Wall clock time and date at job start Tue Mar 31 2020 06:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46840 * 2 1 4 4 N 1.46506 * 109.46871 * 179.97438 * 3 2 1 5 5 C 1.46497 * 120.00623 * 270.00260 * 4 3 2 6 6 C 1.53000 * 109.47123 * 264.82090 * 5 4 3 7 7 O 1.42902 * 109.47131 * 64.99429 * 6 5 4 8 8 C 1.34781 * 119.99605 * 90.00395 * 4 3 2 9 9 O 1.21285 * 120.00023 * 4.54378 * 8 4 3 10 10 C 1.50700 * 119.99931 * 184.54726 * 8 4 3 11 11 H 1.08994 * 109.47235 * 333.68035 * 10 8 4 12 12 C 1.50698 * 109.47073 * 93.68433 * 10 8 4 13 13 H 1.07995 * 119.99923 * 236.81714 * 12 10 8 14 14 C 1.37880 * 120.00272 * 56.54612 * 12 10 8 15 15 N 1.31515 * 119.99578 * 7.82722 * 14 12 10 16 16 Si 1.86796 * 120.00133 * 187.82688 * 14 12 10 17 17 H 1.48499 * 109.47190 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47068 * 120.00216 * 16 14 12 19 19 H 1.48503 * 109.47002 * 239.99785 * 16 14 12 20 20 C 1.50707 * 109.46956 * 213.68116 * 10 8 4 21 21 C 1.38232 * 119.99824 * 217.05751 * 20 10 8 22 22 C 1.38236 * 119.99554 * 179.81336 * 21 20 10 23 23 C 1.38238 * 120.00223 * 0.39745 * 22 21 20 24 24 C 1.38240 * 119.99730 * 359.85867 * 23 22 21 25 25 C 1.38228 * 120.00033 * 359.95514 * 24 23 22 26 26 H 1.08994 * 109.47101 * 299.99957 * 1 2 3 27 27 H 1.09001 * 109.46894 * 59.99638 * 1 2 3 28 28 H 1.09000 * 109.46896 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47356 * 240.00613 * 2 1 3 30 30 H 1.08995 * 109.47621 * 119.99879 * 2 1 3 31 31 H 1.08996 * 109.46866 * 60.00510 * 3 2 1 32 32 H 1.08992 * 109.47507 * 299.99882 * 3 2 1 33 33 H 1.09006 * 109.46710 * 24.81662 * 5 4 3 34 34 H 1.08990 * 109.47129 * 144.81707 * 5 4 3 35 35 H 1.09000 * 109.47182 * 184.99692 * 6 5 4 36 36 H 1.08998 * 109.47064 * 304.99878 * 6 5 4 37 37 H 0.96706 * 113.99985 * 180.02562 * 7 6 5 38 38 H 0.97008 * 120.00012 * 180.02562 * 15 14 12 39 39 H 1.07992 * 120.00335 * 359.97438 * 21 20 10 40 40 H 1.07995 * 120.00239 * 180.22849 * 22 21 20 41 41 H 1.07992 * 120.00221 * 179.83148 * 23 22 21 42 42 H 1.08005 * 119.99780 * 179.97438 * 24 23 22 43 43 H 1.08005 * 119.99876 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.2371 1.4427 1.2695 6 6 4.6047 2.8794 1.6461 7 8 3.4124 3.6260 1.8973 8 6 4.1793 1.4425 -1.1664 9 8 3.5761 1.5256 -2.2153 10 6 5.6828 1.3390 -1.1679 11 1 6.0749 1.7318 -0.2299 12 6 6.0867 -0.1052 -1.3157 13 1 6.7198 -0.5676 -0.5730 14 6 5.6435 -0.8380 -2.3964 15 7 4.9987 -0.2416 -3.3752 16 14 5.9590 -2.6776 -2.4701 17 1 6.6993 -3.1020 -1.2548 18 1 4.6632 -3.3997 -2.5384 19 1 6.7658 -2.9935 -3.6762 20 6 6.2400 2.1368 -2.3186 21 6 7.3411 1.6717 -3.0130 22 6 7.8498 2.4017 -4.0710 23 6 7.2625 3.6007 -4.4293 24 6 6.1647 4.0683 -3.7315 25 6 5.6536 3.3366 -2.6760 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 3.6106 1.0115 2.0504 34 1 5.1461 0.8507 1.1646 35 1 5.2249 2.8727 2.5424 36 1 5.1559 3.3401 0.8263 37 1 3.5700 4.5482 2.1418 38 1 4.6865 -0.7571 -4.1353 39 1 7.8022 0.7369 -2.7307 40 1 8.7078 2.0366 -4.6159 41 1 7.6617 4.1722 -5.2541 42 1 5.7061 5.0053 -4.0112 43 1 4.7956 3.7018 -2.1311 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594211246.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:08 Heat of formation + Delta-G solvation = -58.428545 kcal Electronic energy + Delta-G solvation = -24765.476019 eV Core-core repulsion = 21389.786406 eV Total energy + Delta-G solvation = -3375.689612 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.24787 -37.76341 -36.52614 -34.85668 -33.48084 -32.69548 -30.77500 -29.71289 -28.67511 -27.47183 -25.42646 -23.63211 -22.43441 -21.41927 -21.20389 -20.13296 -18.08281 -17.38769 -16.61400 -15.92162 -15.77504 -15.12914 -14.68185 -14.38571 -14.15267 -13.87305 -13.73273 -13.48244 -13.10817 -12.83122 -12.47527 -12.31817 -12.09292 -11.87210 -11.64741 -11.55453 -11.40769 -11.20185 -10.97445 -10.87200 -10.79342 -10.66391 -10.37125 -10.13121 -10.03976 -9.87276 -9.55662 -9.34766 -8.56144 -8.13569 -7.75994 -7.59672 -7.36713 -5.96945 -4.17237 2.54461 2.60157 3.25119 3.35231 3.35777 4.00383 4.21223 4.40149 4.52913 4.98203 5.23916 5.40007 5.42969 5.51624 5.54602 5.60952 5.73587 5.84749 5.88740 5.94803 6.04290 6.05771 6.14636 6.22538 6.30143 6.34730 6.36810 6.49727 6.65236 6.66732 6.79015 6.82903 6.86017 7.15337 7.19494 7.52727 7.58963 7.65364 7.76136 7.78042 7.84864 8.16231 8.27984 8.55261 8.84902 9.47519 9.78226 10.97505 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011776 B = 0.007872 C = 0.005824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.046936 B = 3556.209929 C = 4806.871846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.128 3.872 4 N -0.624 5.624 5 C 0.118 3.882 6 C 0.055 3.945 7 O -0.569 6.569 8 C 0.524 3.476 9 O -0.504 6.504 10 C 0.063 3.937 11 H 0.048 0.952 12 C -0.546 4.546 13 H 0.065 0.935 14 C 0.075 3.925 15 N -0.810 5.810 16 Si 0.878 3.122 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.283 1.283 20 C -0.001 4.001 21 C -0.070 4.070 22 C -0.140 4.140 23 C -0.149 4.149 24 C -0.137 4.137 25 C -0.116 4.116 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.047 0.953 36 H 0.050 0.950 37 H 0.371 0.629 38 H 0.261 0.739 39 H 0.125 0.875 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.694 5.530 8.277 9.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C 0.004 3.996 4 N -0.360 5.360 5 C -0.006 4.006 6 C -0.024 4.024 7 O -0.373 6.373 8 C 0.314 3.686 9 O -0.375 6.375 10 C 0.041 3.959 11 H 0.066 0.934 12 C -0.583 4.583 13 H 0.083 0.917 14 C -0.135 4.135 15 N -0.440 5.440 16 Si 0.706 3.294 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.209 1.209 20 C -0.002 4.002 21 C -0.087 4.087 22 C -0.159 4.159 23 C -0.167 4.167 24 C -0.155 4.155 25 C -0.134 4.134 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.118 0.882 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.216 0.784 38 H 0.071 0.929 39 H 0.143 0.857 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.407 4.979 7.294 8.942 hybrid contribution 0.232 -0.726 -0.075 0.766 sum -1.175 4.253 7.219 8.460 Atomic orbital electron populations 1.21672 0.96237 1.01050 1.01312 1.21908 0.94999 0.98654 1.02327 1.21178 0.81250 0.95335 1.01832 1.48001 1.05161 1.77015 1.05802 1.21460 0.98563 0.93790 0.86822 1.22878 0.86761 0.93982 0.98782 1.86519 1.32409 1.26272 1.92126 1.21426 0.91202 0.73953 0.81999 1.90622 1.70142 1.46371 1.30408 1.17961 0.88327 0.96716 0.92847 0.93388 1.20551 1.34466 0.93682 1.09636 0.91661 1.25066 0.94972 0.97880 0.95604 1.70236 1.32537 1.34560 1.06666 0.86749 0.78054 0.86510 0.78123 1.19605 1.21046 1.20932 1.19910 0.92749 0.91217 0.96333 1.21001 0.95896 0.98129 0.93724 1.20978 1.00427 0.95738 0.98709 1.20740 0.98082 0.97430 1.00443 1.20783 0.97524 0.99643 0.97519 1.20871 0.98815 0.95710 0.97987 0.93179 0.92840 0.93214 0.91442 0.92651 0.91550 0.91114 0.91102 0.88229 0.93486 0.93154 0.78376 0.92900 0.85747 0.88004 0.88197 0.88184 0.88283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.91 37.16 0.37 -1.69 16 2 C -0.14 -2.44 6.26 -26.73 -0.17 -2.61 16 3 C 0.13 2.33 5.34 -4.03 -0.02 2.31 16 4 N -0.62 -12.31 2.43 -173.69 -0.42 -12.74 16 5 C 0.12 1.90 5.40 -4.04 -0.02 1.87 16 6 C 0.05 0.75 7.08 37.16 0.26 1.01 16 7 O -0.57 -7.60 13.07 -35.23 -0.46 -8.06 16 8 C 0.52 12.42 5.25 -10.98 -0.06 12.36 16 9 O -0.50 -13.87 12.96 5.55 0.07 -13.80 16 10 C 0.06 1.46 2.05 -94.07 -0.19 1.27 16 11 H 0.05 1.00 5.38 -51.93 -0.28 0.72 16 12 C -0.55 -13.65 7.07 -34.44 -0.24 -13.89 16 13 H 0.07 1.58 7.82 -52.49 -0.41 1.17 16 14 C 0.08 1.98 4.51 -17.82 -0.08 1.90 16 15 N -0.81 -22.83 9.75 55.43 0.54 -22.29 16 16 Si 0.88 20.51 29.54 -169.99 -5.02 15.49 16 17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 C 0.00 -0.02 4.21 -104.62 -0.44 -0.46 16 21 C -0.07 -1.60 8.35 -39.58 -0.33 -1.93 16 22 C -0.14 -2.90 10.05 -39.58 -0.40 -3.29 16 23 C -0.15 -2.92 10.05 -39.58 -0.40 -3.32 16 24 C -0.14 -2.79 10.05 -39.58 -0.40 -3.19 16 25 C -0.12 -2.61 8.51 -39.58 -0.34 -2.95 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 1.10 7.61 -51.93 -0.40 0.70 16 32 H 0.07 1.44 7.36 -51.93 -0.38 1.05 16 33 H 0.07 1.03 8.03 -51.93 -0.42 0.61 16 34 H 0.10 1.64 6.47 -51.93 -0.34 1.31 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.05 0.75 7.41 -51.93 -0.39 0.36 16 37 H 0.37 3.25 9.12 45.56 0.42 3.67 16 38 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.12 2.93 6.64 -52.49 -0.35 2.58 16 40 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 41 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 42 H 0.10 1.78 8.06 -52.48 -0.42 1.35 16 43 H 0.10 2.24 7.11 -52.48 -0.37 1.87 16 LS Contribution 347.47 15.07 5.24 5.24 Total: -1.00 -31.48 347.47 -8.36 -39.84 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -5.85 Total: 8.94 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: -2.45 Total: -12.61 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: 0.12 Total: -35.03 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.39 Total: -21.86 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.48 -8.36 -39.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594211246.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.587 kcal (2) G-P(sol) polarization free energy of solvation -31.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds