30 5.47 -17.82 -0.10 2.20 16 14 N -0.88 -25.11 13.96 55.43 0.77 -24.33 16 15 Si 0.86 20.24 26.03 -169.99 -4.43 15.82 16 16 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.26 -5.60 5.47 56.52 0.31 -5.29 16 19 C -0.03 -0.67 3.56 -104.62 -0.37 -1.05 16 20 C -0.07 -1.59 8.32 -39.58 -0.33 -1.92 16 21 C -0.13 -2.53 10.05 -39.59 -0.40 -2.93 16 22 C -0.14 -2.58 10.05 -39.59 -0.40 -2.97 16 23 C -0.13 -2.41 10.05 -39.58 -0.40 -2.81 16 24 C -0.14 -2.90 8.52 -39.58 -0.34 -3.24 16 25 O -0.37 -5.41 9.86 -35.23 -0.35 -5.76 16 26 C 0.03 0.36 10.47 101.05 1.06 1.42 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.58 7.08 -51.93 -0.37 0.21 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.40 7.19 8.36 -40.82 -0.34 6.85 16 35 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.12 2.75 7.89 -52.49 -0.41 2.34 16 37 H 0.11 1.84 8.06 -52.48 -0.42 1.42 16 38 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 39 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.11 2.12 7.48 -52.48 -0.39 1.73 16 41 H 0.04 0.36 7.10 -51.93 -0.37 -0.01 16 42 H 0.05 0.55 8.09 -51.93 -0.42 0.13 16 43 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 352.84 15.07 5.32 5.32 Total: -1.00 -30.81 352.84 -7.47 -38.28 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -6.86 Total: 10.47 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: -1.69 Total: -12.60 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.45 Total: -38.07 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.26 Total: -19.21 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.43 Total: 15.82 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.81 -7.47 -38.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527479347.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.764 kcal (2) G-P(sol) polarization free energy of solvation -30.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds