Wall clock time and date at job start Tue Mar 31 2020 06:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47355 * 2 1 4 4 N 1.46499 * 109.47395 * 179.97438 * 3 2 1 5 5 C 1.46502 * 120.00213 * 270.00394 * 4 3 2 6 6 C 1.53004 * 109.47071 * 274.59663 * 5 4 3 7 7 O 1.42896 * 109.46976 * 66.00497 * 6 5 4 8 8 C 1.34780 * 119.99837 * 89.99909 * 4 3 2 9 9 O 1.21282 * 119.99856 * 5.45674 * 8 4 3 10 10 C 1.50694 * 120.00021 * 185.44930 * 8 4 3 11 11 H 1.09002 * 109.47007 * 52.18731 * 10 8 4 12 12 C 1.50700 * 109.47442 * 292.18504 * 10 8 4 13 13 H 1.08005 * 120.00021 * 125.50772 * 12 10 8 14 14 C 1.37873 * 119.99961 * 305.50493 * 12 10 8 15 15 N 1.31517 * 119.99841 * 357.18208 * 14 12 10 16 16 Si 1.86802 * 120.00222 * 177.17979 * 14 12 10 17 17 H 1.48497 * 109.46932 * 60.00017 * 16 14 12 18 18 H 1.48498 * 109.47205 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.46845 * 299.99967 * 16 14 12 20 20 C 1.50705 * 109.47399 * 172.18198 * 10 8 4 21 21 C 1.38229 * 120.00016 * 117.12795 * 20 10 8 22 22 C 1.38239 * 119.99849 * 180.02562 * 21 20 10 23 23 C 1.38229 * 119.99733 * 359.95254 * 22 21 20 24 24 C 1.38233 * 120.00715 * 0.02562 * 23 22 21 25 25 C 1.38236 * 119.99483 * 0.06591 * 24 23 22 26 26 H 1.09001 * 109.47513 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47460 * 300.00083 * 1 2 3 28 28 H 1.09012 * 109.46836 * 60.00082 * 1 2 3 29 29 H 1.09002 * 109.47000 * 239.99835 * 2 1 3 30 30 H 1.08997 * 109.46857 * 120.00374 * 2 1 3 31 31 H 1.09002 * 109.47201 * 59.99958 * 3 2 1 32 32 H 1.08997 * 109.47444 * 300.00015 * 3 2 1 33 33 H 1.08999 * 109.46953 * 34.59768 * 5 4 3 34 34 H 1.09001 * 109.47282 * 154.59698 * 5 4 3 35 35 H 1.08996 * 109.46724 * 186.00487 * 6 5 4 36 36 H 1.09002 * 109.46552 * 306.00806 * 6 5 4 37 37 H 0.96701 * 114.00127 * 179.97438 * 7 6 5 38 38 H 0.96998 * 119.99771 * 179.97438 * 15 14 12 39 39 H 1.07996 * 120.00261 * 359.97438 * 21 20 10 40 40 H 1.08006 * 119.99913 * 179.97438 * 22 21 20 41 41 H 1.08007 * 119.99645 * 179.72209 * 23 22 21 42 42 H 1.07996 * 120.00559 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.00066 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.2370 1.4425 1.2696 6 6 4.3917 2.8805 1.7691 7 8 3.1064 3.4115 2.0974 8 6 4.1794 1.4422 -1.1663 9 8 3.5775 1.5419 -2.2145 10 6 5.6812 1.3183 -1.1687 11 1 5.9751 0.4504 -0.5784 12 6 6.2888 2.5613 -0.5713 13 1 6.9781 2.4813 0.2564 14 6 5.9649 3.8006 -1.0813 15 7 5.1692 3.8949 -2.1242 16 14 6.6560 5.3456 -0.2911 17 1 8.1394 5.3103 -0.3494 18 1 6.1598 6.5396 -1.0213 19 1 6.2178 5.4152 1.1261 20 6 6.1693 1.1512 -2.5847 21 6 6.9948 2.1060 -3.1484 22 6 7.4421 1.9529 -4.4474 23 6 7.0647 0.8446 -5.1822 24 6 6.2395 -0.1104 -4.6184 25 6 5.7907 0.0436 -3.3201 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 3.6858 0.8591 2.0071 34 1 5.2227 1.0017 1.1206 35 1 5.0264 2.8910 2.6551 36 1 4.8476 3.4891 0.9882 37 1 3.1282 4.3220 2.4222 38 1 4.9410 4.7668 -2.4828 39 1 7.2896 2.9719 -2.5743 40 1 8.0868 2.6991 -4.8880 41 1 7.4105 0.7273 -6.1987 42 1 5.9443 -0.9761 -5.1927 43 1 5.1457 -0.7023 -2.8796 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594211249.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:11 Heat of formation + Delta-G solvation = -58.258473 kcal Electronic energy + Delta-G solvation = -24954.337242 eV Core-core repulsion = 21578.655004 eV Total energy + Delta-G solvation = -3375.682238 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.21333 -37.74353 -36.23922 -34.78874 -33.83444 -32.56051 -30.85934 -29.60702 -28.47243 -27.48718 -25.45555 -23.66934 -22.19806 -21.40731 -21.17290 -20.13763 -18.01861 -17.23471 -16.50457 -15.95779 -15.38579 -15.26619 -14.85625 -14.39276 -14.14431 -13.80561 -13.70667 -13.33021 -12.84509 -12.74013 -12.56859 -12.32633 -12.11436 -11.87120 -11.55904 -11.53265 -11.35189 -11.29826 -11.02155 -10.92794 -10.74905 -10.56685 -10.34814 -10.13929 -10.09083 -9.70832 -9.38653 -9.31782 -8.53495 -8.23920 -7.73292 -7.53372 -7.35849 -6.17115 -4.32776 2.52932 2.63876 3.09336 3.19723 3.22072 4.08628 4.14773 4.33852 4.87926 5.00884 5.05282 5.39841 5.46443 5.65833 5.79563 5.85477 5.89168 5.94513 5.97199 6.01089 6.05927 6.17175 6.24709 6.27657 6.37173 6.43668 6.49786 6.63481 6.68181 6.75469 6.82626 6.85712 6.89835 7.12255 7.24991 7.52629 7.59874 7.67578 7.73081 7.80886 8.12282 8.17747 8.27604 8.55531 8.78357 9.27158 9.76775 10.80519 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012670 B = 0.008383 C = 0.005595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.444759 B = 3339.320860 C = 5003.052228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.138 4.138 3 C 0.123 3.877 4 N -0.615 5.615 5 C 0.136 3.864 6 C 0.044 3.956 7 O -0.577 6.577 8 C 0.548 3.452 9 O -0.534 6.534 10 C 0.057 3.943 11 H 0.052 0.948 12 C -0.536 4.536 13 H 0.068 0.932 14 C 0.069 3.931 15 N -0.832 5.832 16 Si 0.877 3.123 17 H -0.272 1.272 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.017 4.017 21 C -0.048 4.048 22 C -0.150 4.150 23 C -0.143 4.143 24 C -0.144 4.144 25 C -0.117 4.117 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.096 0.904 35 H 0.034 0.966 36 H 0.089 0.911 37 H 0.366 0.634 38 H 0.267 0.733 39 H 0.137 0.863 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.210 -3.998 5.511 6.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.177 4.177 3 C -0.001 4.001 4 N -0.349 5.349 5 C 0.012 3.988 6 C -0.034 4.034 7 O -0.382 6.382 8 C 0.339 3.661 9 O -0.409 6.409 10 C 0.035 3.965 11 H 0.070 0.930 12 C -0.574 4.574 13 H 0.086 0.914 14 C -0.139 4.139 15 N -0.465 5.465 16 Si 0.704 3.296 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.200 1.200 20 C -0.018 4.018 21 C -0.066 4.066 22 C -0.169 4.169 23 C -0.161 4.161 24 C -0.162 4.162 25 C -0.135 4.135 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.114 0.886 35 H 0.052 0.948 36 H 0.107 0.893 37 H 0.211 0.789 38 H 0.077 0.923 39 H 0.154 0.846 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.827 -4.400 4.563 6.597 hybrid contribution 0.440 1.684 0.566 1.831 sum -1.387 -2.715 5.129 5.967 Atomic orbital electron populations 1.21669 0.96055 1.00983 1.01626 1.21904 0.95318 0.98848 1.01603 1.21223 0.81326 0.94909 1.02595 1.47708 1.04989 1.76263 1.05983 1.21282 0.97603 0.94551 0.85375 1.23174 0.83764 0.97449 0.98998 1.86411 1.31288 1.32353 1.88136 1.21025 0.90165 0.73034 0.81913 1.90541 1.70545 1.48393 1.31426 1.17941 0.89427 0.97691 0.91412 0.92987 1.20659 1.28855 0.89286 1.18566 0.91397 1.25058 0.95166 0.98923 0.94733 1.70154 1.31508 1.24731 1.20059 0.86938 0.79877 0.83171 0.79593 1.19770 1.21104 1.19975 1.19837 0.93721 0.91991 0.96244 1.21370 0.94095 0.97872 0.93285 1.21058 1.02175 0.97689 0.95946 1.20774 1.00753 0.95921 0.98683 1.20744 1.00504 0.99258 0.95741 1.20863 0.99585 0.98528 0.94559 0.93218 0.92974 0.92759 0.92146 0.92655 0.90846 0.91054 0.92603 0.88579 0.94792 0.89297 0.78850 0.92292 0.84562 0.88104 0.88227 0.88123 0.88313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 37.16 0.37 -1.57 16 2 C -0.14 -2.21 6.26 -26.74 -0.17 -2.38 16 3 C 0.12 2.33 5.28 -4.05 -0.02 2.31 16 4 N -0.62 -12.63 2.46 -173.69 -0.43 -13.06 16 5 C 0.14 2.41 5.36 -4.04 -0.02 2.39 16 6 C 0.04 0.79 6.97 37.16 0.26 1.05 16 7 O -0.58 -9.81 12.11 -35.23 -0.43 -10.23 16 8 C 0.55 13.07 5.53 -10.99 -0.06 13.01 16 9 O -0.53 -14.66 14.47 5.56 0.08 -14.58 16 10 C 0.06 1.30 1.87 -94.08 -0.18 1.13 16 11 H 0.05 1.10 7.21 -51.93 -0.37 0.73 16 12 C -0.54 -12.38 4.53 -34.44 -0.16 -12.54 16 13 H 0.07 1.50 7.82 -52.48 -0.41 1.09 16 14 C 0.07 1.66 2.50 -17.82 -0.04 1.62 16 15 N -0.83 -22.10 9.89 55.43 0.55 -21.56 16 16 Si 0.88 18.79 28.32 -169.99 -4.81 13.97 16 17 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 18 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.27 -5.61 7.10 56.52 0.40 -5.21 16 20 C -0.02 -0.40 4.40 -104.62 -0.46 -0.86 16 21 C -0.05 -1.14 7.75 -39.58 -0.31 -1.45 16 22 C -0.15 -3.20 10.05 -39.58 -0.40 -3.59 16 23 C -0.14 -2.84 10.05 -39.59 -0.40 -3.24 16 24 C -0.14 -2.93 10.05 -39.58 -0.40 -3.32 16 25 C -0.12 -2.60 8.80 -39.58 -0.35 -2.95 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 1.33 6.72 -51.93 -0.35 0.99 16 32 H 0.07 1.54 7.36 -51.93 -0.38 1.16 16 33 H 0.06 0.87 8.11 -51.93 -0.42 0.45 16 34 H 0.10 1.66 5.68 -51.93 -0.30 1.37 16 35 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 1.86 3.81 -51.93 -0.20 1.66 16 37 H 0.37 4.82 9.12 45.56 0.42 5.24 16 38 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 39 H 0.14 3.38 5.02 -52.49 -0.26 3.11 16 40 H 0.10 1.90 8.06 -52.48 -0.42 1.48 16 41 H 0.10 1.67 8.06 -52.48 -0.42 1.25 16 42 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 43 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 338.10 15.07 5.10 5.10 Total: -1.00 -29.33 338.10 -7.91 -37.25 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -5.64 Total: 13.51 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -2.33 Total: -10.41 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: 0.12 Total: -34.62 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.35 Total: -24.81 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -4.81 Total: 13.97 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.33 -7.91 -37.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594211249.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.009 kcal (2) G-P(sol) polarization free energy of solvation -29.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds