Wall clock time and date at job start Tue Mar 31 2020 06:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46842 * 2 1 4 4 H 1.08996 * 109.47576 * 305.81723 * 3 2 1 5 5 C 1.53005 * 109.47292 * 185.81136 * 3 2 1 6 6 N 1.46496 * 109.47457 * 180.02562 * 5 3 2 7 7 C 1.34776 * 120.00211 * 179.97438 * 6 5 3 8 8 O 1.21280 * 119.99825 * 0.02562 * 7 6 5 9 9 C 1.50696 * 120.00238 * 179.97438 * 7 6 5 10 10 H 1.09003 * 109.47126 * 59.99966 * 9 7 6 11 11 C 1.50711 * 109.47152 * 300.00328 * 9 7 6 12 12 H 1.07995 * 119.99823 * 325.19118 * 11 9 7 13 13 C 1.37870 * 119.99746 * 145.18561 * 11 9 7 14 14 N 1.31518 * 120.00415 * 5.39644 * 13 11 9 15 15 Si 1.86803 * 119.99754 * 185.39213 * 13 11 9 16 16 H 1.48505 * 109.47158 * 90.00399 * 15 13 11 17 17 H 1.48499 * 109.47000 * 210.00056 * 15 13 11 18 18 H 1.48498 * 109.47060 * 330.00406 * 15 13 11 19 19 C 1.50694 * 109.47248 * 180.02562 * 9 7 6 20 20 C 1.38234 * 120.00250 * 66.00016 * 19 9 7 21 21 C 1.38237 * 119.99959 * 179.81140 * 20 19 9 22 22 C 1.38234 * 119.99686 * 0.39492 * 21 20 19 23 23 C 1.38237 * 120.00468 * 359.85604 * 22 21 20 24 24 C 1.38234 * 119.99823 * 359.95658 * 23 22 21 25 25 O 1.42906 * 109.47002 * 65.81675 * 3 2 1 26 26 C 1.42898 * 113.99987 * 248.62211 * 25 3 2 27 27 H 1.09008 * 109.46939 * 177.30882 * 1 2 3 28 28 H 1.09000 * 109.46929 * 297.30176 * 1 2 3 29 29 H 1.08991 * 109.47406 * 57.30561 * 1 2 3 30 30 H 1.09000 * 109.47298 * 240.00533 * 2 1 3 31 31 H 1.08995 * 109.47589 * 120.00684 * 2 1 3 32 32 H 1.09002 * 109.46576 * 59.99989 * 5 3 2 33 33 H 1.09001 * 109.47042 * 300.00374 * 5 3 2 34 34 H 0.97003 * 119.99698 * 359.97438 * 6 5 3 35 35 H 0.97002 * 119.99878 * 179.97438 * 14 13 11 36 36 H 1.08000 * 119.99912 * 359.97438 * 20 19 9 37 37 H 1.07996 * 120.00064 * 180.22248 * 21 20 19 38 38 H 1.08008 * 119.99859 * 179.83575 * 22 21 20 39 39 H 1.07998 * 120.00207 * 179.97438 * 23 22 21 40 40 H 1.07999 * 120.00006 * 179.97438 * 24 23 22 41 41 H 1.08992 * 109.47408 * 184.60465 * 26 25 3 42 42 H 1.09006 * 109.47101 * 304.60580 * 26 25 3 43 43 H 1.09004 * 109.47215 * 64.60340 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5941 1.9856 -0.8333 5 6 3.5630 1.4451 -0.1461 6 7 4.0513 2.8263 -0.1455 7 6 5.3708 3.0746 -0.2630 8 8 6.1538 2.1546 -0.3698 9 6 5.8731 4.4954 -0.2630 10 1 5.5967 4.9785 0.6743 11 6 5.2572 5.2460 -1.4156 12 1 5.0624 4.7379 -2.3484 13 6 4.9424 6.5813 -1.2791 14 7 5.2754 7.2268 -0.1827 15 14 4.0427 7.4738 -2.6515 16 1 2.5774 7.3621 -2.4375 17 1 4.4352 8.9060 -2.6511 18 1 4.4003 6.8629 -3.9569 19 6 7.3732 4.4979 -0.4067 20 6 7.9562 4.0493 -1.5771 21 6 9.3321 4.0553 -1.7103 22 6 10.1252 4.5021 -0.6701 23 6 9.5425 4.9459 0.5022 24 6 8.1664 4.9436 0.6341 25 8 1.6783 2.0756 1.2291 26 6 0.6965 3.1040 1.0863 27 1 -0.3633 -1.0266 -0.0483 28 1 -0.3633 0.4714 0.9132 29 1 -0.3634 0.5550 -0.8648 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.8388 0.9622 -1.0835 33 1 4.0088 0.9021 0.6873 34 1 3.4250 3.5621 -0.0604 35 1 5.0542 8.1664 -0.0868 36 1 7.3366 3.6967 -2.3883 37 1 9.7874 3.7082 -2.6260 38 1 11.2004 4.5043 -0.7732 39 1 10.1622 5.2946 1.3151 40 1 7.7111 5.2898 1.5501 41 1 0.5363 3.5896 2.0488 42 1 1.0441 3.8401 0.3613 43 1 -0.2400 2.6667 0.7397 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001527479349.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:25 Heat of formation + Delta-G solvation = -77.498795 kcal Electronic energy + Delta-G solvation = -23532.010883 eV Core-core repulsion = 20155.494322 eV Total energy + Delta-G solvation = -3376.516561 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.28664 -38.46249 -37.47065 -34.11820 -33.62388 -33.00819 -31.06102 -29.88819 -28.98433 -27.25177 -26.08895 -24.07115 -23.02572 -21.54895 -21.19035 -20.68128 -19.15037 -16.90894 -16.80152 -16.29176 -15.84721 -15.47310 -15.16603 -14.57140 -14.36133 -14.16173 -13.94583 -13.83137 -13.59147 -13.18624 -12.83299 -12.52163 -12.30345 -12.26587 -12.13168 -11.72032 -11.60910 -11.49936 -11.31400 -11.09137 -11.04465 -11.00096 -10.68795 -10.39529 -10.23290 -9.98547 -9.51412 -9.40067 -8.76597 -8.57941 -8.26849 -7.89611 -7.55580 -6.26743 -4.33214 2.42825 2.45562 3.16163 3.25349 3.28085 3.74394 3.82132 4.03168 4.27772 4.81627 4.86990 4.97636 5.00055 5.10282 5.23678 5.33060 5.45480 5.54921 5.67257 5.74778 5.76278 5.82722 5.83288 5.89019 5.93785 5.99033 6.04815 6.17409 6.26491 6.41876 6.54535 6.65051 6.90330 7.02271 7.19345 7.22920 7.29369 7.41592 7.49618 7.63376 7.79195 8.00151 8.11006 8.43327 8.71119 9.28182 9.33799 10.81523 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013161 B = 0.005255 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.947799 B = 5327.150756 C = 6697.111579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.135 4.135 3 C 0.077 3.923 4 H 0.069 0.931 5 C 0.116 3.884 6 N -0.725 5.725 7 C 0.527 3.473 8 O -0.569 6.569 9 C 0.050 3.950 10 H 0.088 0.912 11 C -0.514 4.514 12 H 0.062 0.938 13 C 0.073 3.927 14 N -0.876 5.876 15 Si 0.897 3.103 16 H -0.278 1.278 17 H -0.285 1.285 18 H -0.272 1.272 19 C -0.007 4.007 20 C -0.085 4.085 21 C -0.135 4.135 22 C -0.150 4.150 23 C -0.132 4.132 24 C -0.118 4.118 25 O -0.377 6.377 26 C 0.027 3.973 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.403 0.597 35 H 0.266 0.734 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.111 0.889 41 H 0.084 0.916 42 H 0.047 0.953 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.897 -7.560 0.811 10.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.173 4.173 3 C 0.019 3.981 4 H 0.087 0.913 5 C -0.008 4.008 6 N -0.377 5.377 7 C 0.317 3.683 8 O -0.448 6.448 9 C 0.029 3.971 10 H 0.106 0.894 11 C -0.552 4.552 12 H 0.080 0.920 13 C -0.132 4.132 14 N -0.512 5.512 15 Si 0.724 3.276 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.197 1.197 19 C -0.008 4.008 20 C -0.103 4.103 21 C -0.153 4.153 22 C -0.168 4.168 23 C -0.150 4.150 24 C -0.136 4.136 25 O -0.296 6.296 26 C -0.069 4.069 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.238 0.762 35 H 0.076 0.924 36 H 0.128 0.872 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.130 0.870 41 H 0.103 0.897 42 H 0.065 0.935 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -6.268 -8.082 1.008 10.278 hybrid contribution -0.913 1.145 -0.953 1.747 sum -7.181 -6.937 0.055 9.985 Atomic orbital electron populations 1.21761 0.95574 1.01631 1.01865 1.21837 0.96363 0.96022 1.03073 1.22483 0.94509 0.93805 0.87317 0.91260 1.21456 0.91843 0.85690 1.01848 1.45782 1.08710 1.07113 1.76143 1.21620 0.81021 0.92789 0.72911 1.90575 1.55707 1.47668 1.50893 1.18112 0.88880 0.88337 1.01741 0.89432 1.20690 1.41562 0.94837 0.98109 0.91977 1.24975 0.94997 0.97347 0.95858 1.69929 1.44579 1.10252 1.26427 0.86508 0.79773 0.79016 0.82304 1.20422 1.21024 1.19655 1.20007 0.96194 0.92450 0.92174 1.20808 0.93632 0.98281 0.97610 1.20942 0.94235 1.01881 0.98259 1.20787 0.98396 1.02984 0.94614 1.20895 0.94974 1.01737 0.97422 1.20986 0.93115 1.00696 0.98792 1.87948 1.59667 1.51819 1.30145 1.22900 0.90973 0.90302 1.02745 0.92650 0.92299 0.92976 0.90745 0.90806 0.91239 0.91588 0.76194 0.92374 0.87208 0.87651 0.87762 0.87596 0.87046 0.89714 0.93451 0.94317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.34 37.16 0.35 -1.02 16 2 C -0.13 -1.41 5.64 -26.73 -0.15 -1.56 16 3 C 0.08 0.98 2.31 -26.73 -0.06 0.92 16 4 H 0.07 0.84 7.59 -51.93 -0.39 0.44 16 5 C 0.12 1.85 5.37 -4.04 -0.02 1.83 16 6 N -0.73 -13.83 5.35 -60.29 -0.32 -14.15 16 7 C 0.53 12.02 7.04 -10.99 -0.08 11.94 16 8 O -0.57 -14.18 15.41 5.56 0.09 -14.10 16 9 C 0.05 1.22 2.37 -94.07 -0.22 1.00 16 10 H 0.09 2.25 7.14 -51.93 -0.37 1.88 16 11 C -0.51 -12.90 7.47 -34.44 -0.26 -13.16 16 12 H 0.06 1.58 7.82 -52.49 -0.41 1.16 16 13 C 0.07 1.85 5.45 -17.82 -0.10 1.75 16 14 N -0.88 -23.17 12.85 55.43 0.71 -22.46 16 15 Si 0.90 19.76 29.54 -169.99 -5.02 14.74 16 16 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 19 C -0.01 -0.17 4.30 -104.62 -0.45 -0.62 16 20 C -0.09 -1.96 8.30 -39.58 -0.33 -2.29 16 21 C -0.14 -2.74 10.05 -39.58 -0.40 -3.14 16 22 C -0.15 -2.86 10.05 -39.58 -0.40 -3.26 16 23 C -0.13 -2.63 10.05 -39.58 -0.40 -3.03 16 24 C -0.12 -2.65 9.67 -39.58 -0.38 -3.03 16 25 O -0.38 -5.21 9.71 -35.23 -0.34 -5.55 16 26 C 0.03 0.31 10.51 101.05 1.06 1.37 16 27 H 0.05 0.44 8.14 -51.92 -0.42 0.01 16 28 H 0.06 0.56 7.18 -51.93 -0.37 0.18 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.40 7.45 8.23 -40.82 -0.34 7.11 16 35 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 36 H 0.11 2.55 7.89 -52.49 -0.41 2.14 16 37 H 0.11 1.83 8.06 -52.49 -0.42 1.40 16 38 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 39 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 40 H 0.11 2.42 7.96 -52.49 -0.42 2.01 16 41 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.05 0.55 8.09 -51.93 -0.42 0.13 16 43 H 0.04 0.37 7.16 -51.93 -0.37 -0.01 16 LS Contribution 360.65 15.07 5.43 5.43 Total: -1.00 -29.38 360.65 -8.16 -37.54 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -6.87 Total: 10.84 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: -1.83 Total: -12.29 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 0.39 Total: -36.61 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.26 Total: -19.65 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.38 -8.16 -37.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527479349.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.961 kcal (2) G-P(sol) polarization free energy of solvation -29.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds