Wall clock time and date at job start Tue Mar 31 2020 06:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46842 * 2 1 4 4 H 1.08996 * 109.47576 * 305.81723 * 3 2 1 5 5 C 1.53005 * 109.47292 * 185.81136 * 3 2 1 6 6 N 1.46496 * 109.47457 * 180.02562 * 5 3 2 7 7 C 1.34776 * 120.00211 * 179.97438 * 6 5 3 8 8 O 1.21280 * 119.99825 * 0.02562 * 7 6 5 9 9 C 1.50696 * 120.00238 * 179.97438 * 7 6 5 10 10 H 1.09003 * 109.47126 * 59.99966 * 9 7 6 11 11 C 1.50711 * 109.47152 * 300.00328 * 9 7 6 12 12 H 1.07995 * 119.99823 * 325.19118 * 11 9 7 13 13 C 1.37870 * 119.99746 * 145.18561 * 11 9 7 14 14 N 1.31518 * 120.00415 * 5.39644 * 13 11 9 15 15 Si 1.86803 * 119.99754 * 185.39213 * 13 11 9 16 16 H 1.48505 * 109.47158 * 90.00399 * 15 13 11 17 17 H 1.48499 * 109.47000 * 210.00056 * 15 13 11 18 18 H 1.48498 * 109.47060 * 330.00406 * 15 13 11 19 19 C 1.50694 * 109.47248 * 180.02562 * 9 7 6 20 20 C 1.38234 * 120.00250 * 66.00016 * 19 9 7 21 21 C 1.38237 * 119.99959 * 179.81140 * 20 19 9 22 22 C 1.38234 * 119.99686 * 0.39492 * 21 20 19 23 23 C 1.38237 * 120.00468 * 359.85604 * 22 21 20 24 24 C 1.38234 * 119.99823 * 359.95658 * 23 22 21 25 25 O 1.42906 * 109.47002 * 65.81675 * 3 2 1 26 26 C 1.42898 * 113.99987 * 248.62211 * 25 3 2 27 27 H 1.09008 * 109.46939 * 177.30882 * 1 2 3 28 28 H 1.09000 * 109.46929 * 297.30176 * 1 2 3 29 29 H 1.08991 * 109.47406 * 57.30561 * 1 2 3 30 30 H 1.09000 * 109.47298 * 240.00533 * 2 1 3 31 31 H 1.08995 * 109.47589 * 120.00684 * 2 1 3 32 32 H 1.09002 * 109.46576 * 59.99989 * 5 3 2 33 33 H 1.09001 * 109.47042 * 300.00374 * 5 3 2 34 34 H 0.97003 * 119.99698 * 359.97438 * 6 5 3 35 35 H 0.97002 * 119.99878 * 179.97438 * 14 13 11 36 36 H 1.08000 * 119.99912 * 359.97438 * 20 19 9 37 37 H 1.07996 * 120.00064 * 180.22248 * 21 20 19 38 38 H 1.08008 * 119.99859 * 179.83575 * 22 21 20 39 39 H 1.07998 * 120.00207 * 179.97438 * 23 22 21 40 40 H 1.07999 * 120.00006 * 179.97438 * 24 23 22 41 41 H 1.08992 * 109.47408 * 184.60465 * 26 25 3 42 42 H 1.09006 * 109.47101 * 304.60580 * 26 25 3 43 43 H 1.09004 * 109.47215 * 64.60340 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5941 1.9856 -0.8333 5 6 3.5630 1.4451 -0.1461 6 7 4.0513 2.8263 -0.1455 7 6 5.3708 3.0746 -0.2630 8 8 6.1538 2.1546 -0.3698 9 6 5.8731 4.4954 -0.2630 10 1 5.5967 4.9785 0.6743 11 6 5.2572 5.2460 -1.4156 12 1 5.0624 4.7379 -2.3484 13 6 4.9424 6.5813 -1.2791 14 7 5.2754 7.2268 -0.1827 15 14 4.0427 7.4738 -2.6515 16 1 2.5774 7.3621 -2.4375 17 1 4.4352 8.9060 -2.6511 18 1 4.4003 6.8629 -3.9569 19 6 7.3732 4.4979 -0.4067 20 6 7.9562 4.0493 -1.5771 21 6 9.3321 4.0553 -1.7103 22 6 10.1252 4.5021 -0.6701 23 6 9.5425 4.9459 0.5022 24 6 8.1664 4.9436 0.6341 25 8 1.6783 2.0756 1.2291 26 6 0.6965 3.1040 1.0863 27 1 -0.3633 -1.0266 -0.0483 28 1 -0.3633 0.4714 0.9132 29 1 -0.3634 0.5550 -0.8648 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.8388 0.9622 -1.0835 33 1 4.0088 0.9021 0.6873 34 1 3.4250 3.5621 -0.0604 35 1 5.0542 8.1664 -0.0868 36 1 7.3366 3.6967 -2.3883 37 1 9.7874 3.7082 -2.6260 38 1 11.2004 4.5043 -0.7732 39 1 10.1622 5.2946 1.3151 40 1 7.7111 5.2898 1.5501 41 1 0.5363 3.5896 2.0488 42 1 1.0441 3.8401 0.3613 43 1 -0.2400 2.6667 0.7397 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001527479349.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:24 Heat of formation + Delta-G solvation = -94.641904 kcal Electronic energy + Delta-G solvation = -23532.754264 eV Core-core repulsion = 20155.494322 eV Total energy + Delta-G solvation = -3377.259942 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.92342 -39.75269 -39.02172 -35.53596 -35.47076 -34.10845 -32.87803 -31.53386 -30.24427 -28.83135 -27.18390 -25.81000 -24.24616 -23.20567 -22.31285 -22.21762 -20.83809 -18.69279 -18.02516 -17.81175 -17.55383 -16.89867 -16.42549 -16.21161 -15.84204 -15.72161 -15.42103 -15.19129 -14.72982 -14.42672 -14.17825 -14.04147 -13.93424 -13.80345 -13.37529 -13.29953 -13.06178 -12.82119 -12.76570 -12.56377 -12.25128 -12.19808 -12.00633 -11.94714 -11.67362 -11.62948 -11.27629 -10.69283 -10.62130 -10.34101 -9.89665 -9.55609 -9.25227 -8.20947 -6.33475 0.75930 0.80962 1.41399 1.44278 1.53404 1.95100 2.41798 2.51223 2.80560 3.07816 3.27177 3.76890 3.99850 4.06392 4.22212 4.30256 4.38111 4.39796 4.45949 4.48744 4.53951 4.55919 4.61751 4.71059 4.80194 4.87098 4.87739 4.97490 4.99194 5.10176 5.10964 5.20243 5.37081 5.40759 5.44927 5.64097 5.67030 5.78550 5.83293 5.94863 6.23913 6.26009 6.40789 6.69878 6.77569 7.33655 7.53418 8.87212 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013161 B = 0.005255 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.947799 B = 5327.150756 C = 6697.111579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C 0.084 3.916 4 H 0.079 0.921 5 C 0.114 3.886 6 N -0.715 5.715 7 C 0.524 3.476 8 O -0.595 6.595 9 C 0.053 3.947 10 H 0.063 0.937 11 C -0.517 4.517 12 H 0.054 0.946 13 C 0.033 3.967 14 N -0.905 5.905 15 Si 0.956 3.044 16 H -0.263 1.263 17 H -0.287 1.287 18 H -0.273 1.273 19 C -0.036 4.036 20 C -0.111 4.111 21 C -0.135 4.135 22 C -0.144 4.144 23 C -0.130 4.130 24 C -0.144 4.144 25 O -0.398 6.398 26 C 0.023 3.977 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.054 0.946 34 H 0.406 0.594 35 H 0.267 0.733 36 H 0.095 0.905 37 H 0.137 0.863 38 H 0.148 0.852 39 H 0.140 0.860 40 H 0.105 0.895 41 H 0.091 0.909 42 H 0.040 0.960 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.956 -7.852 -0.005 10.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.169 4.169 3 C 0.025 3.975 4 H 0.097 0.903 5 C -0.010 4.010 6 N -0.365 5.365 7 C 0.313 3.687 8 O -0.476 6.476 9 C 0.031 3.969 10 H 0.081 0.919 11 C -0.555 4.555 12 H 0.072 0.928 13 C -0.169 4.169 14 N -0.542 5.542 15 Si 0.781 3.219 16 H -0.188 1.188 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.037 4.037 20 C -0.129 4.129 21 C -0.153 4.153 22 C -0.162 4.162 23 C -0.148 4.148 24 C -0.162 4.162 25 O -0.317 6.317 26 C -0.073 4.073 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.241 0.759 35 H 0.076 0.924 36 H 0.113 0.887 37 H 0.154 0.846 38 H 0.166 0.834 39 H 0.158 0.842 40 H 0.123 0.877 41 H 0.110 0.890 42 H 0.058 0.942 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.369 -8.386 0.198 10.532 hybrid contribution -0.832 1.203 -0.659 1.604 sum -7.201 -7.183 -0.461 10.182 Atomic orbital electron populations 1.21733 0.94111 1.02665 1.01936 1.21825 0.97555 0.94119 1.03428 1.22475 0.91978 0.95579 0.87422 0.90316 1.21672 0.94328 0.83495 1.01526 1.45732 1.07532 1.08788 1.74489 1.21437 0.82097 0.92053 0.73086 1.90539 1.56629 1.48018 1.52452 1.18001 0.89799 0.88867 1.00195 0.91917 1.20741 1.41625 0.95159 0.97930 0.92814 1.25635 0.95600 0.97869 0.97820 1.70038 1.45668 1.10436 1.28038 0.85590 0.79409 0.77444 0.79478 1.18813 1.21240 1.19806 1.20114 0.96143 0.94097 0.93381 1.20842 0.95166 0.99829 0.97080 1.21331 0.93118 1.00885 0.99954 1.21276 1.00508 1.00944 0.93429 1.21303 0.94034 1.00532 0.98883 1.21135 0.94714 1.01856 0.98475 1.87920 1.60556 1.52486 1.30720 1.23042 0.91302 0.89824 1.03167 0.91239 0.92752 0.92288 0.89582 0.91321 0.90928 0.92712 0.75885 0.92366 0.88691 0.84562 0.83445 0.84250 0.87715 0.89008 0.94157 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.34 71.98 0.67 -1.66 16 2 C -0.13 -2.55 5.64 30.59 0.17 -2.38 16 3 C 0.08 2.07 2.31 30.60 0.07 2.14 16 4 H 0.08 1.80 7.59 -2.39 -0.02 1.78 16 5 C 0.11 3.65 5.37 86.38 0.46 4.12 16 6 N -0.71 -28.06 5.35 -463.06 -2.48 -30.54 16 7 C 0.52 24.87 7.04 87.66 0.62 25.49 16 8 O -0.59 -30.68 15.41 -3.03 -0.05 -30.72 16 9 C 0.05 2.66 2.37 -13.03 -0.03 2.63 16 10 H 0.06 3.42 7.14 -2.39 -0.02 3.40 16 11 C -0.52 -26.69 7.47 25.60 0.19 -26.50 16 12 H 0.05 2.80 7.82 -2.91 -0.02 2.78 16 13 C 0.03 1.68 5.45 84.65 0.46 2.14 16 14 N -0.91 -48.96 12.85 21.44 0.28 -48.69 16 15 Si 0.96 40.65 29.54 68.60 2.03 42.67 16 16 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 17 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 18 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 19 C -0.04 -1.80 4.30 -19.87 -0.09 -1.89 16 20 C -0.11 -5.19 8.30 22.27 0.18 -5.01 16 21 C -0.14 -5.26 10.05 22.27 0.22 -5.03 16 22 C -0.14 -5.08 10.05 22.27 0.22 -4.86 16 23 C -0.13 -4.94 10.05 22.27 0.22 -4.72 16 24 C -0.14 -6.58 9.67 22.27 0.22 -6.36 16 25 O -0.40 -10.77 9.71 -148.98 -1.45 -12.22 16 26 C 0.02 0.49 10.51 113.37 1.19 1.68 16 27 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 28 H 0.05 0.91 7.18 -2.39 -0.02 0.90 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.41 15.43 8.23 -92.71 -0.76 14.66 16 35 H 0.27 13.74 8.31 -92.71 -0.77 12.97 16 36 H 0.09 4.59 7.89 -2.91 -0.02 4.56 16 37 H 0.14 4.35 8.06 -2.91 -0.02 4.33 16 38 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 39 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 40 H 0.10 4.77 7.96 -2.91 -0.02 4.74 16 41 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.04 0.92 8.09 -2.38 -0.02 0.90 16 43 H 0.06 1.04 7.16 -2.39 -0.02 1.02 16 Total: -1.00 -64.47 360.65 3.35 -61.12 By element: Atomic # 1 Polarization: 38.35 SS G_CDS: 0.22 Total: 38.57 kcal Atomic # 6 Polarization: -25.00 SS G_CDS: 4.80 Total: -20.20 kcal Atomic # 7 Polarization: -77.02 SS G_CDS: -2.20 Total: -79.22 kcal Atomic # 8 Polarization: -41.45 SS G_CDS: -1.49 Total: -42.94 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.67 kcal Total: -64.47 3.35 -61.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527479349.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.520 kcal (2) G-P(sol) polarization free energy of solvation -64.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds