Wall clock time and date at job start Tue Mar 31 2020 06:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47355 * 2 1 4 4 N 1.46499 * 109.47395 * 179.97438 * 3 2 1 5 5 C 1.46502 * 120.00213 * 270.00394 * 4 3 2 6 6 C 1.53004 * 109.47071 * 274.59663 * 5 4 3 7 7 O 1.42896 * 109.46976 * 66.00497 * 6 5 4 8 8 C 1.34780 * 119.99837 * 89.99909 * 4 3 2 9 9 O 1.21282 * 119.99856 * 5.45674 * 8 4 3 10 10 C 1.50694 * 120.00021 * 185.44930 * 8 4 3 11 11 H 1.09002 * 109.47007 * 52.18731 * 10 8 4 12 12 C 1.50700 * 109.47442 * 292.18504 * 10 8 4 13 13 H 1.08005 * 120.00021 * 125.50772 * 12 10 8 14 14 C 1.37873 * 119.99961 * 305.50493 * 12 10 8 15 15 N 1.31517 * 119.99841 * 357.18208 * 14 12 10 16 16 Si 1.86802 * 120.00222 * 177.17979 * 14 12 10 17 17 H 1.48497 * 109.46932 * 60.00017 * 16 14 12 18 18 H 1.48498 * 109.47205 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.46845 * 299.99967 * 16 14 12 20 20 C 1.50705 * 109.47399 * 172.18198 * 10 8 4 21 21 C 1.38229 * 120.00016 * 117.12795 * 20 10 8 22 22 C 1.38239 * 119.99849 * 180.02562 * 21 20 10 23 23 C 1.38229 * 119.99733 * 359.95254 * 22 21 20 24 24 C 1.38233 * 120.00715 * 0.02562 * 23 22 21 25 25 C 1.38236 * 119.99483 * 0.06591 * 24 23 22 26 26 H 1.09001 * 109.47513 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47460 * 300.00083 * 1 2 3 28 28 H 1.09012 * 109.46836 * 60.00082 * 1 2 3 29 29 H 1.09002 * 109.47000 * 239.99835 * 2 1 3 30 30 H 1.08997 * 109.46857 * 120.00374 * 2 1 3 31 31 H 1.09002 * 109.47201 * 59.99958 * 3 2 1 32 32 H 1.08997 * 109.47444 * 300.00015 * 3 2 1 33 33 H 1.08999 * 109.46953 * 34.59768 * 5 4 3 34 34 H 1.09001 * 109.47282 * 154.59698 * 5 4 3 35 35 H 1.08996 * 109.46724 * 186.00487 * 6 5 4 36 36 H 1.09002 * 109.46552 * 306.00806 * 6 5 4 37 37 H 0.96701 * 114.00127 * 179.97438 * 7 6 5 38 38 H 0.96998 * 119.99771 * 179.97438 * 15 14 12 39 39 H 1.07996 * 120.00261 * 359.97438 * 21 20 10 40 40 H 1.08006 * 119.99913 * 179.97438 * 22 21 20 41 41 H 1.08007 * 119.99645 * 179.72209 * 23 22 21 42 42 H 1.07996 * 120.00559 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.00066 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.2370 1.4425 1.2696 6 6 4.3917 2.8805 1.7691 7 8 3.1064 3.4115 2.0974 8 6 4.1794 1.4422 -1.1663 9 8 3.5775 1.5419 -2.2145 10 6 5.6812 1.3183 -1.1687 11 1 5.9751 0.4504 -0.5784 12 6 6.2888 2.5613 -0.5713 13 1 6.9781 2.4813 0.2564 14 6 5.9649 3.8006 -1.0813 15 7 5.1692 3.8949 -2.1242 16 14 6.6560 5.3456 -0.2911 17 1 8.1394 5.3103 -0.3494 18 1 6.1598 6.5396 -1.0213 19 1 6.2178 5.4152 1.1261 20 6 6.1693 1.1512 -2.5847 21 6 6.9948 2.1060 -3.1484 22 6 7.4421 1.9529 -4.4474 23 6 7.0647 0.8446 -5.1822 24 6 6.2395 -0.1104 -4.6184 25 6 5.7907 0.0436 -3.3201 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 3.6858 0.8591 2.0071 34 1 5.2227 1.0017 1.1206 35 1 5.0264 2.8910 2.6551 36 1 4.8476 3.4891 0.9882 37 1 3.1282 4.3220 2.4222 38 1 4.9410 4.7668 -2.4828 39 1 7.2896 2.9719 -2.5743 40 1 8.0868 2.6991 -4.8880 41 1 7.4105 0.7273 -6.1987 42 1 5.9443 -0.9761 -5.1927 43 1 5.1457 -0.7023 -2.8796 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594211249.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:10 Heat of formation + Delta-G solvation = -76.459076 kcal Electronic energy + Delta-G solvation = -24955.126479 eV Core-core repulsion = 21578.655004 eV Total energy + Delta-G solvation = -3376.471475 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.92773 -39.37230 -37.72795 -36.31403 -35.62067 -33.99225 -32.60169 -31.28527 -29.91797 -29.17957 -27.00644 -25.37487 -23.68866 -22.94524 -22.72084 -21.74976 -19.71280 -18.84068 -18.02955 -17.56647 -17.10471 -16.85450 -16.61333 -15.94125 -15.56038 -15.39875 -15.31337 -14.89629 -14.37740 -14.19361 -14.12628 -13.96679 -13.74246 -13.53524 -13.08361 -13.00670 -12.83122 -12.78548 -12.64244 -12.49264 -12.16545 -12.09612 -11.97128 -11.80194 -11.54814 -11.39152 -11.13350 -10.78898 -10.31702 -10.08799 -9.41091 -9.17245 -9.05802 -8.02576 -6.20836 0.85364 0.96661 1.38793 1.44730 1.49377 2.34091 2.45021 2.63990 3.20985 3.33673 3.60604 4.05972 4.20390 4.30685 4.35372 4.39299 4.42989 4.50177 4.50909 4.57145 4.69452 4.71486 4.81605 4.82985 4.99302 5.00500 5.06148 5.10412 5.17975 5.18648 5.31540 5.36469 5.42106 5.45445 5.59110 5.70477 5.87805 5.97994 6.01691 6.14645 6.44566 6.54452 6.75561 6.94729 7.07074 7.41877 7.98727 8.93700 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012670 B = 0.008383 C = 0.005595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.444759 B = 3339.320860 C = 5003.052228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.128 4.128 3 C 0.126 3.874 4 N -0.615 5.615 5 C 0.130 3.870 6 C 0.046 3.954 7 O -0.587 6.587 8 C 0.547 3.453 9 O -0.581 6.581 10 C 0.051 3.949 11 H 0.064 0.936 12 C -0.522 4.522 13 H 0.078 0.922 14 C 0.040 3.960 15 N -0.869 5.869 16 Si 0.925 3.075 17 H -0.269 1.269 18 H -0.303 1.303 19 H -0.255 1.255 20 C -0.041 4.041 21 C -0.072 4.072 22 C -0.159 4.159 23 C -0.141 4.141 24 C -0.145 4.145 25 C -0.134 4.134 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.043 0.957 29 H 0.036 0.964 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.034 0.966 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.383 0.617 38 H 0.253 0.747 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.137 0.863 42 H 0.132 0.868 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.920 -4.936 6.740 8.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.167 4.167 3 C 0.003 3.997 4 N -0.348 5.348 5 C 0.007 3.993 6 C -0.032 4.032 7 O -0.394 6.394 8 C 0.338 3.662 9 O -0.460 6.460 10 C 0.029 3.971 11 H 0.082 0.918 12 C -0.560 4.560 13 H 0.096 0.904 14 C -0.164 4.164 15 N -0.503 5.503 16 Si 0.751 3.249 17 H -0.194 1.194 18 H -0.229 1.229 19 H -0.179 1.179 20 C -0.042 4.042 21 C -0.090 4.090 22 C -0.177 4.177 23 C -0.158 4.158 24 C -0.163 4.163 25 C -0.152 4.152 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.053 0.947 33 H 0.102 0.898 34 H 0.117 0.883 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.231 0.769 38 H 0.062 0.938 39 H 0.135 0.865 40 H 0.139 0.861 41 H 0.155 0.845 42 H 0.150 0.850 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.525 -5.342 5.867 8.080 hybrid contribution 0.354 1.946 0.202 1.989 sum -1.171 -3.396 6.069 7.052 Atomic orbital electron populations 1.21638 0.93807 1.02455 1.01888 1.21805 0.97229 0.96405 1.01277 1.21262 0.80547 0.96726 1.01180 1.47784 1.05751 1.75007 1.06227 1.21515 0.97937 0.95373 0.84506 1.23030 0.84342 0.96608 0.99210 1.86363 1.30936 1.33866 1.88227 1.21147 0.90461 0.72444 0.82138 1.90502 1.71359 1.50795 1.33301 1.18032 0.89142 0.98151 0.91742 0.91763 1.20822 1.27962 0.89227 1.17972 0.90430 1.25514 0.95105 1.01112 0.94699 1.70350 1.33870 1.24010 1.22052 0.86168 0.79255 0.79831 0.79647 1.19426 1.22948 1.17903 1.20013 0.94437 0.92835 0.96948 1.21319 0.95494 0.97611 0.94565 1.21353 1.02247 0.98808 0.95258 1.21174 0.99748 0.94805 1.00108 1.21146 0.99679 1.00325 0.95107 1.21024 1.00083 0.98396 0.95704 0.91132 0.91477 0.93761 0.94461 0.90833 0.89773 0.94726 0.89845 0.88331 0.91909 0.92460 0.76905 0.93751 0.86461 0.86124 0.84518 0.84963 0.88203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 9.91 71.98 0.71 -2.78 16 2 C -0.13 -3.99 6.26 30.59 0.19 -3.80 16 3 C 0.13 4.77 5.28 86.38 0.46 5.23 16 4 N -0.61 -25.18 2.46 -821.82 -2.02 -27.21 16 5 C 0.13 4.37 5.36 86.38 0.46 4.83 16 6 C 0.05 1.55 6.97 71.98 0.50 2.05 16 7 O -0.59 -18.71 12.11 -148.98 -1.80 -20.51 16 8 C 0.55 26.63 5.53 87.65 0.49 27.11 16 9 O -0.58 -33.15 14.47 -3.04 -0.04 -33.20 16 10 C 0.05 2.36 1.87 -13.03 -0.02 2.33 16 11 H 0.06 2.74 7.21 -2.39 -0.02 2.72 16 12 C -0.52 -24.17 4.53 25.60 0.12 -24.05 16 13 H 0.08 3.36 7.82 -2.91 -0.02 3.34 16 14 C 0.04 1.93 2.50 84.65 0.21 2.15 16 15 N -0.87 -47.79 9.89 21.45 0.21 -47.57 16 16 Si 0.93 38.75 28.32 68.60 1.94 40.69 16 17 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 18 H -0.30 -13.47 7.11 99.48 0.71 -12.76 16 19 H -0.25 -9.75 7.10 99.48 0.71 -9.04 16 20 C -0.04 -2.00 4.40 -19.87 -0.09 -2.09 16 21 C -0.07 -3.45 7.75 22.27 0.17 -3.28 16 22 C -0.16 -6.64 10.05 22.27 0.22 -6.42 16 23 C -0.14 -5.30 10.05 22.27 0.22 -5.07 16 24 C -0.14 -5.65 10.05 22.27 0.22 -5.42 16 25 C -0.13 -5.97 8.80 22.27 0.20 -5.78 16 26 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 29 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.08 2.97 6.72 -2.39 -0.02 2.96 16 32 H 0.03 1.55 7.36 -2.39 -0.02 1.53 16 33 H 0.08 2.36 8.11 -2.39 -0.02 2.34 16 34 H 0.10 3.25 5.68 -2.39 -0.01 3.24 16 35 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.06 2.32 3.81 -2.39 -0.01 2.31 16 37 H 0.38 9.26 9.12 -74.06 -0.68 8.58 16 38 H 0.25 14.07 8.31 -92.71 -0.77 13.29 16 39 H 0.12 5.99 5.02 -2.91 -0.01 5.97 16 40 H 0.12 4.43 8.06 -2.91 -0.02 4.40 16 41 H 0.14 4.10 8.06 -2.91 -0.02 4.07 16 42 H 0.13 4.24 8.06 -2.91 -0.02 4.21 16 43 H 0.10 4.30 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -65.24 338.10 2.68 -62.55 By element: Atomic # 1 Polarization: 39.90 SS G_CDS: 0.33 Total: 40.23 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: 4.07 Total: -14.99 kcal Atomic # 7 Polarization: -72.97 SS G_CDS: -1.81 Total: -74.78 kcal Atomic # 8 Polarization: -51.86 SS G_CDS: -1.85 Total: -53.71 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 1.94 Total: 40.69 kcal Total: -65.24 2.68 -62.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594211249.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.906 kcal (2) G-P(sol) polarization free energy of solvation -65.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds