Wall clock time and date at job start Tue Mar 31 2020 07:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38267 * 119.54171 * 2 1 4 4 C 1.38503 * 119.23898 * 180.27089 * 3 2 1 5 5 C 1.50697 * 120.82191 * 179.72838 * 4 3 2 6 6 C 1.39278 * 118.36092 * 359.46306 * 4 3 2 7 7 N 1.39962 * 120.48904 * 180.24669 * 6 4 3 8 8 C 1.34774 * 120.00395 * 304.20115 * 7 6 4 9 9 O 1.21591 * 119.99870 * 353.66397 * 8 7 6 10 10 N 1.34781 * 119.99980 * 173.66169 * 8 7 6 11 11 C 1.46507 * 119.99689 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.46801 * 180.02562 * 11 10 8 13 13 C 1.53005 * 109.46875 * 180.02562 * 12 11 10 14 14 C 1.50698 * 109.46915 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00156 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99841 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00352 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99965 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47349 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47187 * 120.00047 * 18 16 14 21 21 H 1.48506 * 109.46998 * 239.99768 * 18 16 14 22 22 C 1.38841 * 119.01996 * 0.27148 * 6 4 3 23 23 C 1.50701 * 119.66610 * 179.97438 * 22 6 4 24 24 N 1.31822 * 120.67041 * 0.02562 * 22 6 4 25 25 H 1.08996 * 109.47569 * 270.27500 * 1 2 3 26 26 H 1.08997 * 109.47563 * 30.28126 * 1 2 3 27 27 H 1.09001 * 109.46902 * 150.27546 * 1 2 3 28 28 H 1.08011 * 120.38343 * 0.02562 * 3 2 1 29 29 H 1.09001 * 109.47410 * 275.58499 * 5 4 3 30 30 H 1.09001 * 109.47075 * 155.58566 * 5 4 3 31 31 H 1.08999 * 109.46972 * 35.58823 * 5 4 3 32 32 H 0.97008 * 119.99797 * 124.20075 * 7 6 4 33 33 H 0.96997 * 120.00154 * 0.02562 * 10 8 7 34 34 H 1.08994 * 109.46947 * 299.99941 * 11 10 8 35 35 H 1.09001 * 109.46965 * 60.00283 * 11 10 8 36 36 H 1.09004 * 109.46721 * 299.99664 * 12 11 10 37 37 H 1.08997 * 109.47433 * 59.99929 * 12 11 10 38 38 H 1.08994 * 109.46703 * 299.99768 * 13 12 11 39 39 H 1.09001 * 109.47135 * 60.00065 * 13 12 11 40 40 H 0.96994 * 119.99941 * 180.02562 * 17 16 14 41 41 H 1.09007 * 109.47260 * 89.80916 * 23 22 6 42 42 H 1.08998 * 109.47158 * 209.80855 * 23 22 6 43 43 H 1.08996 * 109.46989 * 329.81302 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2029 0.0000 4 6 3.5737 1.1956 -0.0057 5 6 4.3526 2.4856 -0.0120 6 6 4.2288 -0.0335 0.0002 7 7 5.6272 -0.0928 0.0000 8 6 6.3280 0.5293 -0.9687 9 8 5.7468 1.0437 -1.9047 10 7 7.6731 0.5812 -0.8999 11 6 8.4348 1.2579 -1.9526 12 6 9.9292 1.1724 -1.6359 13 6 10.7247 1.8796 -2.7351 14 6 12.1966 1.7960 -2.4228 15 1 12.5312 1.2887 -1.5301 16 6 13.1160 2.3661 -3.2775 17 7 12.7087 2.9825 -4.3655 18 14 14.9406 2.2618 -2.8909 19 1 15.1355 1.5210 -1.6186 20 1 15.6398 1.5500 -3.9907 21 1 15.4971 3.6320 -2.7556 22 6 3.4743 -1.1989 0.0058 23 6 4.1681 -2.5367 0.0117 24 7 2.1571 -1.1472 0.0050 25 1 -0.3634 0.0049 1.0276 26 1 -0.3634 0.8874 -0.5182 27 1 -0.3633 -0.8925 -0.5096 28 1 1.6474 2.1376 0.0004 29 1 4.4506 2.8459 -1.0361 30 1 5.3432 2.3140 0.4090 31 1 3.8275 3.2301 0.5864 32 1 6.0920 -0.5817 0.6971 33 1 8.1367 0.1705 -0.1534 34 1 8.2385 0.7757 -2.9102 35 1 8.1331 2.3041 -2.0040 36 1 10.1258 1.6544 -0.6782 37 1 10.2305 0.1261 -1.5848 38 1 10.5281 1.3980 -3.6929 39 1 10.4233 2.9259 -2.7857 40 1 13.3556 3.3832 -4.9669 41 1 4.3388 -2.8530 1.0408 42 1 3.5437 -3.2721 -0.4956 43 1 5.1237 -2.4526 -0.5058 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455490708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:16 Heat of formation + Delta-G solvation = -18.326505 kcal Electronic energy + Delta-G solvation = -22509.886318 eV Core-core repulsion = 19168.228411 eV Total energy + Delta-G solvation = -3341.657906 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.19574 -39.55369 -36.03274 -35.06202 -34.20815 -33.41573 -32.42068 -31.02007 -29.18805 -27.85778 -27.12981 -25.99748 -23.26697 -21.93071 -21.53142 -20.77794 -20.29888 -18.55393 -17.57156 -17.06172 -16.34693 -15.39845 -15.22500 -15.06972 -14.87077 -14.44981 -14.08938 -14.05607 -13.81909 -13.46452 -13.38106 -13.10366 -12.82000 -12.40548 -12.32555 -12.28439 -11.95923 -11.86215 -11.79070 -11.74484 -10.95304 -10.78012 -10.59787 -10.37857 -10.29363 -9.90697 -9.64553 -9.47236 -9.36724 -9.14386 -8.88422 -8.40377 -8.39348 -6.04551 -4.07741 0.85891 1.10727 2.61392 3.15718 3.27975 3.35652 3.38881 3.53152 3.99900 4.21035 4.42134 4.44183 4.48559 4.87032 5.05624 5.23103 5.25262 5.30569 5.31385 5.32427 5.37682 5.40512 5.55834 5.61402 5.65738 5.74553 5.82991 5.92827 6.01904 6.09918 6.11711 6.25472 6.41887 6.56252 6.63898 6.74136 6.91015 6.96827 7.60693 7.72708 7.83670 7.94124 7.95479 8.34731 8.58488 8.99168 9.56681 11.06745 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.039512 B = 0.002456 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.477618 B =11395.646986 C =11767.666500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.122 3.878 3 C -0.168 4.168 4 C -0.026 4.026 5 C -0.110 4.110 6 C 0.108 3.892 7 N -0.691 5.691 8 C 0.700 3.300 9 O -0.574 6.574 10 N -0.737 5.737 11 C 0.135 3.865 12 C -0.120 4.120 13 C 0.024 3.976 14 C -0.522 4.522 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.893 5.893 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.125 3.875 23 C -0.103 4.103 24 N -0.479 5.479 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.135 0.865 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.405 0.595 33 H 0.395 0.605 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.261 0.739 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.306 -6.815 12.925 25.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.016 4.016 3 C -0.189 4.189 4 C -0.035 4.035 5 C -0.167 4.167 6 C 0.012 3.988 7 N -0.343 5.343 8 C 0.400 3.600 9 O -0.450 6.450 10 N -0.391 5.391 11 C 0.012 3.988 12 C -0.158 4.158 13 C -0.014 4.014 14 C -0.560 4.560 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.532 5.532 18 Si 0.721 3.279 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.015 4.015 23 C -0.160 4.160 24 N -0.190 5.190 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.153 0.847 29 H 0.108 0.892 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.241 0.759 33 H 0.229 0.771 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.070 0.930 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -22.161 -6.969 11.869 26.088 hybrid contribution 2.042 0.397 0.765 2.216 sum -20.120 -6.572 12.634 24.650 Atomic orbital electron populations 1.20670 0.88754 1.03449 1.02894 1.21191 0.96923 0.88091 0.95405 1.21711 0.93383 0.99379 1.04406 1.20385 0.93848 0.95162 0.94148 1.20804 0.99196 0.92981 1.03698 1.17949 0.82954 0.93224 1.04719 1.42447 1.03821 1.57756 1.30259 1.16001 0.82133 0.79553 0.82292 1.90953 1.69267 1.51136 1.33681 1.45403 1.04100 1.60956 1.28642 1.21566 0.91600 0.96589 0.89059 1.21898 0.91004 1.01291 1.01641 1.19033 0.94001 0.95606 0.92760 1.21228 0.91420 1.35522 1.07852 0.92591 1.25037 0.99101 0.95299 0.95083 1.69973 1.34169 1.36681 1.12402 0.86527 0.85346 0.77757 0.78292 1.19768 1.20988 1.20996 1.21283 0.89237 0.94760 0.96258 1.20666 1.00114 0.92373 1.02862 1.67332 1.08309 1.29287 1.14076 0.90542 0.90741 0.90538 0.84673 0.89223 0.91682 0.91462 0.75913 0.77131 0.91802 0.91791 0.92708 0.92693 0.96229 0.96239 0.92954 0.90449 0.90203 0.90666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.74 10.16 36.00 0.37 -0.37 16 2 C 0.12 1.33 6.78 -82.57 -0.56 0.77 16 3 C -0.17 -1.81 9.46 -39.47 -0.37 -2.18 16 4 C -0.03 -0.32 5.54 -104.14 -0.58 -0.89 16 5 C -0.11 -1.30 8.43 36.00 0.30 -0.99 16 6 C 0.11 1.33 5.75 -83.54 -0.48 0.85 16 7 N -0.69 -7.65 3.85 -14.12 -0.05 -7.70 16 8 C 0.70 10.13 6.85 -86.92 -0.60 9.53 16 9 O -0.57 -10.69 14.17 5.29 0.07 -10.62 16 10 N -0.74 -9.93 5.56 -65.22 -0.36 -10.29 16 11 C 0.13 2.28 5.67 -4.04 -0.02 2.26 16 12 C -0.12 -2.26 5.27 -26.73 -0.14 -2.40 16 13 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 14 C -0.52 -14.36 9.11 -34.44 -0.31 -14.67 16 15 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 18 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 C 0.12 1.49 6.80 -82.37 -0.56 0.93 16 23 C -0.10 -0.92 9.90 36.01 0.36 -0.57 16 24 N -0.48 -5.93 10.18 -5.59 -0.06 -5.99 16 25 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 27 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 29 H 0.09 1.23 7.37 -51.93 -0.38 0.85 16 30 H 0.06 0.80 6.57 -51.93 -0.34 0.46 16 31 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 32 H 0.40 3.11 8.80 -40.82 -0.36 2.75 16 33 H 0.40 4.11 8.50 -40.82 -0.35 3.76 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.07 0.67 7.45 -51.93 -0.39 0.28 16 LS Contribution 358.48 15.07 5.40 5.40 Total: -1.00 -33.77 358.48 -8.97 -42.74 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -6.85 Total: 1.86 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -2.83 Total: -5.81 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: 0.26 Total: -49.84 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.07 Total: -10.62 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.77 -8.97 -42.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455490708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.412 kcal (2) G-P(sol) polarization free energy of solvation -33.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds