Wall clock time and date at job start Tue Mar 31 2020 06:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36765 * 125.80256 * 2 1 4 4 C 1.47264 * 126.94197 * 0.07034 * 3 2 1 5 5 O 1.21622 * 120.00401 * 348.97948 * 4 3 2 6 6 N 1.34781 * 119.99874 * 168.97844 * 4 3 2 7 7 C 1.46501 * 119.99929 * 0.80857 * 6 4 3 8 8 C 1.46503 * 120.00018 * 180.80410 * 6 4 3 9 9 H 1.09000 * 110.63595 * 1.69301 * 8 6 4 10 10 C 1.55160 * 110.71576 * 125.02643 * 8 6 4 11 11 C 1.54906 * 101.57866 * 153.86959 * 10 8 6 12 12 N 1.47429 * 104.83181 * 322.98745 * 11 10 8 13 13 C 1.36935 * 125.64803 * 204.16693 * 12 11 10 14 14 H 1.08000 * 119.99884 * 179.97438 * 13 12 11 15 15 C 1.38813 * 120.00044 * 359.95943 * 13 12 11 16 16 N 1.31620 * 120.00151 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00080 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47519 * 89.99740 * 17 15 13 19 19 H 1.48497 * 109.47292 * 209.99912 * 17 15 13 20 20 H 1.48500 * 109.47066 * 329.99840 * 17 15 13 21 21 C 1.47022 * 108.70229 * 24.13240 * 12 11 10 22 22 C 1.46686 * 106.11509 * 179.79622 * 3 2 1 23 23 C 1.34485 * 106.33155 * 0.39478 * 22 3 2 24 24 N 1.34655 * 125.79825 * 180.02562 * 2 1 3 25 25 C 1.46498 * 124.85520 * 359.96862 * 24 2 1 26 26 H 1.08997 * 109.47355 * 269.99058 * 1 2 3 27 27 H 1.09003 * 109.46916 * 29.98157 * 1 2 3 28 28 H 1.08994 * 109.47387 * 149.98324 * 1 2 3 29 29 H 1.09000 * 109.47338 * 83.32396 * 7 6 4 30 30 H 1.09001 * 109.47035 * 203.31820 * 7 6 4 31 31 H 1.09001 * 109.47280 * 323.32629 * 7 6 4 32 32 H 1.09005 * 111.00277 * 271.94036 * 10 8 6 33 33 H 1.08997 * 111.00518 * 35.79441 * 10 8 6 34 34 H 1.08997 * 110.36700 * 204.15103 * 11 10 8 35 35 H 1.08994 * 110.46544 * 81.87730 * 11 10 8 36 36 H 0.97001 * 120.00156 * 180.02562 * 16 15 13 37 37 H 1.08999 * 109.87985 * 239.52446 * 21 12 11 38 38 H 1.08996 * 109.87915 * 118.35720 * 21 12 11 39 39 H 1.08004 * 126.83494 * 180.25552 * 22 3 2 40 40 H 1.08007 * 125.57074 * 179.86982 * 23 22 3 41 41 H 1.08999 * 109.46949 * 270.02665 * 25 24 2 42 42 H 1.09004 * 109.46660 * 30.01780 * 25 24 2 43 43 H 1.08999 * 109.47736 * 150.02001 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3071 1.1092 0.0000 4 6 1.8702 2.5156 0.0014 5 8 0.7024 2.7899 -0.1985 6 7 2.7647 3.4988 0.2244 7 6 4.1747 3.1696 0.4477 8 6 2.3271 4.8968 0.2434 9 1 1.2499 4.9642 0.0908 10 6 2.7414 5.5837 1.5715 11 6 2.8312 7.0684 1.1388 12 7 3.3832 7.0305 -0.2277 13 6 4.0643 8.0475 -0.8418 14 1 4.4305 7.9206 -1.8498 15 6 4.2837 9.2415 -0.1687 16 7 3.8367 9.3965 1.0595 17 14 5.2122 10.6290 -1.0067 18 1 4.2523 11.5010 -1.7301 19 1 5.9346 11.4289 0.0148 20 1 6.1879 10.0602 -1.9709 21 6 3.0820 5.7198 -0.8217 22 6 3.6882 0.6151 0.0050 23 6 3.6095 -0.7275 -0.0013 24 7 2.2947 -1.0922 -0.0005 25 6 1.8093 -2.4744 -0.0004 26 1 -0.3634 -0.0002 1.0276 27 1 -0.3633 0.8902 -0.5136 28 1 -0.3634 -0.8898 -0.5141 29 1 4.6741 3.0402 -0.5124 30 1 4.6535 3.9781 1.0002 31 1 4.2456 2.2455 1.0215 32 1 1.9783 5.4455 2.3375 33 1 3.7088 5.2178 1.9154 34 1 3.4992 7.6172 1.8026 35 1 1.8415 7.5250 1.1357 36 1 3.9897 10.2310 1.5297 37 1 4.0086 5.2140 -1.0928 38 1 2.4552 5.8480 -1.7041 39 1 4.5890 1.2108 0.0102 40 1 4.4497 -1.4061 -0.0019 41 1 1.6890 -2.8172 1.0272 42 1 0.8491 -2.5223 -0.5142 43 1 2.5286 -3.1121 -0.5143 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033400621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:07 Heat of formation + Delta-G solvation = 66.749666 kcal Electronic energy + Delta-G solvation = -23610.558285 eV Core-core repulsion = 20272.589558 eV Total energy + Delta-G solvation = -3337.968727 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.49035 -39.26842 -37.07570 -34.75651 -33.05251 -31.89089 -31.63895 -29.20756 -27.86817 -27.02995 -26.45491 -25.89703 -24.33208 -22.05951 -20.61473 -20.10573 -19.22363 -18.30170 -17.05469 -16.86926 -16.18680 -15.81744 -15.42926 -14.72034 -14.60528 -14.16326 -14.03105 -13.68793 -13.30002 -13.15312 -12.94637 -12.80817 -12.70048 -12.65947 -12.27100 -12.18444 -11.75097 -11.58919 -11.48674 -11.04117 -10.97705 -10.76721 -10.71777 -10.28879 -10.06935 -9.74457 -9.47191 -9.37791 -8.65683 -8.60365 -8.32907 -8.00552 -6.78111 -5.60221 -3.02071 1.80219 2.37303 2.65452 3.43453 3.46671 3.49369 3.51546 3.75827 4.43313 4.54546 4.64091 4.75309 4.80659 4.98337 5.09562 5.19438 5.45860 5.46726 5.50411 5.54619 5.56312 5.65180 5.76168 5.83576 5.85732 5.92185 5.94379 6.07957 6.17551 6.35602 6.51109 6.67294 6.72041 6.73368 6.82935 6.95822 7.11824 7.21587 7.57119 7.67739 7.86083 7.92824 8.40399 8.65433 9.26845 9.87573 10.52701 11.43479 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.038398 B = 0.003269 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.024084 B = 8564.113097 C = 8847.128071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.099 3.901 3 C -0.227 4.227 4 C 0.589 3.411 5 O -0.558 6.558 6 N -0.594 5.594 7 C 0.064 3.936 8 C 0.128 3.872 9 H 0.102 0.898 10 C -0.153 4.153 11 C 0.154 3.846 12 N -0.603 5.603 13 C -0.220 4.220 14 H 0.077 0.923 15 C -0.012 4.012 16 N -0.923 5.923 17 Si 0.915 3.085 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.282 1.282 21 C 0.130 3.870 22 C -0.179 4.179 23 C -0.025 4.025 24 N -0.448 5.448 25 C 0.068 3.932 26 H 0.074 0.926 27 H 0.105 0.895 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.108 0.892 35 H 0.014 0.986 36 H 0.252 0.748 37 H 0.027 0.973 38 H 0.024 0.976 39 H 0.163 0.837 40 H 0.165 0.835 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.474 -24.559 0.629 24.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.017 4.017 3 C -0.237 4.237 4 C 0.379 3.621 5 O -0.439 6.439 6 N -0.325 5.325 7 C -0.079 4.079 8 C 0.025 3.975 9 H 0.120 0.880 10 C -0.192 4.192 11 C 0.028 3.972 12 N -0.329 5.329 13 C -0.348 4.348 14 H 0.095 0.905 15 C -0.207 4.207 16 N -0.572 5.572 17 Si 0.745 3.255 18 H -0.217 1.217 19 H -0.217 1.217 20 H -0.207 1.207 21 C 0.003 3.997 22 C -0.202 4.202 23 C -0.151 4.151 24 N -0.125 5.125 25 C -0.074 4.074 26 H 0.092 0.908 27 H 0.123 0.877 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.126 0.874 35 H 0.032 0.968 36 H 0.062 0.938 37 H 0.045 0.955 38 H 0.042 0.958 39 H 0.181 0.819 40 H 0.182 0.818 41 H 0.092 0.908 42 H 0.102 0.898 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.079 -24.534 0.560 24.628 hybrid contribution 0.677 0.602 -0.473 1.022 sum -1.402 -23.932 0.088 23.973 Atomic orbital electron populations 1.20587 0.87258 1.04230 1.03191 1.20282 0.93681 0.85143 1.02635 1.20158 0.93221 0.92055 1.18270 1.17361 0.84827 0.83968 0.75917 1.90685 1.17730 1.83946 1.51511 1.47573 1.08362 1.06295 1.70225 1.22386 0.81948 1.02375 1.01158 1.22207 1.00101 0.78350 0.96888 0.87951 1.23393 1.00351 0.99834 0.95612 1.21925 0.98136 0.89573 0.87523 1.44447 1.64820 1.10884 1.12782 1.19079 1.26699 0.91597 0.97423 0.90511 1.24785 1.01347 0.97924 0.96681 1.69794 1.50974 1.25308 1.11085 0.86064 0.79253 0.82052 0.78085 1.21666 1.21693 1.20733 1.21525 0.96380 0.87555 0.94258 1.22826 0.96664 0.93420 1.07304 1.21768 0.85249 0.96398 1.11702 1.43548 1.06109 1.05956 1.56850 1.22064 1.01643 0.80291 1.03355 0.90758 0.87689 0.92142 0.92724 0.90540 0.89769 0.92136 0.91662 0.87386 0.96775 0.93755 0.95474 0.95827 0.81940 0.81765 0.90815 0.89751 0.89718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.03 9.64 36.01 0.35 -0.69 16 2 C 0.10 1.24 6.89 -81.89 -0.56 0.67 16 3 C -0.23 -3.33 6.06 -103.35 -0.63 -3.96 16 4 C 0.59 10.47 7.65 -12.59 -0.10 10.37 16 5 O -0.56 -11.33 14.19 5.26 0.07 -11.26 16 6 N -0.59 -10.33 2.88 -173.16 -0.50 -10.83 16 7 C 0.06 0.90 7.45 59.85 0.45 1.34 16 8 C 0.13 2.57 3.36 -66.10 -0.22 2.35 16 9 H 0.10 2.21 6.99 -51.93 -0.36 1.85 16 10 C -0.15 -3.09 6.59 -24.58 -0.16 -3.25 16 11 C 0.15 3.85 5.89 -2.53 -0.01 3.84 16 12 N -0.60 -15.98 3.39 -170.08 -0.58 -16.56 16 13 C -0.22 -6.26 10.27 -15.06 -0.15 -6.41 16 14 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 15 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 16 N -0.92 -27.24 10.09 55.49 0.56 -26.68 16 17 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 18 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 C 0.13 2.93 6.88 -3.07 -0.02 2.91 16 22 C -0.18 -2.09 8.83 -37.50 -0.33 -2.42 16 23 C -0.03 -0.24 11.34 -16.82 -0.19 -0.43 16 24 N -0.45 -4.31 3.09 -119.88 -0.37 -4.68 16 25 C 0.07 0.35 10.82 59.85 0.65 1.00 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.10 1.41 6.31 -51.93 -0.33 1.08 16 28 H 0.06 0.48 6.92 -51.93 -0.36 0.12 16 29 H 0.05 0.72 7.61 -51.93 -0.40 0.32 16 30 H 0.08 1.14 6.15 -51.93 -0.32 0.82 16 31 H 0.08 1.00 4.84 -51.93 -0.25 0.75 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.06 1.26 6.16 -51.93 -0.32 0.94 16 34 H 0.11 2.99 5.87 -51.93 -0.31 2.69 16 35 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 37 H 0.03 0.60 7.09 -51.93 -0.37 0.23 16 38 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.16 1.65 4.84 -52.48 -0.25 1.40 16 40 H 0.17 1.01 8.06 -52.48 -0.42 0.59 16 41 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.08 0.36 6.88 -51.93 -0.36 0.00 16 43 H 0.08 0.28 8.13 -51.93 -0.42 -0.14 16 LS Contribution 334.36 15.07 5.04 5.04 Total: -1.00 -34.29 334.36 -7.96 -42.25 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -6.12 Total: 0.48 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -1.04 Total: 4.88 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: -0.89 Total: -58.74 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.07 Total: -11.26 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.29 -7.96 -42.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033400621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.001 kcal (2) G-P(sol) polarization free energy of solvation -34.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds