Wall clock time and date at job start Tue Mar 31 2020 07:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38267 * 119.54171 * 2 1 4 4 C 1.38503 * 119.23898 * 180.27089 * 3 2 1 5 5 C 1.50697 * 120.82191 * 179.72838 * 4 3 2 6 6 C 1.39278 * 118.36092 * 359.46306 * 4 3 2 7 7 N 1.39962 * 120.48904 * 180.24669 * 6 4 3 8 8 C 1.34774 * 120.00395 * 304.20115 * 7 6 4 9 9 O 1.21591 * 119.99870 * 353.66397 * 8 7 6 10 10 N 1.34781 * 119.99980 * 173.66169 * 8 7 6 11 11 C 1.46507 * 119.99689 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.46801 * 180.02562 * 11 10 8 13 13 C 1.53005 * 109.46875 * 180.02562 * 12 11 10 14 14 C 1.50698 * 109.46915 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00156 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99841 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00352 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99965 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47349 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47187 * 120.00047 * 18 16 14 21 21 H 1.48506 * 109.46998 * 239.99768 * 18 16 14 22 22 C 1.38841 * 119.01996 * 0.27148 * 6 4 3 23 23 C 1.50701 * 119.66610 * 179.97438 * 22 6 4 24 24 N 1.31822 * 120.67041 * 0.02562 * 22 6 4 25 25 H 1.08996 * 109.47569 * 270.27500 * 1 2 3 26 26 H 1.08997 * 109.47563 * 30.28126 * 1 2 3 27 27 H 1.09001 * 109.46902 * 150.27546 * 1 2 3 28 28 H 1.08011 * 120.38343 * 0.02562 * 3 2 1 29 29 H 1.09001 * 109.47410 * 275.58499 * 5 4 3 30 30 H 1.09001 * 109.47075 * 155.58566 * 5 4 3 31 31 H 1.08999 * 109.46972 * 35.58823 * 5 4 3 32 32 H 0.97008 * 119.99797 * 124.20075 * 7 6 4 33 33 H 0.96997 * 120.00154 * 0.02562 * 10 8 7 34 34 H 1.08994 * 109.46947 * 299.99941 * 11 10 8 35 35 H 1.09001 * 109.46965 * 60.00283 * 11 10 8 36 36 H 1.09004 * 109.46721 * 299.99664 * 12 11 10 37 37 H 1.08997 * 109.47433 * 59.99929 * 12 11 10 38 38 H 1.08994 * 109.46703 * 299.99768 * 13 12 11 39 39 H 1.09001 * 109.47135 * 60.00065 * 13 12 11 40 40 H 0.96994 * 119.99941 * 180.02562 * 17 16 14 41 41 H 1.09007 * 109.47260 * 89.80916 * 23 22 6 42 42 H 1.08998 * 109.47158 * 209.80855 * 23 22 6 43 43 H 1.08996 * 109.46989 * 329.81302 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2029 0.0000 4 6 3.5737 1.1956 -0.0057 5 6 4.3526 2.4856 -0.0120 6 6 4.2288 -0.0335 0.0002 7 7 5.6272 -0.0928 0.0000 8 6 6.3280 0.5293 -0.9687 9 8 5.7468 1.0437 -1.9047 10 7 7.6731 0.5812 -0.8999 11 6 8.4348 1.2579 -1.9526 12 6 9.9292 1.1724 -1.6359 13 6 10.7247 1.8796 -2.7351 14 6 12.1966 1.7960 -2.4228 15 1 12.5312 1.2887 -1.5301 16 6 13.1160 2.3661 -3.2775 17 7 12.7087 2.9825 -4.3655 18 14 14.9406 2.2618 -2.8909 19 1 15.1355 1.5210 -1.6186 20 1 15.6398 1.5500 -3.9907 21 1 15.4971 3.6320 -2.7556 22 6 3.4743 -1.1989 0.0058 23 6 4.1681 -2.5367 0.0117 24 7 2.1571 -1.1472 0.0050 25 1 -0.3634 0.0049 1.0276 26 1 -0.3634 0.8874 -0.5182 27 1 -0.3633 -0.8925 -0.5096 28 1 1.6474 2.1376 0.0004 29 1 4.4506 2.8459 -1.0361 30 1 5.3432 2.3140 0.4090 31 1 3.8275 3.2301 0.5864 32 1 6.0920 -0.5817 0.6971 33 1 8.1367 0.1705 -0.1534 34 1 8.2385 0.7757 -2.9102 35 1 8.1331 2.3041 -2.0040 36 1 10.1258 1.6544 -0.6782 37 1 10.2305 0.1261 -1.5848 38 1 10.5281 1.3980 -3.6929 39 1 10.4233 2.9259 -2.7857 40 1 13.3556 3.3832 -4.9669 41 1 4.3388 -2.8530 1.0408 42 1 3.5437 -3.2721 -0.4956 43 1 5.1237 -2.4526 -0.5058 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455490708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:15 Heat of formation + Delta-G solvation = -40.734383 kcal Electronic energy + Delta-G solvation = -22510.857996 eV Core-core repulsion = 19168.228411 eV Total energy + Delta-G solvation = -3342.629585 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.14436 -40.61300 -37.28790 -36.29780 -35.27895 -34.99326 -33.57361 -32.55757 -29.92708 -28.89332 -28.51282 -27.11915 -24.96066 -22.88722 -22.50377 -22.29704 -21.44706 -19.66554 -18.74890 -18.29227 -17.97676 -16.67709 -16.58975 -16.20140 -15.93096 -15.78007 -15.49154 -15.25922 -14.66253 -14.29880 -14.24210 -14.09079 -13.88937 -13.75872 -13.73271 -13.45816 -13.12950 -12.93892 -12.78633 -12.66883 -12.55970 -12.54369 -12.33634 -11.70605 -11.67698 -11.37147 -11.34820 -11.16676 -10.55701 -10.48635 -10.32757 -10.05414 -9.29487 -8.19278 -6.30440 0.00076 0.22258 1.42003 1.42153 1.53586 1.56061 2.01408 2.42032 2.67744 3.13907 3.14770 3.31659 3.60691 3.68942 4.07725 4.15327 4.23762 4.25555 4.37888 4.54453 4.56614 4.58133 4.64552 4.68542 4.72394 4.83214 4.93562 4.96373 4.98070 5.10563 5.13883 5.17818 5.20434 5.25601 5.39290 5.43203 5.53714 5.72103 5.81146 5.85150 5.88423 6.23082 6.87242 6.96765 6.99105 7.39200 7.47275 8.93015 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.039512 B = 0.002456 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.477618 B =11395.646986 C =11767.666500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.114 3.886 3 C -0.172 4.172 4 C -0.045 4.045 5 C -0.103 4.103 6 C 0.086 3.914 7 N -0.670 5.670 8 C 0.702 3.298 9 O -0.618 6.618 10 N -0.723 5.723 11 C 0.151 3.849 12 C -0.100 4.100 13 C 0.023 3.977 14 C -0.538 4.538 15 H 0.067 0.933 16 C -0.005 4.005 17 N -0.935 5.935 18 Si 0.967 3.033 19 H -0.258 1.258 20 H -0.281 1.281 21 H -0.281 1.281 22 C 0.116 3.884 23 C -0.100 4.100 24 N -0.499 5.499 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.073 0.927 28 H 0.160 0.840 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.091 0.909 32 H 0.423 0.577 33 H 0.414 0.586 34 H 0.047 0.953 35 H 0.050 0.950 36 H 0.069 0.931 37 H 0.069 0.931 38 H -0.008 1.008 39 H -0.007 1.007 40 H 0.263 0.737 41 H 0.100 0.900 42 H 0.078 0.922 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.482 -7.760 15.063 27.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.024 4.024 3 C -0.192 4.192 4 C -0.054 4.054 5 C -0.160 4.160 6 C -0.010 4.010 7 N -0.323 5.323 8 C 0.403 3.597 9 O -0.497 6.497 10 N -0.379 5.379 11 C 0.027 3.973 12 C -0.138 4.138 13 C -0.015 4.015 14 C -0.576 4.576 15 H 0.085 0.915 16 C -0.202 4.202 17 N -0.576 5.576 18 Si 0.791 3.209 19 H -0.181 1.181 20 H -0.207 1.207 21 H -0.207 1.207 22 C -0.024 4.024 23 C -0.157 4.157 24 N -0.210 5.210 25 H 0.111 0.889 26 H 0.111 0.889 27 H 0.092 0.908 28 H 0.178 0.822 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.109 0.891 32 H 0.262 0.738 33 H 0.251 0.749 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.010 0.990 39 H 0.011 0.989 40 H 0.071 0.929 41 H 0.118 0.882 42 H 0.097 0.903 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -22.338 -7.958 14.078 27.577 hybrid contribution 1.987 0.691 0.100 2.106 sum -20.351 -7.267 14.178 25.845 Atomic orbital electron populations 1.20765 0.86334 1.04244 1.04153 1.21803 0.98628 0.87805 0.94149 1.22004 0.92928 1.00530 1.03716 1.20640 0.94842 0.95283 0.94663 1.20713 0.99178 0.93602 1.02478 1.18127 0.83182 0.93696 1.05991 1.42116 1.03526 1.56938 1.29708 1.16052 0.82108 0.79307 0.82280 1.90932 1.70113 1.53007 1.35668 1.44998 1.03819 1.60676 1.28402 1.21105 0.90886 0.95995 0.89358 1.21590 0.91076 1.01331 0.99828 1.18949 0.94349 0.94486 0.93711 1.21708 0.92670 1.35131 1.08091 0.91459 1.26028 1.04402 0.94928 0.94885 1.70118 1.35948 1.37862 1.13657 0.85374 0.78993 0.77903 0.78604 1.18131 1.20688 1.20653 1.21689 0.89390 0.95672 0.95676 1.20720 0.99689 0.90981 1.04309 1.67425 1.08577 1.30134 1.14909 0.88921 0.88907 0.90771 0.82244 0.91691 0.92500 0.89052 0.73808 0.74926 0.93484 0.93200 0.91207 0.91269 0.98995 0.98897 0.92853 0.88162 0.90305 0.90634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.24 10.16 71.23 0.72 -0.51 16 2 C 0.11 2.32 6.78 42.56 0.29 2.61 16 3 C -0.17 -3.46 9.46 22.34 0.21 -3.25 16 4 C -0.04 -1.07 5.54 -19.55 -0.11 -1.18 16 5 C -0.10 -2.40 8.43 71.23 0.60 -1.80 16 6 C 0.09 2.07 5.75 38.24 0.22 2.29 16 7 N -0.67 -14.13 3.85 -316.86 -1.22 -15.35 16 8 C 0.70 20.01 6.85 179.05 1.23 21.24 16 9 O -0.62 -23.44 14.17 -4.00 -0.06 -23.50 16 10 N -0.72 -18.74 5.56 -478.51 -2.66 -21.40 16 11 C 0.15 5.14 5.67 86.38 0.49 5.63 16 12 C -0.10 -3.70 5.27 30.60 0.16 -3.54 16 13 C 0.02 1.16 4.97 29.85 0.15 1.31 16 14 C -0.54 -29.56 9.11 25.60 0.23 -29.33 16 15 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 16 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 17 N -0.94 -56.83 13.29 21.45 0.28 -56.54 16 18 Si 0.97 43.41 29.54 68.60 2.03 45.44 16 19 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 20 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 21 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 22 C 0.12 2.64 6.80 42.71 0.29 2.93 16 23 C -0.10 -1.65 9.90 71.24 0.71 -0.94 16 24 N -0.50 -11.86 10.18 -171.60 -1.75 -13.60 16 25 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.09 0.83 8.08 -2.39 -0.02 0.81 16 27 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.16 2.27 8.06 -2.90 -0.02 2.25 16 29 H 0.06 1.85 7.37 -2.39 -0.02 1.83 16 30 H 0.06 1.38 6.57 -2.39 -0.02 1.36 16 31 H 0.09 1.59 8.13 -2.39 -0.02 1.57 16 32 H 0.42 5.68 8.80 -92.70 -0.82 4.86 16 33 H 0.41 7.65 8.50 -92.71 -0.79 6.87 16 34 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 37 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 38 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 39 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 40 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 41 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 42 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.07 1.23 7.45 -2.39 -0.02 1.21 16 Total: -1.00 -74.44 358.48 1.70 -72.74 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -0.58 Total: 16.57 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: 5.65 Total: -4.36 kcal Atomic # 7 Polarization: -101.55 SS G_CDS: -5.34 Total: -106.89 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.06 Total: -23.50 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -74.44 1.70 -72.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455490708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.008 kcal (2) G-P(sol) polarization free energy of solvation -74.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds