Wall clock time and date at job start Tue Mar 31 2020 06:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47017 * 2 1 4 4 N 1.46504 * 109.46856 * 119.99650 * 2 1 3 5 5 C 1.46492 * 120.00321 * 299.99803 * 4 2 1 6 6 C 1.50698 * 109.47527 * 270.00548 * 5 4 2 7 7 H 1.08005 * 120.00069 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00239 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99974 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00165 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47233 * 60.00284 * 10 8 6 12 12 H 1.48501 * 109.47273 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.47169 * 300.00554 * 10 8 6 14 14 C 1.34779 * 119.99726 * 120.00055 * 4 2 1 15 15 O 1.21280 * 119.99859 * 179.97438 * 14 4 2 16 16 C 1.50698 * 120.00088 * 0.02562 * 14 4 2 17 17 C 1.52997 * 109.46983 * 179.97438 * 16 14 4 18 18 C 1.50707 * 109.46986 * 179.97438 * 17 16 14 19 19 C 1.38289 * 119.96926 * 270.01927 * 18 17 16 20 20 C 1.38240 * 120.11036 * 180.02562 * 19 18 17 21 21 C 1.38173 * 120.05812 * 359.67646 * 20 19 18 22 22 C 1.38709 * 119.93675 * 0.57760 * 21 20 19 23 23 O 1.35905 * 120.05346 * 179.72475 * 22 21 20 24 24 C 1.38116 * 119.97322 * 89.99956 * 18 17 16 25 25 H 1.08998 * 109.47677 * 299.99931 * 1 2 3 26 26 H 1.08994 * 109.47099 * 60.00260 * 1 2 3 27 27 H 1.09011 * 109.47128 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47035 * 239.99721 * 2 1 3 29 29 H 1.08998 * 109.47085 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.47105 * 300.00050 * 3 2 1 31 31 H 1.09002 * 109.47446 * 59.99972 * 3 2 1 32 32 H 1.09005 * 109.47072 * 30.00649 * 5 4 2 33 33 H 1.09002 * 109.47494 * 150.00014 * 5 4 2 34 34 H 0.96998 * 119.99783 * 179.97438 * 9 8 6 35 35 H 1.09002 * 109.47472 * 59.99277 * 16 14 4 36 36 H 1.09007 * 109.46797 * 299.99211 * 16 14 4 37 37 H 1.09002 * 109.47572 * 59.99381 * 17 16 14 38 38 H 1.09000 * 109.47040 * 299.99035 * 17 16 14 39 39 H 1.08001 * 119.94341 * 0.02562 * 19 18 17 40 40 H 1.08006 * 119.97312 * 179.97438 * 20 19 18 41 41 H 1.07996 * 120.03009 * 180.29712 * 21 20 19 42 42 H 0.96705 * 113.99576 * 269.72355 * 23 22 21 43 43 H 1.08003 * 120.03068 * 0.02562 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 1.6644 -0.1900 2.5268 6 6 2.7031 0.8020 2.9830 7 1 3.5431 1.0359 2.3457 8 6 2.5810 1.4110 4.2139 9 7 1.5584 1.1258 4.9902 10 14 3.8689 2.6401 4.7797 11 1 3.9252 3.7741 3.8225 12 1 3.5101 3.1475 6.1284 13 1 5.1956 1.9753 4.8382 14 6 2.7931 -1.7864 1.0726 15 8 3.1977 -2.3578 2.0629 16 6 3.1577 -2.3010 -0.2961 17 6 4.0377 -3.5446 -0.1556 18 6 4.4018 -4.0596 -1.5243 19 6 3.5905 -4.9873 -2.1517 20 6 3.9219 -5.4620 -3.4070 21 6 5.0616 -5.0054 -4.0409 22 6 5.8797 -4.0789 -3.4115 23 8 7.0043 -3.6324 -4.0304 24 6 5.5451 -3.6043 -2.1513 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0278 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 0.6903 0.2974 2.4844 33 1 1.6237 -1.0225 3.2293 34 1 1.4728 1.5540 5.8563 35 1 3.7029 -1.5301 -0.8408 36 1 2.2495 -2.5578 -0.8414 37 1 3.4929 -4.3156 0.3893 38 1 4.9459 -3.2874 0.3895 39 1 2.6965 -5.3415 -1.6601 40 1 3.2869 -6.1869 -3.8948 41 1 5.3176 -5.3730 -5.0236 42 1 7.7932 -4.1582 -3.8398 43 1 6.1785 -2.8798 -1.6609 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001527632508.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:34 Heat of formation + Delta-G solvation = -91.566088 kcal Electronic energy + Delta-G solvation = -23100.413684 eV Core-core repulsion = 19723.287119 eV Total energy + Delta-G solvation = -3377.126564 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.04211 -40.48775 -37.94545 -37.50970 -35.06588 -34.56053 -32.40523 -31.28213 -30.54450 -29.11421 -27.97837 -26.08731 -24.33454 -23.47639 -22.67634 -21.96280 -19.46296 -19.00573 -18.59748 -18.05726 -17.23812 -16.95803 -16.91159 -16.25317 -16.05361 -16.00083 -15.00620 -14.85268 -14.77683 -14.51844 -14.11972 -13.90604 -13.70064 -13.64352 -13.33284 -13.21713 -12.88826 -12.85148 -12.71230 -12.68074 -12.47046 -12.40376 -12.22583 -12.08164 -11.91732 -11.63865 -11.51925 -11.35210 -10.60800 -10.55664 -9.76611 -9.49359 -9.40028 -8.19148 -6.31140 0.32359 0.39873 1.35410 1.39271 1.46236 1.86358 2.31536 2.45557 2.73028 3.10329 3.31192 3.60724 3.95072 3.97684 4.02279 4.18732 4.19982 4.29352 4.31986 4.43077 4.46359 4.58722 4.62875 4.83464 4.86391 4.88433 5.01526 5.03488 5.05727 5.09516 5.13373 5.20923 5.25468 5.44408 5.49702 5.50831 5.57195 5.65171 5.69455 5.90975 5.95433 6.12397 6.74732 6.86321 6.87871 7.32203 7.52875 8.87965 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019863 B = 0.003538 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.282570 B = 7912.936563 C = 8288.582022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.124 3.876 3 C -0.152 4.152 4 N -0.598 5.598 5 C 0.264 3.736 6 C -0.527 4.527 7 H 0.053 0.947 8 C 0.006 3.994 9 N -0.931 5.931 10 Si 0.960 3.040 11 H -0.261 1.261 12 H -0.280 1.280 13 H -0.279 1.279 14 C 0.493 3.507 15 O -0.599 6.599 16 C -0.117 4.117 17 C -0.060 4.060 18 C -0.065 4.065 19 C -0.131 4.131 20 C -0.098 4.098 21 C -0.155 4.155 22 C 0.098 3.902 23 O -0.512 6.512 24 C -0.157 4.157 25 H 0.037 0.963 26 H 0.096 0.904 27 H 0.058 0.942 28 H 0.115 0.885 29 H 0.042 0.958 30 H 0.089 0.911 31 H 0.043 0.957 32 H 0.025 0.975 33 H -0.009 1.009 34 H 0.265 0.735 35 H 0.103 0.897 36 H 0.117 0.883 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.138 0.862 40 H 0.154 0.846 41 H 0.144 0.856 42 H 0.409 0.591 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.676 -10.009 -21.553 24.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.022 3.978 3 C -0.210 4.210 4 N -0.329 5.329 5 C 0.143 3.857 6 C -0.566 4.566 7 H 0.071 0.929 8 C -0.192 4.192 9 N -0.571 5.571 10 Si 0.785 3.215 11 H -0.186 1.186 12 H -0.205 1.205 13 H -0.205 1.205 14 C 0.282 3.718 15 O -0.481 6.481 16 C -0.157 4.157 17 C -0.098 4.098 18 C -0.066 4.066 19 C -0.149 4.149 20 C -0.116 4.116 21 C -0.173 4.173 22 C 0.054 3.946 23 O -0.326 6.326 24 C -0.176 4.176 25 H 0.056 0.944 26 H 0.115 0.885 27 H 0.077 0.923 28 H 0.132 0.868 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.062 0.938 32 H 0.043 0.957 33 H 0.009 0.991 34 H 0.074 0.926 35 H 0.122 0.878 36 H 0.135 0.865 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.156 0.844 40 H 0.171 0.829 41 H 0.162 0.838 42 H 0.267 0.733 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.415 -9.803 -21.100 23.516 hybrid contribution 0.945 0.485 1.416 1.770 sum 4.359 -9.318 -19.684 22.210 Atomic orbital electron populations 1.22117 0.94236 1.02299 1.02735 1.21414 0.95261 0.93933 0.87201 1.22080 1.00571 0.95980 1.02378 1.48395 1.49313 1.26976 1.08221 1.18625 0.95170 0.92559 0.79373 1.21648 1.08988 1.23628 1.02329 0.92893 1.25800 0.97810 0.99112 0.96510 1.70046 1.31327 1.44605 1.11110 0.85577 0.78925 0.79199 0.77774 1.18555 1.20511 1.20512 1.21413 0.77890 0.80143 0.92335 1.90632 1.55360 1.59831 1.42256 1.21635 1.02497 0.98764 0.92788 1.20232 0.99780 0.96544 0.93198 1.19703 0.94675 0.96814 0.95360 1.21337 1.00118 0.97452 0.95988 1.21339 0.96429 0.99384 0.94402 1.21654 0.96507 0.97629 1.01520 1.18582 0.89789 0.95327 0.90934 1.84771 1.18626 1.57794 1.71361 1.21432 0.98867 1.02123 0.95168 0.94370 0.88534 0.92313 0.86768 0.93908 0.89255 0.93814 0.95735 0.99078 0.92613 0.87830 0.86491 0.90821 0.92088 0.84431 0.82872 0.83774 0.73255 0.85963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.31 9.17 71.98 0.66 -3.65 16 2 C 0.12 3.87 3.17 44.99 0.14 4.01 16 3 C -0.15 -4.88 8.47 71.98 0.61 -4.27 16 4 N -0.60 -25.41 2.39 -802.15 -1.91 -27.32 16 5 C 0.26 14.33 4.59 85.63 0.39 14.73 16 6 C -0.53 -30.43 7.83 25.60 0.20 -30.23 16 7 H 0.05 3.03 7.63 -2.91 -0.02 3.01 16 8 C 0.01 0.35 5.46 84.65 0.46 0.82 16 9 N -0.93 -57.05 13.29 21.45 0.28 -56.76 16 10 Si 0.96 45.63 29.54 68.60 2.03 47.65 16 11 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 13 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 14 C 0.49 20.56 7.67 87.66 0.67 21.23 16 15 O -0.60 -31.28 15.56 -3.03 -0.05 -31.33 16 16 C -0.12 -3.28 3.99 29.85 0.12 -3.16 16 17 C -0.06 -1.63 4.63 29.85 0.14 -1.49 16 18 C -0.07 -1.45 5.13 -19.88 -0.10 -1.55 16 19 C -0.13 -2.39 9.70 22.28 0.22 -2.18 16 20 C -0.10 -1.47 10.04 22.25 0.22 -1.25 16 21 C -0.15 -2.50 9.99 22.37 0.22 -2.28 16 22 C 0.10 1.91 6.70 22.51 0.15 2.06 16 23 O -0.51 -8.95 13.50 -92.48 -1.25 -10.19 16 24 C -0.16 -3.48 9.64 22.36 0.22 -3.26 16 25 H 0.04 1.28 6.66 -2.39 -0.02 1.26 16 26 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 28 H 0.11 2.70 5.77 -2.39 -0.01 2.68 16 29 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.04 1.72 6.92 -2.39 -0.02 1.71 16 32 H 0.02 1.36 6.43 -2.38 -0.02 1.35 16 33 H -0.01 -0.56 7.42 -2.39 -0.02 -0.58 16 34 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 35 H 0.10 2.61 7.79 -2.39 -0.02 2.59 16 36 H 0.12 2.58 7.79 -2.38 -0.02 2.57 16 37 H 0.07 2.10 8.04 -2.39 -0.02 2.08 16 38 H 0.06 1.89 8.04 -2.39 -0.02 1.87 16 39 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 40 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 41 H 0.14 1.73 8.06 -2.91 -0.02 1.70 16 42 H 0.41 3.17 9.06 -74.05 -0.67 2.50 16 43 H 0.12 2.76 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -77.43 356.45 3.76 -73.68 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 0.33 Total: 14.76 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: 4.33 Total: -10.48 kcal Atomic # 7 Polarization: -82.46 SS G_CDS: -1.63 Total: -84.09 kcal Atomic # 8 Polarization: -40.23 SS G_CDS: -1.30 Total: -41.52 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.65 kcal Total: -77.43 3.76 -73.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527632508.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.891 kcal (2) G-P(sol) polarization free energy of solvation -77.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds