Wall clock time and date at job start Tue Mar 31 2020 06:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47194 * 2 1 4 4 H 1.08998 * 109.47663 * 55.74931 * 3 2 1 5 5 C 1.53005 * 109.46771 * 175.74794 * 3 2 1 6 6 N 1.46504 * 109.47092 * 185.00002 * 5 3 2 7 7 C 1.34773 * 120.00314 * 180.02562 * 6 5 3 8 8 O 1.21286 * 119.99847 * 359.97438 * 7 6 5 9 9 C 1.50692 * 120.00365 * 180.02562 * 7 6 5 10 10 H 1.09007 * 109.47289 * 59.99492 * 9 7 6 11 11 C 1.50699 * 109.47333 * 299.99942 * 9 7 6 12 12 H 1.07997 * 119.99837 * 335.07443 * 11 9 7 13 13 C 1.37871 * 120.00364 * 155.06939 * 11 9 7 14 14 N 1.31521 * 120.00202 * 185.19234 * 13 11 9 15 15 Si 1.86807 * 120.00221 * 5.19341 * 13 11 9 16 16 H 1.48495 * 109.46847 * 93.82626 * 15 13 11 17 17 H 1.48497 * 109.47133 * 213.82934 * 15 13 11 18 18 H 1.48500 * 109.46585 * 333.82940 * 15 13 11 19 19 C 1.50699 * 109.47617 * 179.97438 * 9 7 6 20 20 C 1.38242 * 119.99722 * 66.16230 * 19 9 7 21 21 C 1.38236 * 119.99714 * 179.81318 * 20 19 9 22 22 C 1.38229 * 120.00359 * 0.39786 * 21 20 19 23 23 C 1.38236 * 119.99917 * 359.85545 * 22 21 20 24 24 C 1.38236 * 120.00149 * 359.95777 * 23 22 21 25 25 O 1.42900 * 109.47369 * 295.74697 * 3 2 1 26 26 C 1.42893 * 114.00010 * 110.94464 * 25 3 2 27 27 H 1.08991 * 109.47502 * 181.87015 * 1 2 3 28 28 H 1.09004 * 109.47350 * 61.86493 * 1 2 3 29 29 H 1.09005 * 109.46817 * 301.87283 * 1 2 3 30 30 H 1.08993 * 109.47049 * 120.00288 * 2 1 3 31 31 H 1.08995 * 109.46979 * 240.00112 * 2 1 3 32 32 H 1.09001 * 109.46891 * 304.99717 * 5 3 2 33 33 H 1.08996 * 109.47527 * 65.00312 * 5 3 2 34 34 H 0.96999 * 119.99640 * 0.02562 * 6 5 3 35 35 H 0.96995 * 120.00007 * 180.02562 * 14 13 11 36 36 H 1.07995 * 119.99689 * 0.02562 * 20 19 9 37 37 H 1.08006 * 119.99315 * 180.22802 * 21 20 19 38 38 H 1.07994 * 120.00436 * 179.83407 * 22 21 20 39 39 H 1.07997 * 120.00211 * 179.97438 * 23 22 21 40 40 H 1.08003 * 120.00448 * 180.02562 * 24 23 22 41 41 H 1.08998 * 109.47238 * 295.67671 * 26 25 3 42 42 H 1.08996 * 109.47592 * 55.67714 * 26 25 3 43 43 H 1.09003 * 109.47133 * 175.67682 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6159 1.9779 0.8494 5 6 3.5663 1.4437 0.1070 6 7 4.0463 2.8226 0.2271 7 6 5.3669 3.0695 0.3346 8 8 6.1579 2.1501 0.3323 9 6 5.8606 4.4879 0.4588 10 1 5.4338 4.9443 1.3520 11 6 5.4410 5.2741 -0.7564 12 1 5.2477 4.7647 -1.6889 13 6 5.3038 6.6437 -0.6778 14 7 4.8399 7.3183 -1.7072 15 14 5.7767 7.5414 0.8906 16 1 7.1789 8.0186 0.7842 17 1 4.8723 8.7025 1.0883 18 1 5.6549 6.6166 2.0461 19 6 7.3639 4.4892 0.5640 20 6 8.1322 4.0758 -0.5083 21 6 9.5112 4.0807 -0.4131 22 6 10.1219 4.4911 0.7571 23 6 9.3535 4.8994 1.8312 24 6 7.9745 4.8983 1.7348 25 8 1.6470 2.0867 -1.2135 26 6 0.6623 3.1070 -1.0373 27 1 -0.3634 -1.0270 0.0335 28 1 -0.3634 0.4846 -0.9063 29 1 -0.3633 0.5427 0.8728 30 1 1.8933 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.8693 0.8755 0.9865 33 1 3.9935 0.9868 -0.7857 34 1 3.4137 3.5579 0.2294 35 1 4.7437 8.2819 -1.6520 36 1 7.6550 3.7524 -1.4215 37 1 10.1115 3.7612 -1.2523 38 1 11.1992 4.4923 0.8324 39 1 9.8306 5.2197 2.7457 40 1 7.3742 5.2177 2.5739 41 1 -0.2618 2.6606 -0.6701 42 1 1.0234 3.8399 -0.3159 43 1 0.4739 3.5989 -1.9917 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001527479347.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:21 Heat of formation + Delta-G solvation = -91.071638 kcal Electronic energy + Delta-G solvation = -23629.612696 eV Core-core repulsion = 20252.507572 eV Total energy + Delta-G solvation = -3377.105123 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.05260 -39.82024 -39.09118 -35.57902 -35.50300 -34.10934 -33.32503 -31.63811 -30.33274 -29.07955 -27.20314 -25.60399 -24.24060 -23.37225 -22.41324 -22.23149 -20.81945 -19.08535 -18.13293 -17.87580 -17.65178 -16.94868 -16.47816 -16.23382 -15.94164 -15.74693 -15.41653 -15.16908 -14.83293 -14.59683 -14.31986 -14.15028 -14.05785 -13.85483 -13.62193 -13.42983 -13.09644 -12.96337 -12.73978 -12.56052 -12.24433 -12.06433 -12.01607 -11.98358 -11.62063 -11.57915 -11.41124 -10.87419 -10.67804 -10.38085 -9.95399 -9.64937 -9.37594 -8.34030 -6.42030 0.63069 0.69421 1.32709 1.39671 1.43906 1.85127 2.30511 2.44715 2.82214 2.97626 3.14451 3.75919 3.99343 4.04854 4.10867 4.20752 4.28518 4.34183 4.39000 4.40415 4.46638 4.56233 4.57949 4.64355 4.66864 4.80349 4.81590 4.88569 4.91289 4.98073 5.10973 5.19659 5.21402 5.31467 5.39793 5.41601 5.61774 5.68890 5.73462 5.95204 6.20456 6.29158 6.29605 6.60544 6.67192 7.23041 7.43493 8.80236 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016041 B = 0.005093 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.089290 B = 5496.031232 C = 6621.416899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.131 4.131 3 C 0.082 3.918 4 H 0.085 0.915 5 C 0.113 3.887 6 N -0.716 5.716 7 C 0.532 3.468 8 O -0.587 6.587 9 C 0.023 3.977 10 H 0.080 0.920 11 C -0.499 4.499 12 H 0.036 0.964 13 C 0.038 3.962 14 N -0.930 5.930 15 Si 0.921 3.079 16 H -0.276 1.276 17 H -0.282 1.282 18 H -0.229 1.229 19 C -0.057 4.057 20 C -0.103 4.103 21 C -0.134 4.134 22 C -0.136 4.136 23 C -0.126 4.126 24 C -0.154 4.154 25 O -0.401 6.401 26 C 0.026 3.974 27 H 0.068 0.932 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.047 0.953 34 H 0.407 0.593 35 H 0.269 0.731 36 H 0.087 0.913 37 H 0.134 0.866 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.123 0.877 41 H 0.064 0.936 42 H 0.042 0.958 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.845 -8.503 8.717 13.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.169 4.169 3 C 0.024 3.976 4 H 0.103 0.897 5 C -0.010 4.010 6 N -0.366 5.366 7 C 0.321 3.679 8 O -0.468 6.468 9 C 0.002 3.998 10 H 0.097 0.903 11 C -0.537 4.537 12 H 0.054 0.946 13 C -0.162 4.162 14 N -0.568 5.568 15 Si 0.745 3.255 16 H -0.202 1.202 17 H -0.208 1.208 18 H -0.152 1.152 19 C -0.058 4.058 20 C -0.122 4.122 21 C -0.152 4.152 22 C -0.154 4.154 23 C -0.143 4.143 24 C -0.172 4.172 25 O -0.321 6.321 26 C -0.070 4.070 27 H 0.087 0.913 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.066 0.934 34 H 0.242 0.758 35 H 0.079 0.921 36 H 0.105 0.895 37 H 0.152 0.848 38 H 0.169 0.831 39 H 0.167 0.833 40 H 0.141 0.859 41 H 0.082 0.918 42 H 0.061 0.939 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.299 -9.043 8.458 13.107 hybrid contribution -0.338 1.163 -0.081 1.214 sum -4.637 -7.880 8.377 12.400 Atomic orbital electron populations 1.21734 0.94138 1.02658 1.01953 1.21828 0.97565 0.94118 1.03426 1.22508 0.91724 0.95482 0.87886 0.89680 1.21703 0.94431 0.83327 1.01571 1.45774 1.07254 1.09258 1.74338 1.20910 0.82181 0.91278 0.73579 1.90563 1.55947 1.47632 1.52675 1.18510 0.90699 0.91164 0.99472 0.90261 1.20431 1.46434 0.91870 0.94967 0.94606 1.25646 0.93401 0.97868 0.99317 1.70006 1.45637 1.08380 1.32775 0.86132 0.78574 0.79047 0.81761 1.20152 1.20812 1.15184 1.20113 0.95989 0.96077 0.93622 1.20838 0.94456 0.99106 0.97779 1.21363 0.93873 1.00731 0.99260 1.21356 1.00885 1.00219 0.92940 1.21384 0.93020 1.00023 0.99910 1.21295 0.96187 1.02682 0.97033 1.87952 1.60161 1.52687 1.31282 1.22998 0.91222 0.89989 1.02834 0.91265 0.93051 0.91956 0.89151 0.91739 0.89837 0.93440 0.75788 0.92141 0.89453 0.84825 0.83142 0.83275 0.85860 0.91770 0.93897 0.89924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.28 71.98 0.67 -1.66 16 2 C -0.13 -2.51 5.65 30.59 0.17 -2.34 16 3 C 0.08 2.00 2.28 30.59 0.07 2.07 16 4 H 0.09 1.78 7.59 -2.39 -0.02 1.76 16 5 C 0.11 3.56 5.34 86.38 0.46 4.02 16 6 N -0.72 -27.13 5.40 -463.06 -2.50 -29.63 16 7 C 0.53 24.11 7.04 87.65 0.62 24.72 16 8 O -0.59 -29.10 15.42 -3.05 -0.05 -29.15 16 9 C 0.02 1.07 1.88 -13.04 -0.02 1.05 16 10 H 0.08 3.48 5.39 -2.38 -0.01 3.47 16 11 C -0.50 -27.02 8.04 25.60 0.21 -26.82 16 12 H 0.04 2.22 8.05 -2.91 -0.02 2.20 16 13 C 0.04 2.07 5.47 84.65 0.46 2.53 16 14 N -0.93 -54.76 13.96 21.45 0.30 -54.46 16 15 Si 0.92 41.36 26.03 68.60 1.79 43.15 16 16 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 17 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 18 H -0.23 -9.07 5.47 99.48 0.54 -8.52 16 19 C -0.06 -2.60 3.56 -19.86 -0.07 -2.67 16 20 C -0.10 -4.75 8.32 22.27 0.19 -4.56 16 21 C -0.13 -5.05 10.05 22.27 0.22 -4.83 16 22 C -0.14 -4.39 10.05 22.27 0.22 -4.17 16 23 C -0.13 -4.15 10.05 22.27 0.22 -3.93 16 24 C -0.15 -6.04 8.52 22.27 0.19 -5.85 16 25 O -0.40 -11.72 9.86 -148.98 -1.47 -13.19 16 26 C 0.03 0.61 10.47 113.37 1.19 1.79 16 27 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.05 0.90 7.08 -2.38 -0.02 0.89 16 29 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.41 14.81 8.36 -92.71 -0.77 14.03 16 35 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 36 H 0.09 4.39 7.89 -2.91 -0.02 4.37 16 37 H 0.13 4.25 8.06 -2.91 -0.02 4.22 16 38 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 39 H 0.15 3.71 8.06 -2.91 -0.02 3.68 16 40 H 0.12 4.38 7.48 -2.91 -0.02 4.36 16 41 H 0.06 1.15 7.10 -2.39 -0.02 1.14 16 42 H 0.04 1.02 8.09 -2.39 -0.02 1.00 16 43 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -69.67 352.84 2.92 -66.76 By element: Atomic # 1 Polarization: 37.09 SS G_CDS: 0.05 Total: 37.15 kcal Atomic # 6 Polarization: -25.42 SS G_CDS: 4.79 Total: -20.63 kcal Atomic # 7 Polarization: -81.89 SS G_CDS: -2.20 Total: -84.09 kcal Atomic # 8 Polarization: -40.82 SS G_CDS: -1.52 Total: -42.34 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 1.79 Total: 43.15 kcal Total: -69.67 2.92 -66.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527479347.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.315 kcal (2) G-P(sol) polarization free energy of solvation -69.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds