Wall clock time and date at job start Tue Mar 31 2020 06:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46840 * 2 1 4 4 N 1.46506 * 109.46871 * 179.97438 * 3 2 1 5 5 C 1.46497 * 120.00623 * 270.00260 * 4 3 2 6 6 C 1.53000 * 109.47123 * 264.82090 * 5 4 3 7 7 O 1.42902 * 109.47131 * 64.99429 * 6 5 4 8 8 C 1.34781 * 119.99605 * 90.00395 * 4 3 2 9 9 O 1.21285 * 120.00023 * 4.54378 * 8 4 3 10 10 C 1.50700 * 119.99931 * 184.54726 * 8 4 3 11 11 H 1.08994 * 109.47235 * 333.68035 * 10 8 4 12 12 C 1.50698 * 109.47073 * 93.68433 * 10 8 4 13 13 H 1.07995 * 119.99923 * 236.81714 * 12 10 8 14 14 C 1.37880 * 120.00272 * 56.54612 * 12 10 8 15 15 N 1.31515 * 119.99578 * 7.82722 * 14 12 10 16 16 Si 1.86796 * 120.00133 * 187.82688 * 14 12 10 17 17 H 1.48499 * 109.47190 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47068 * 120.00216 * 16 14 12 19 19 H 1.48503 * 109.47002 * 239.99785 * 16 14 12 20 20 C 1.50707 * 109.46956 * 213.68116 * 10 8 4 21 21 C 1.38232 * 119.99824 * 217.05751 * 20 10 8 22 22 C 1.38236 * 119.99554 * 179.81336 * 21 20 10 23 23 C 1.38238 * 120.00223 * 0.39745 * 22 21 20 24 24 C 1.38240 * 119.99730 * 359.85867 * 23 22 21 25 25 C 1.38228 * 120.00033 * 359.95514 * 24 23 22 26 26 H 1.08994 * 109.47101 * 299.99957 * 1 2 3 27 27 H 1.09001 * 109.46894 * 59.99638 * 1 2 3 28 28 H 1.09000 * 109.46896 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47356 * 240.00613 * 2 1 3 30 30 H 1.08995 * 109.47621 * 119.99879 * 2 1 3 31 31 H 1.08996 * 109.46866 * 60.00510 * 3 2 1 32 32 H 1.08992 * 109.47507 * 299.99882 * 3 2 1 33 33 H 1.09006 * 109.46710 * 24.81662 * 5 4 3 34 34 H 1.08990 * 109.47129 * 144.81707 * 5 4 3 35 35 H 1.09000 * 109.47182 * 184.99692 * 6 5 4 36 36 H 1.08998 * 109.47064 * 304.99878 * 6 5 4 37 37 H 0.96706 * 113.99985 * 180.02562 * 7 6 5 38 38 H 0.97008 * 120.00012 * 180.02562 * 15 14 12 39 39 H 1.07992 * 120.00335 * 359.97438 * 21 20 10 40 40 H 1.07995 * 120.00239 * 180.22849 * 22 21 20 41 41 H 1.07992 * 120.00221 * 179.83148 * 23 22 21 42 42 H 1.08005 * 119.99780 * 179.97438 * 24 23 22 43 43 H 1.08005 * 119.99876 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.2371 1.4427 1.2695 6 6 4.6047 2.8794 1.6461 7 8 3.4124 3.6260 1.8973 8 6 4.1793 1.4425 -1.1664 9 8 3.5761 1.5256 -2.2153 10 6 5.6828 1.3390 -1.1679 11 1 6.0749 1.7318 -0.2299 12 6 6.0867 -0.1052 -1.3157 13 1 6.7198 -0.5676 -0.5730 14 6 5.6435 -0.8380 -2.3964 15 7 4.9987 -0.2416 -3.3752 16 14 5.9590 -2.6776 -2.4701 17 1 6.6993 -3.1020 -1.2548 18 1 4.6632 -3.3997 -2.5384 19 1 6.7658 -2.9935 -3.6762 20 6 6.2400 2.1368 -2.3186 21 6 7.3411 1.6717 -3.0130 22 6 7.8498 2.4017 -4.0710 23 6 7.2625 3.6007 -4.4293 24 6 6.1647 4.0683 -3.7315 25 6 5.6536 3.3366 -2.6760 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 3.6106 1.0115 2.0504 34 1 5.1461 0.8507 1.1646 35 1 5.2249 2.8727 2.5424 36 1 5.1559 3.3401 0.8263 37 1 3.5700 4.5482 2.1418 38 1 4.6865 -0.7571 -4.1353 39 1 7.8022 0.7369 -2.7307 40 1 8.7078 2.0366 -4.6159 41 1 7.6617 4.1722 -5.2541 42 1 5.7061 5.0053 -4.0112 43 1 4.7956 3.7018 -2.1311 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594211246.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:07 Heat of formation + Delta-G solvation = -78.188607 kcal Electronic energy + Delta-G solvation = -24766.332879 eV Core-core repulsion = 21389.786406 eV Total energy + Delta-G solvation = -3376.546473 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.93646 -39.35581 -37.78767 -36.37179 -35.33603 -34.14374 -32.56982 -31.38528 -29.96857 -29.20566 -27.00003 -25.38665 -23.76014 -23.02306 -22.74341 -21.76364 -19.74853 -18.70372 -18.23129 -17.48240 -17.37567 -16.77401 -16.54656 -15.80118 -15.59129 -15.48695 -15.36405 -14.90702 -14.55243 -14.18654 -14.16148 -13.96288 -13.79224 -13.36391 -13.25921 -13.00431 -12.91618 -12.81633 -12.65950 -12.46116 -12.24939 -12.13396 -12.11094 -11.76027 -11.59279 -11.41216 -11.18000 -10.82056 -10.56230 -9.98913 -9.42786 -9.20379 -9.06676 -7.96391 -6.19532 0.87100 0.93995 1.36701 1.41940 1.49678 2.34972 2.46929 2.56233 3.25039 3.31776 3.51712 3.99536 4.15091 4.25810 4.32654 4.35387 4.36682 4.39641 4.45513 4.50731 4.63158 4.68471 4.75266 4.79876 4.86906 4.94940 4.99484 5.03147 5.08111 5.14573 5.15227 5.29577 5.39014 5.47572 5.54128 5.72205 5.88282 5.95498 6.01209 6.08373 6.42363 6.53038 6.71351 6.96128 7.05999 7.46561 8.01357 8.95711 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.011776 B = 0.007872 C = 0.005824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.046936 B = 3556.209929 C = 4806.871846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.133 4.133 3 C 0.131 3.869 4 N -0.624 5.624 5 C 0.109 3.891 6 C 0.064 3.936 7 O -0.583 6.583 8 C 0.524 3.476 9 O -0.552 6.552 10 C 0.058 3.942 11 H 0.066 0.934 12 C -0.542 4.542 13 H 0.070 0.930 14 C 0.036 3.964 15 N -0.841 5.841 16 Si 0.930 3.070 17 H -0.257 1.257 18 H -0.296 1.296 19 H -0.284 1.284 20 C -0.022 4.022 21 C -0.092 4.092 22 C -0.143 4.143 23 C -0.145 4.145 24 C -0.139 4.139 25 C -0.132 4.132 26 H 0.075 0.925 27 H 0.045 0.955 28 H 0.061 0.939 29 H 0.020 0.980 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.043 0.957 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.032 0.968 37 H 0.392 0.608 38 H 0.249 0.751 39 H 0.110 0.890 40 H 0.128 0.872 41 H 0.138 0.862 42 H 0.128 0.872 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.264 6.236 9.697 11.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.172 4.172 3 C 0.008 3.992 4 N -0.358 5.358 5 C -0.014 4.014 6 C -0.015 4.015 7 O -0.391 6.391 8 C 0.314 3.686 9 O -0.428 6.428 10 C 0.037 3.963 11 H 0.084 0.916 12 C -0.580 4.580 13 H 0.088 0.912 14 C -0.171 4.171 15 N -0.473 5.473 16 Si 0.757 3.243 17 H -0.180 1.180 18 H -0.223 1.223 19 H -0.210 1.210 20 C -0.023 4.023 21 C -0.110 4.110 22 C -0.161 4.161 23 C -0.163 4.163 24 C -0.157 4.157 25 C -0.151 4.151 26 H 0.094 0.906 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.039 0.961 30 H 0.086 0.914 31 H 0.111 0.889 32 H 0.061 0.939 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.101 0.899 36 H 0.050 0.950 37 H 0.241 0.759 38 H 0.058 0.942 39 H 0.128 0.872 40 H 0.146 0.854 41 H 0.156 0.844 42 H 0.146 0.854 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.957 5.697 8.787 10.516 hybrid contribution 0.110 -0.865 -0.441 0.977 sum -0.847 4.833 8.345 9.681 Atomic orbital electron populations 1.21624 0.93493 1.02177 1.02242 1.21826 0.97410 0.97467 1.00491 1.21227 0.80461 0.95902 1.01614 1.48025 1.05956 1.75642 1.06197 1.21725 0.98322 0.95930 0.85453 1.22693 0.87007 0.92117 0.99694 1.86446 1.32408 1.28028 1.92232 1.21427 0.91376 0.73384 0.82371 1.90585 1.70937 1.48826 1.32454 1.18023 0.88403 0.96003 0.93912 0.91570 1.20821 1.33531 0.94627 1.08991 0.91201 1.25632 0.95021 1.00957 0.95516 1.70426 1.34482 1.35265 1.07136 0.85936 0.77261 0.82687 0.78464 1.18028 1.22294 1.21044 1.20000 0.93391 0.91895 0.96994 1.20999 0.96483 0.98263 0.95220 1.21310 1.01028 0.95880 0.97857 1.21148 0.97264 0.97086 1.00822 1.21147 0.97639 1.00396 0.96523 1.20895 0.98875 0.96098 0.99201 0.90563 0.93553 0.92027 0.96148 0.91424 0.88942 0.93853 0.89000 0.88920 0.89886 0.94956 0.75924 0.94178 0.87201 0.85396 0.84405 0.85435 0.89375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 9.91 71.98 0.71 -3.02 16 2 C -0.13 -4.64 6.26 30.60 0.19 -4.45 16 3 C 0.13 4.80 5.34 86.38 0.46 5.26 16 4 N -0.62 -24.74 2.43 -821.80 -2.00 -26.73 16 5 C 0.11 3.34 5.40 86.38 0.47 3.81 16 6 C 0.06 1.61 7.08 71.98 0.51 2.11 16 7 O -0.58 -14.18 13.07 -148.98 -1.95 -16.13 16 8 C 0.52 25.55 5.25 87.66 0.46 26.01 16 9 O -0.55 -31.83 12.96 -3.05 -0.04 -31.87 16 10 C 0.06 2.74 2.05 -13.03 -0.03 2.72 16 11 H 0.07 2.78 5.38 -2.39 -0.01 2.77 16 12 C -0.54 -27.48 7.07 25.60 0.18 -27.30 16 13 H 0.07 3.39 7.82 -2.91 -0.02 3.36 16 14 C 0.04 1.91 4.51 84.66 0.38 2.29 16 15 N -0.84 -49.17 9.75 21.45 0.21 -48.96 16 16 Si 0.93 42.88 29.54 68.60 2.03 44.91 16 17 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 18 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 19 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 20 C -0.02 -1.05 4.21 -19.86 -0.08 -1.13 16 21 C -0.09 -4.25 8.35 22.27 0.19 -4.07 16 22 C -0.14 -5.72 10.05 22.27 0.22 -5.50 16 23 C -0.15 -5.39 10.05 22.27 0.22 -5.17 16 24 C -0.14 -5.52 10.05 22.27 0.22 -5.30 16 25 C -0.13 -6.06 8.51 22.27 0.19 -5.87 16 26 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.09 2.89 7.61 -2.39 -0.02 2.87 16 32 H 0.04 1.82 7.36 -2.39 -0.02 1.80 16 33 H 0.09 2.43 8.03 -2.38 -0.02 2.41 16 34 H 0.09 2.97 6.47 -2.39 -0.02 2.95 16 35 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.03 0.93 7.41 -2.39 -0.02 0.92 16 37 H 0.39 5.87 9.12 -74.05 -0.68 5.19 16 38 H 0.25 14.55 8.31 -92.70 -0.77 13.78 16 39 H 0.11 5.30 6.64 -2.91 -0.02 5.28 16 40 H 0.13 4.34 8.06 -2.91 -0.02 4.32 16 41 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 42 H 0.13 4.26 8.06 -2.91 -0.02 4.23 16 43 H 0.09 4.12 7.11 -2.91 -0.02 4.10 16 Total: -1.00 -70.45 347.47 2.88 -67.57 By element: Atomic # 1 Polarization: 30.51 SS G_CDS: 0.32 Total: 30.83 kcal Atomic # 6 Polarization: -23.91 SS G_CDS: 4.30 Total: -19.61 kcal Atomic # 7 Polarization: -73.90 SS G_CDS: -1.79 Total: -75.69 kcal Atomic # 8 Polarization: -46.02 SS G_CDS: -1.99 Total: -48.01 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -70.45 2.88 -67.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594211246.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.621 kcal (2) G-P(sol) polarization free energy of solvation -70.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds