Wall clock time and date at job start Tue Mar 31 2020 06:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 114.00245 * 2 1 4 4 C 1.52994 * 109.47473 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47241 * 305.00559 * 4 3 2 6 6 C 1.53005 * 109.46905 * 65.00000 * 4 3 2 7 7 C 1.52992 * 109.47475 * 184.99959 * 4 3 2 8 8 H 1.09001 * 109.47376 * 300.00517 * 7 4 3 9 9 C 1.53002 * 109.47682 * 179.97438 * 7 4 3 10 10 C 1.50704 * 109.47231 * 60.00035 * 7 4 3 11 11 O 1.21280 * 119.99517 * 8.13487 * 10 7 4 12 12 N 1.34776 * 120.00329 * 188.13467 * 10 7 4 13 13 C 1.37141 * 120.00058 * 4.21392 * 12 10 7 14 14 H 1.07995 * 120.00045 * 232.11482 * 13 12 10 15 15 C 1.38891 * 119.99707 * 52.11654 * 13 12 10 16 16 N 1.31418 * 119.99890 * 201.54639 * 15 13 12 17 17 Si 1.86804 * 119.99996 * 21.54428 * 15 13 12 18 18 H 1.48495 * 109.47113 * 87.09293 * 17 15 13 19 19 H 1.48499 * 109.46999 * 207.09891 * 17 15 13 20 20 H 1.48498 * 109.46978 * 327.09611 * 17 15 13 21 21 C 1.39790 * 119.99771 * 184.22071 * 12 10 7 22 22 C 1.38959 * 120.07687 * 276.67731 * 21 12 10 23 23 C 1.38082 * 119.91965 * 179.79780 * 22 21 12 24 24 C 1.38311 * 120.07645 * 0.45822 * 23 22 21 25 25 C 1.38305 * 120.15786 * 359.79319 * 24 23 22 26 26 C 1.38082 * 120.07761 * 359.97438 * 25 24 23 27 27 H 1.08999 * 109.47165 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47562 * 300.00351 * 1 2 3 29 29 H 1.09000 * 109.46803 * 60.00164 * 1 2 3 30 30 H 1.08999 * 109.46927 * 59.99573 * 3 2 1 31 31 H 1.08998 * 109.47168 * 300.00121 * 3 2 1 32 32 H 1.08999 * 109.47220 * 60.00341 * 6 4 3 33 33 H 1.09001 * 109.47203 * 300.00020 * 6 4 3 34 34 H 1.09004 * 109.46543 * 180.02562 * 6 4 3 35 35 H 1.08994 * 109.47425 * 185.36548 * 9 7 4 36 36 H 1.08996 * 109.47127 * 305.37393 * 9 7 4 37 37 H 1.09004 * 109.46691 * 65.37213 * 9 7 4 38 38 H 0.96999 * 119.99933 * 179.97438 * 16 15 13 39 39 H 1.07999 * 120.03865 * 0.02562 * 22 21 12 40 40 H 1.08002 * 119.95795 * 180.23212 * 23 22 21 41 41 H 1.08006 * 119.91731 * 179.77283 * 24 23 22 42 42 H 1.08005 * 119.96060 * 179.97438 * 25 24 23 43 43 H 1.08002 * 120.03672 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8508 0.5685 0.8426 6 6 3.9962 0.5364 -1.3065 7 6 4.1573 2.5769 0.1263 8 1 3.8419 3.1931 -0.7156 9 6 5.6825 2.4561 0.1276 10 6 3.7034 3.2154 1.4138 11 8 3.0789 2.5659 2.2255 12 7 3.9916 4.5082 1.6630 13 6 4.6216 5.2665 0.7097 14 1 5.5146 5.8188 0.9623 15 6 4.1110 5.3242 -0.5807 16 7 4.8897 5.6726 -1.5804 17 14 2.3177 4.9064 -0.8952 18 1 1.4865 6.1232 -0.7122 19 1 2.1625 4.4051 -2.2844 20 1 1.8785 3.8586 0.0611 21 6 3.6483 5.0761 2.8934 22 6 2.3623 5.5590 3.1030 23 6 2.0256 6.1155 4.3210 24 6 2.9693 6.2012 5.3286 25 6 4.2517 5.7263 5.1217 26 6 4.5940 5.1642 3.9078 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6887 1.8464 -0.8899 32 1 3.6809 1.1526 -2.1485 33 1 3.5532 -0.4555 -1.3960 34 1 5.0828 0.4500 -1.3057 35 1 6.1244 3.4351 0.3125 36 1 5.9915 1.7641 0.9110 37 1 6.0182 2.0829 -0.8400 38 1 4.5332 5.7125 -2.4817 39 1 1.6261 5.4958 2.3154 40 1 1.0252 6.4877 4.4858 41 1 2.7042 6.6403 6.2790 42 1 4.9862 5.7951 5.9105 43 1 5.5957 4.7939 3.7468 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361715708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:25 Heat of formation + Delta-G solvation = -45.220066 kcal Electronic energy + Delta-G solvation = -24851.875455 eV Core-core repulsion = 21476.758605 eV Total energy + Delta-G solvation = -3375.116850 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.04742 -38.34797 -37.32605 -35.01561 -34.80917 -32.27304 -30.40704 -30.08641 -28.74246 -27.00057 -25.70314 -24.80530 -23.55452 -22.06759 -21.91354 -20.28408 -18.83354 -17.82715 -16.71573 -16.00277 -15.75505 -15.59906 -15.23136 -14.87007 -14.77085 -14.30093 -13.82444 -13.47921 -13.21394 -13.13933 -12.93306 -12.71329 -12.56089 -12.18980 -11.95558 -11.68826 -11.50128 -11.37036 -11.08421 -11.04641 -10.98572 -10.81536 -10.67949 -10.61047 -10.24017 -10.08722 -9.60731 -9.39375 -9.06806 -8.61183 -8.42078 -8.12835 -7.79091 -6.62600 -4.36353 1.90233 1.92371 2.96548 3.08703 3.15755 3.62828 3.96477 4.11661 4.22934 4.38877 4.75729 5.32847 5.37363 5.41771 5.43935 5.47697 5.52544 5.56086 5.61246 5.78604 5.83460 5.94506 5.95290 6.03437 6.07589 6.14841 6.17467 6.24737 6.39074 6.47755 6.52423 6.54160 6.56985 6.69228 6.85000 6.91330 6.95751 7.18231 7.20374 7.33123 7.51799 7.56538 7.87472 8.36313 8.83122 9.12313 9.59687 10.45619 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014112 B = 0.007196 C = 0.006171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.661198 B = 3890.185235 C = 4536.196531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.058 3.942 4 C -0.072 4.072 5 H 0.083 0.917 6 C -0.143 4.143 7 C -0.087 4.087 8 H 0.090 0.910 9 C -0.131 4.131 10 C 0.507 3.493 11 O -0.576 6.576 12 N -0.445 5.445 13 C -0.347 4.347 14 H 0.101 0.899 15 C 0.085 3.915 16 N -0.846 5.846 17 Si 0.839 3.161 18 H -0.274 1.274 19 H -0.276 1.276 20 H -0.249 1.249 21 C 0.177 3.823 22 C -0.118 4.118 23 C -0.116 4.116 24 C -0.139 4.139 25 C -0.117 4.117 26 C -0.119 4.119 27 H 0.080 0.920 28 H 0.038 0.962 29 H 0.034 0.966 30 H 0.075 0.925 31 H 0.033 0.967 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.089 0.911 36 H 0.043 0.957 37 H 0.055 0.945 38 H 0.278 0.722 39 H 0.112 0.888 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.410 -3.687 3.705 6.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.311 6.311 3 C -0.018 4.018 4 C -0.090 4.090 5 H 0.102 0.898 6 C -0.201 4.201 7 C -0.108 4.108 8 H 0.108 0.892 9 C -0.188 4.188 10 C 0.298 3.702 11 O -0.459 6.459 12 N -0.166 5.166 13 C -0.473 4.473 14 H 0.119 0.881 15 C -0.124 4.124 16 N -0.479 5.479 17 Si 0.664 3.336 18 H -0.201 1.201 19 H -0.201 1.201 20 H -0.173 1.173 21 C 0.087 3.913 22 C -0.138 4.138 23 C -0.135 4.135 24 C -0.157 4.157 25 C -0.135 4.135 26 C -0.138 4.138 27 H 0.099 0.901 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.093 0.907 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.108 0.892 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.130 0.870 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.135 0.865 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.548 -4.127 3.873 6.680 hybrid contribution -1.281 0.451 -0.556 1.467 sum -4.828 -3.677 3.317 6.916 Atomic orbital electron populations 1.22647 0.82075 1.01903 0.99714 1.87790 1.18826 1.28999 1.95436 1.23002 0.94171 0.83818 1.00773 1.20951 0.92727 0.96246 0.99125 0.89840 1.21836 1.01185 1.00504 0.96539 1.21129 0.98295 0.94620 0.96739 0.89217 1.21628 0.92715 1.03800 1.00668 1.20668 0.80014 0.81168 0.88343 1.90541 1.42778 1.62968 1.49564 1.41347 1.55303 1.07847 1.12058 1.18812 1.09320 1.30848 0.88316 0.88111 1.25465 0.97138 0.94316 0.95524 1.69716 1.35116 1.43172 0.99904 0.87512 0.87026 0.80106 0.78939 1.20053 1.20110 1.17328 1.18036 0.92027 0.94049 0.87172 1.21332 0.96384 0.98827 0.97208 1.20916 0.99066 1.00172 0.93361 1.20970 0.93855 1.02055 0.98818 1.20918 0.96414 0.99413 0.96775 1.21298 0.99530 1.00114 0.92858 0.90125 0.94302 0.94720 0.90666 0.94851 0.93215 0.92257 0.92165 0.89172 0.93800 0.92606 0.91169 0.86987 0.86628 0.86737 0.86491 0.86189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.39 -7.22 10.24 -35.23 -0.36 -7.58 16 3 C 0.06 1.17 3.94 37.15 0.15 1.31 16 4 C -0.07 -1.40 1.83 -90.62 -0.17 -1.56 16 5 H 0.08 1.68 8.01 -51.93 -0.42 1.26 16 6 C -0.14 -2.38 8.74 37.16 0.32 -2.05 16 7 C -0.09 -1.85 1.00 -91.77 -0.09 -1.94 16 8 H 0.09 2.03 3.26 -51.93 -0.17 1.86 16 9 C -0.13 -2.55 8.53 37.16 0.32 -2.23 16 10 C 0.51 11.93 4.15 -10.98 -0.05 11.88 16 11 O -0.58 -14.52 14.01 5.56 0.08 -14.44 16 12 N -0.45 -10.51 1.97 -58.98 -0.12 -10.62 16 13 C -0.35 -8.65 7.47 -14.93 -0.11 -8.76 16 14 H 0.10 2.67 8.06 -52.49 -0.42 2.25 16 15 C 0.08 2.12 4.04 -17.49 -0.07 2.04 16 16 N -0.85 -21.77 13.96 55.49 0.77 -20.99 16 17 Si 0.84 19.48 24.38 -169.99 -4.15 15.33 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.25 -5.79 3.81 56.52 0.22 -5.58 16 21 C 0.18 3.90 4.41 -83.69 -0.37 3.53 16 22 C -0.12 -2.43 9.97 -39.37 -0.39 -2.82 16 23 C -0.12 -1.98 10.04 -39.61 -0.40 -2.37 16 24 C -0.14 -2.15 10.04 -39.53 -0.40 -2.55 16 25 C -0.12 -1.90 10.04 -39.61 -0.40 -2.29 16 26 C -0.12 -2.31 9.97 -39.37 -0.39 -2.70 16 27 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 1.69 5.29 -51.93 -0.27 1.42 16 31 H 0.03 0.66 7.26 -51.93 -0.38 0.28 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.92 7.82 -51.93 -0.41 0.52 16 34 H 0.06 0.91 6.56 -51.93 -0.34 0.57 16 35 H 0.09 1.94 6.33 -51.93 -0.33 1.61 16 36 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.98 6.73 -51.93 -0.35 0.63 16 38 H 0.28 6.76 8.31 -40.82 -0.34 6.42 16 39 H 0.11 2.35 8.06 -52.49 -0.42 1.93 16 40 H 0.12 1.62 8.06 -52.49 -0.42 1.19 16 41 H 0.11 1.40 8.06 -52.48 -0.42 0.97 16 42 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 43 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 336.40 15.07 5.07 5.07 Total: -1.00 -28.07 336.40 -6.27 -34.33 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -6.63 Total: 7.83 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -0.93 Total: -8.92 kcal Atomic # 7 Polarization: -32.28 SS G_CDS: 0.66 Total: -31.62 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.28 Total: -22.03 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.15 Total: 15.33 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.07 -6.27 -34.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361715708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.887 kcal (2) G-P(sol) polarization free energy of solvation -28.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds