Wall clock time and date at job start Tue Mar 31 2020 07:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35896 * 117.00039 * 179.97438 * 3 2 1 5 5 C 1.38738 * 120.05353 * 359.72616 * 4 3 2 6 6 C 1.38148 * 119.94048 * 179.74738 * 5 4 3 7 7 C 1.38261 * 120.05800 * 0.50500 * 6 5 4 8 8 C 1.50703 * 119.94589 * 179.75166 * 7 6 5 9 9 C 1.50706 * 109.46541 * 270.01711 * 8 7 6 10 10 O 1.21281 * 120.00335 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99612 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99957 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47405 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.47649 * 179.97438 * 13 12 11 15 15 C 1.50689 * 109.47509 * 179.97438 * 14 13 12 16 16 H 1.07994 * 120.00225 * 0.02562 * 15 14 13 17 17 C 1.37883 * 120.00074 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99768 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99942 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47098 * 59.99974 * 19 17 15 21 21 H 1.48496 * 109.46888 * 179.97438 * 19 17 15 22 22 H 1.48490 * 109.47284 * 300.00093 * 19 17 15 23 23 C 1.38262 * 120.11048 * 359.76434 * 7 6 5 24 24 C 1.38145 * 120.05942 * 359.97438 * 23 7 6 25 25 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 26 26 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 27 27 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 29 29 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 30 30 H 1.07995 * 120.02746 * 359.97438 * 5 4 3 31 31 H 1.08004 * 119.97067 * 180.22662 * 6 5 4 32 32 H 1.08992 * 109.47037 * 30.01395 * 8 7 6 33 33 H 1.08998 * 109.46989 * 150.02347 * 8 7 6 34 34 H 0.97001 * 120.00252 * 0.02562 * 11 9 8 35 35 H 1.09004 * 109.47098 * 300.00436 * 12 11 9 36 36 H 1.09002 * 109.47139 * 60.00127 * 12 11 9 37 37 H 1.09004 * 109.47040 * 300.00094 * 13 12 11 38 38 H 1.09002 * 109.47177 * 59.99772 * 13 12 11 39 39 H 1.09004 * 109.46996 * 300.00145 * 14 13 12 40 40 H 1.09002 * 109.46997 * 59.99686 * 14 13 12 41 41 H 0.97005 * 119.99418 * 180.02562 * 18 17 15 42 42 H 1.08008 * 119.97547 * 179.97438 * 23 7 6 43 43 H 1.08000 * 120.03441 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3535 1.5255 0.0005 5 6 4.1997 0.4261 0.0068 6 6 5.5689 0.6099 0.0021 7 6 6.0961 1.8881 0.0016 8 6 7.5901 2.0856 0.0021 9 6 8.0875 2.1517 1.4232 10 8 7.3059 2.0481 2.3447 11 7 9.4011 2.3250 1.6699 12 6 9.8847 2.3887 3.0513 13 6 11.4015 2.5894 3.0520 14 6 11.9066 2.6566 4.4946 15 6 13.4005 2.8536 4.4952 16 1 13.9362 2.9243 3.5601 17 6 14.0836 2.9436 5.6895 18 7 13.4311 2.8580 6.8282 19 14 15.9357 3.1872 5.6902 20 1 16.2686 4.4538 4.9901 21 1 16.4257 3.2525 7.0904 22 1 16.5848 2.0496 4.9906 23 6 5.2549 2.9853 0.0010 24 6 3.8850 2.8070 0.0003 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 3.7884 -0.5724 0.0117 31 1 6.2281 -0.2456 0.0032 32 1 8.0671 1.2509 -0.5113 33 1 7.8338 3.0155 -0.5117 34 1 10.0263 2.4075 0.9329 35 1 9.4079 3.2235 3.5651 36 1 9.6407 1.4588 3.5650 37 1 11.8786 1.7548 2.5381 38 1 11.6452 3.5194 2.5384 39 1 11.4294 3.4913 5.0081 40 1 11.6629 1.7267 5.0085 41 1 13.9117 2.9217 7.6684 42 1 5.6690 3.9828 0.0011 43 1 3.2282 3.6644 0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171509607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:34 Heat of formation + Delta-G solvation = -76.835761 kcal Electronic energy + Delta-G solvation = -21565.493875 eV Core-core repulsion = 18189.006066 eV Total energy + Delta-G solvation = -3376.487809 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.45068 -39.45557 -37.71595 -35.36269 -33.31478 -32.85647 -31.68402 -31.10540 -30.91558 -27.66105 -26.11941 -24.32154 -23.14638 -22.30671 -21.42636 -20.69485 -19.80694 -18.49523 -16.83837 -16.48639 -16.37868 -16.29973 -15.87366 -15.31764 -14.95880 -14.57209 -14.42560 -14.08221 -13.73772 -13.69928 -13.49069 -13.37752 -12.94794 -12.29004 -12.24025 -12.09862 -11.95349 -11.88073 -11.66210 -11.57077 -10.99335 -10.93240 -10.88372 -10.72755 -10.62647 -9.86374 -9.85707 -9.37098 -9.13334 -9.11792 -8.74829 -8.37258 -8.22981 -6.01932 -4.05237 1.22136 1.26050 2.82688 2.93578 3.31740 3.34469 3.36694 3.39022 3.77156 4.44022 4.51220 4.54603 4.58395 4.69620 4.72065 4.86802 5.03510 5.06944 5.12786 5.19867 5.33634 5.34620 5.39613 5.44989 5.56722 5.64818 5.74407 5.78549 5.88101 6.10266 6.16924 6.19331 6.47106 6.50572 6.60213 6.61063 6.84404 7.00742 7.21571 7.63023 7.74521 7.75881 7.96661 8.37214 8.44991 9.01263 9.58857 11.09264 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.044498 B = 0.001986 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.094755 B =14092.095972 C =14339.453462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.318 6.318 4 C 0.126 3.874 5 C -0.207 4.207 6 C -0.065 4.065 7 C -0.099 4.099 8 C -0.099 4.099 9 C 0.506 3.494 10 O -0.536 6.536 11 N -0.729 5.729 12 C 0.116 3.884 13 C -0.120 4.120 14 C 0.023 3.977 15 C -0.524 4.524 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.894 3.106 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.065 4.065 24 C -0.151 4.151 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.126 0.874 31 H 0.123 0.877 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.398 0.602 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.262 0.738 42 H 0.128 0.872 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.363 -4.712 -18.970 28.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.233 6.233 4 C 0.081 3.919 5 C -0.226 4.226 6 C -0.083 4.083 7 C -0.100 4.100 8 C -0.139 4.139 9 C 0.291 3.709 10 O -0.412 6.412 11 N -0.380 5.380 12 C -0.006 4.006 13 C -0.158 4.158 14 C -0.014 4.014 15 C -0.562 4.562 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.532 5.532 19 Si 0.722 3.278 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.083 4.083 24 C -0.169 4.169 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.144 0.856 31 H 0.141 0.859 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.232 0.768 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.071 0.929 42 H 0.146 0.854 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -22.064 -4.649 -18.078 28.901 hybrid contribution 1.507 -0.106 -0.149 1.518 sum -20.557 -4.754 -18.227 27.882 Atomic orbital electron populations 1.21775 0.92777 1.02833 1.03518 1.22773 0.95824 0.82097 1.01434 1.86053 1.19228 1.29209 1.88777 1.18972 0.82078 0.94223 0.96640 1.21154 0.94232 0.97915 1.09278 1.20763 0.94302 0.96612 0.96606 1.19195 0.93912 0.93378 1.03494 1.20634 0.93213 1.04889 0.95193 1.20548 0.82434 0.76799 0.91091 1.90726 1.55156 1.49063 1.46302 1.46232 1.07791 1.73908 1.10052 1.21626 0.96233 1.01806 0.80952 1.21884 0.90993 1.00661 1.02310 1.19028 0.95782 0.97617 0.88995 1.21167 0.92643 1.50099 0.92292 0.92691 1.25036 0.98450 0.95319 0.95664 1.69960 1.35816 1.50166 0.97299 0.86632 0.85535 0.78695 0.76971 1.20248 1.21268 1.20254 1.20798 0.92130 0.98598 0.96788 1.20357 0.95091 0.94765 1.06719 0.91473 0.91567 0.90394 0.92099 0.91975 0.85647 0.85915 0.88163 0.88082 0.76844 0.91865 0.91891 0.92754 0.92737 0.96283 0.96301 0.92868 0.85436 0.85285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 10.28 37.16 0.38 -0.45 16 2 C 0.05 0.40 5.46 37.16 0.20 0.60 16 3 O -0.32 -3.43 10.14 -19.41 -0.20 -3.63 16 4 C 0.13 1.45 6.69 -39.21 -0.26 1.19 16 5 C -0.21 -2.23 9.04 -39.43 -0.36 -2.58 16 6 C -0.06 -0.72 9.69 -39.61 -0.38 -1.10 16 7 C -0.10 -1.13 4.37 -104.60 -0.46 -1.59 16 8 C -0.10 -0.98 5.83 -29.03 -0.17 -1.15 16 9 C 0.51 7.26 7.82 -10.98 -0.09 7.17 16 10 O -0.54 -10.17 16.03 5.56 0.09 -10.08 16 11 N -0.73 -10.11 5.56 -60.29 -0.33 -10.45 16 12 C 0.12 2.06 5.67 -4.04 -0.02 2.03 16 13 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 14 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 15 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 16 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 19 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 C -0.07 -0.73 9.69 -39.61 -0.38 -1.11 16 24 C -0.15 -1.71 9.99 -39.43 -0.39 -2.10 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.38 7.68 -51.93 -0.40 -0.02 16 29 H 0.06 0.44 7.65 -51.93 -0.40 0.04 16 30 H 0.13 1.07 6.30 -52.49 -0.33 0.74 16 31 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 32 H 0.10 0.75 8.08 -51.93 -0.42 0.33 16 33 H 0.10 0.75 8.08 -51.93 -0.42 0.33 16 34 H 0.40 4.26 8.47 -40.82 -0.35 3.92 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.13 1.20 8.06 -52.48 -0.42 0.77 16 43 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 364.99 15.07 5.50 5.50 Total: -1.00 -34.25 364.99 -8.78 -43.02 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -6.93 Total: -0.14 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: -2.62 Total: -14.55 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.40 Total: -36.58 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: -0.11 Total: -13.71 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.25 -8.78 -43.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171509607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.813 kcal (2) G-P(sol) polarization free energy of solvation -34.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds