Wall clock time and date at job start Tue Mar 31 2020 06:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47017 * 2 1 4 4 N 1.46504 * 109.46856 * 119.99650 * 2 1 3 5 5 C 1.46492 * 120.00321 * 299.99803 * 4 2 1 6 6 C 1.50698 * 109.47527 * 270.00548 * 5 4 2 7 7 H 1.08005 * 120.00069 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00239 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99974 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00165 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47233 * 60.00284 * 10 8 6 12 12 H 1.48501 * 109.47273 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.47169 * 300.00554 * 10 8 6 14 14 C 1.34779 * 119.99726 * 120.00055 * 4 2 1 15 15 O 1.21280 * 119.99859 * 179.97438 * 14 4 2 16 16 C 1.50698 * 120.00088 * 0.02562 * 14 4 2 17 17 C 1.52997 * 109.46983 * 179.97438 * 16 14 4 18 18 C 1.50707 * 109.46986 * 179.97438 * 17 16 14 19 19 C 1.38289 * 119.96926 * 270.01927 * 18 17 16 20 20 C 1.38240 * 120.11036 * 180.02562 * 19 18 17 21 21 C 1.38173 * 120.05812 * 359.67646 * 20 19 18 22 22 C 1.38709 * 119.93675 * 0.57760 * 21 20 19 23 23 O 1.35905 * 120.05346 * 179.72475 * 22 21 20 24 24 C 1.38116 * 119.97322 * 89.99956 * 18 17 16 25 25 H 1.08998 * 109.47677 * 299.99931 * 1 2 3 26 26 H 1.08994 * 109.47099 * 60.00260 * 1 2 3 27 27 H 1.09011 * 109.47128 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47035 * 239.99721 * 2 1 3 29 29 H 1.08998 * 109.47085 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.47105 * 300.00050 * 3 2 1 31 31 H 1.09002 * 109.47446 * 59.99972 * 3 2 1 32 32 H 1.09005 * 109.47072 * 30.00649 * 5 4 2 33 33 H 1.09002 * 109.47494 * 150.00014 * 5 4 2 34 34 H 0.96998 * 119.99783 * 179.97438 * 9 8 6 35 35 H 1.09002 * 109.47472 * 59.99277 * 16 14 4 36 36 H 1.09007 * 109.46797 * 299.99211 * 16 14 4 37 37 H 1.09002 * 109.47572 * 59.99381 * 17 16 14 38 38 H 1.09000 * 109.47040 * 299.99035 * 17 16 14 39 39 H 1.08001 * 119.94341 * 0.02562 * 19 18 17 40 40 H 1.08006 * 119.97312 * 179.97438 * 20 19 18 41 41 H 1.07996 * 120.03009 * 180.29712 * 21 20 19 42 42 H 0.96705 * 113.99576 * 269.72355 * 23 22 21 43 43 H 1.08003 * 120.03068 * 0.02562 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 1.6644 -0.1900 2.5268 6 6 2.7031 0.8020 2.9830 7 1 3.5431 1.0359 2.3457 8 6 2.5810 1.4110 4.2139 9 7 1.5584 1.1258 4.9902 10 14 3.8689 2.6401 4.7797 11 1 3.9252 3.7741 3.8225 12 1 3.5101 3.1475 6.1284 13 1 5.1956 1.9753 4.8382 14 6 2.7931 -1.7864 1.0726 15 8 3.1977 -2.3578 2.0629 16 6 3.1577 -2.3010 -0.2961 17 6 4.0377 -3.5446 -0.1556 18 6 4.4018 -4.0596 -1.5243 19 6 3.5905 -4.9873 -2.1517 20 6 3.9219 -5.4620 -3.4070 21 6 5.0616 -5.0054 -4.0409 22 6 5.8797 -4.0789 -3.4115 23 8 7.0043 -3.6324 -4.0304 24 6 5.5451 -3.6043 -2.1513 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0278 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 0.6903 0.2974 2.4844 33 1 1.6237 -1.0225 3.2293 34 1 1.4728 1.5540 5.8563 35 1 3.7029 -1.5301 -0.8408 36 1 2.2495 -2.5578 -0.8414 37 1 3.4929 -4.3156 0.3893 38 1 4.9459 -3.2874 0.3895 39 1 2.6965 -5.3415 -1.6601 40 1 3.2869 -6.1869 -3.8948 41 1 5.3176 -5.3730 -5.0236 42 1 7.7932 -4.1582 -3.8398 43 1 6.1785 -2.8798 -1.6609 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001527632508.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:35 Heat of formation + Delta-G solvation = -69.728948 kcal Electronic energy + Delta-G solvation = -23099.466754 eV Core-core repulsion = 19723.287119 eV Total energy + Delta-G solvation = -3376.179635 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.99390 -39.14247 -37.10348 -35.96230 -33.70277 -32.75927 -30.79983 -30.30346 -29.55432 -27.33509 -26.69449 -24.66350 -22.73583 -22.56689 -21.36781 -20.88805 -18.18294 -17.89582 -16.69632 -16.44654 -16.41010 -16.00352 -15.25414 -15.11067 -14.78595 -14.32950 -13.96103 -13.52413 -13.46862 -13.23988 -12.89809 -12.63602 -12.35999 -12.23405 -11.92803 -11.77637 -11.71003 -11.57755 -11.48358 -11.12089 -10.93376 -10.82616 -10.76868 -10.57975 -10.52948 -10.33690 -9.98665 -9.52915 -9.04191 -8.85739 -8.64652 -8.39210 -7.60986 -6.00839 -4.04054 1.09126 1.18040 3.33076 3.37741 3.39388 3.45306 3.48882 3.92815 4.06483 4.47018 4.68259 4.74051 4.96857 5.15293 5.22008 5.22885 5.27896 5.33350 5.38250 5.43659 5.58685 5.68140 5.70044 5.74360 5.87142 6.02647 6.04040 6.18872 6.24300 6.25916 6.29152 6.32358 6.39203 6.54160 6.62443 6.68329 6.98632 7.15236 7.45679 7.50367 7.61313 7.96223 8.28870 8.49532 8.94694 9.14828 9.60016 11.07297 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019863 B = 0.003538 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.282570 B = 7912.936563 C = 8288.582022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.132 3.868 3 C -0.157 4.157 4 N -0.593 5.593 5 C 0.246 3.754 6 C -0.519 4.519 7 H 0.057 0.943 8 C 0.060 3.940 9 N -0.896 5.896 10 Si 0.895 3.105 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.504 3.496 15 O -0.544 6.544 16 C -0.134 4.134 17 C -0.067 4.067 18 C -0.057 4.057 19 C -0.126 4.126 20 C -0.103 4.103 21 C -0.155 4.155 22 C 0.103 3.897 23 O -0.501 6.501 24 C -0.142 4.142 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.075 0.925 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.080 0.920 32 H 0.033 0.967 33 H 0.041 0.959 34 H 0.263 0.737 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.389 0.611 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.393 -9.913 -18.226 21.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.028 3.972 3 C -0.215 4.215 4 N -0.325 5.325 5 C 0.127 3.873 6 C -0.558 4.558 7 H 0.075 0.925 8 C -0.142 4.142 9 N -0.536 5.536 10 Si 0.722 3.278 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.203 1.203 14 C 0.290 3.710 15 O -0.422 6.422 16 C -0.174 4.174 17 C -0.105 4.105 18 C -0.057 4.057 19 C -0.144 4.144 20 C -0.121 4.121 21 C -0.173 4.173 22 C 0.059 3.941 23 O -0.311 6.311 24 C -0.160 4.160 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.244 0.756 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.129 -9.715 -17.724 20.452 hybrid contribution 1.022 0.508 0.443 1.225 sum 4.152 -9.207 -17.280 20.015 Atomic orbital electron populations 1.22156 0.95661 1.01733 1.02414 1.20998 0.94053 0.94141 0.88021 1.22137 1.01338 0.95751 1.02260 1.48337 1.49154 1.26432 1.08580 1.19216 0.95825 0.94924 0.77347 1.21411 1.08876 1.23388 1.02087 0.92466 1.24923 0.95740 0.97140 0.96362 1.69922 1.29539 1.43390 1.10706 0.86616 0.82085 0.81299 0.77757 1.20287 1.21265 1.20271 1.20323 0.79167 0.80972 0.90504 1.90665 1.53466 1.58280 1.39798 1.21674 1.00841 0.98175 0.96731 1.20386 1.01046 0.97141 0.91907 1.19933 0.93790 0.95546 0.96421 1.21150 0.99910 0.97912 0.95408 1.21017 0.96483 0.99569 0.95037 1.21369 0.96825 0.98354 1.00788 1.18475 0.89180 0.95183 0.91233 1.84829 1.17901 1.56866 1.71497 1.21400 0.98692 1.01535 0.94386 0.91329 0.92318 0.92958 0.90685 0.92790 0.93310 0.90089 0.94871 0.94143 0.92772 0.89492 0.89605 0.89962 0.89981 0.85611 0.85702 0.85756 0.75561 0.85289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 9.17 37.16 0.34 -2.04 16 2 C 0.13 2.17 3.17 -67.93 -0.22 1.96 16 3 C -0.16 -2.62 8.47 37.16 0.31 -2.31 16 4 N -0.59 -12.39 2.39 -167.47 -0.40 -12.79 16 5 C 0.25 6.34 4.59 -5.20 -0.02 6.32 16 6 C -0.52 -14.45 7.83 -34.44 -0.27 -14.72 16 7 H 0.06 1.59 7.63 -52.48 -0.40 1.19 16 8 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 9 N -0.90 -26.56 13.29 55.43 0.74 -25.83 16 10 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 C 0.50 10.32 7.67 -10.99 -0.08 10.24 16 15 O -0.54 -13.50 15.56 5.56 0.09 -13.42 16 16 C -0.13 -1.97 3.99 -27.89 -0.11 -2.08 16 17 C -0.07 -0.92 4.63 -27.88 -0.13 -1.05 16 18 C -0.06 -0.67 5.13 -104.64 -0.54 -1.21 16 19 C -0.13 -1.31 9.70 -39.56 -0.38 -1.70 16 20 C -0.10 -0.96 10.04 -39.60 -0.40 -1.35 16 21 C -0.15 -1.50 9.99 -39.43 -0.39 -1.89 16 22 C 0.10 1.12 6.70 -39.22 -0.26 0.86 16 23 O -0.50 -4.88 13.50 -19.44 -0.26 -5.14 16 24 C -0.14 -1.65 9.64 -39.43 -0.38 -2.03 16 25 H 0.07 1.15 6.66 -51.93 -0.35 0.81 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.74 8.14 -51.92 -0.42 0.31 16 28 H 0.08 1.03 5.77 -51.93 -0.30 0.73 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 1.60 6.92 -51.93 -0.36 1.24 16 32 H 0.03 0.87 6.43 -51.93 -0.33 0.53 16 33 H 0.04 1.19 7.42 -51.93 -0.39 0.81 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.09 1.20 7.79 -51.93 -0.40 0.79 16 36 H 0.09 1.09 7.79 -51.92 -0.40 0.69 16 37 H 0.08 1.16 8.04 -51.93 -0.42 0.74 16 38 H 0.08 1.22 8.04 -51.93 -0.42 0.80 16 39 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 40 H 0.13 0.86 8.06 -52.48 -0.42 0.43 16 41 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 42 H 0.39 1.88 9.06 45.56 0.41 2.29 16 43 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16 LS Contribution 356.45 15.07 5.37 5.37 Total: -1.00 -33.71 356.45 -7.99 -41.70 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -5.87 Total: 2.66 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -2.63 Total: -9.41 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.34 Total: -38.62 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.18 Total: -18.56 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.71 -7.99 -41.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527632508.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.032 kcal (2) G-P(sol) polarization free energy of solvation -33.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds